Wall clock time and date at job start Tue Mar 31 2020 20:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35320 * 126.12378 * 2 1 4 4 C 1.39866 * 107.91770 * 180.02562 * 3 2 1 5 5 C 1.50696 * 125.90002 * 179.97438 * 4 3 2 6 6 N 1.46900 * 109.47337 * 95.00084 * 5 4 3 7 7 C 1.46904 * 111.00011 * 180.02562 * 6 5 4 8 8 H 1.08999 * 110.88521 * 328.87714 * 7 6 5 9 9 C 1.55160 * 111.00249 * 204.99832 * 7 6 5 10 10 C 1.54316 * 102.94268 * 206.42592 * 9 7 6 11 11 N 1.47026 * 107.27365 * 22.19228 * 10 9 7 12 12 C 1.34771 * 125.65100 * 180.79395 * 11 10 9 13 13 O 1.21280 * 119.99952 * 180.02562 * 12 11 10 14 14 C 1.50705 * 119.99988 * 0.02691 * 12 11 10 15 15 S 1.80993 * 109.46992 * 179.97438 * 14 12 11 16 16 C 1.76201 * 100.00132 * 179.97438 * 15 14 12 17 17 H 1.07999 * 119.99797 * 0.02562 * 16 15 14 18 18 C 1.38798 * 120.00331 * 179.97438 * 16 15 14 19 19 N 1.31626 * 120.00111 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46975 * 60.00437 * 20 18 16 22 22 H 1.48494 * 109.46964 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47208 * 299.99927 * 20 18 16 24 24 C 1.47425 * 108.70074 * 1.05989 * 11 10 9 25 25 N 1.30848 * 108.20542 * 0.26423 * 4 3 2 26 26 N 1.34943 * 126.12782 * 180.02562 * 2 1 3 27 27 C 1.46508 * 126.03818 * 359.96512 * 26 2 1 28 28 H 1.09002 * 109.47000 * 89.97909 * 1 2 3 29 29 H 1.08999 * 109.46978 * 209.97395 * 1 2 3 30 30 H 1.08998 * 109.47309 * 329.97705 * 1 2 3 31 31 H 1.07995 * 126.03878 * 0.02562 * 3 2 1 32 32 H 1.08997 * 109.47184 * 335.00238 * 5 4 3 33 33 H 1.09002 * 109.47333 * 215.00189 * 5 4 3 34 34 H 1.00899 * 110.99606 * 303.95382 * 6 5 4 35 35 H 1.08997 * 110.71793 * 88.05922 * 9 7 6 36 36 H 1.09003 * 110.87062 * 324.86265 * 9 7 6 37 37 H 1.09004 * 109.88447 * 262.78098 * 10 9 7 38 38 H 1.09000 * 109.88516 * 141.60887 * 10 9 7 39 39 H 1.08993 * 109.46871 * 299.99760 * 14 12 11 40 40 H 1.09000 * 109.46865 * 59.99842 * 14 12 11 41 41 H 0.97001 * 120.00554 * 179.97438 * 19 18 16 42 42 H 1.09001 * 110.36478 * 94.71036 * 24 11 10 43 43 H 1.08998 * 110.36859 * 217.03414 * 24 11 10 44 44 H 1.08994 * 109.46826 * 89.99919 * 27 26 2 45 45 H 1.08994 * 109.46956 * 210.00453 * 27 26 2 46 46 H 1.09005 * 109.46538 * 330.00160 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6334 0.6560 -0.0006 5 6 4.8542 1.5396 -0.0013 6 7 5.3224 1.7291 1.3781 7 6 6.5137 2.5878 1.4164 8 1 7.1102 2.4654 0.5123 9 6 7.3619 2.3059 2.6847 10 6 8.0922 3.6453 2.9169 11 7 7.3100 4.6917 2.2423 12 6 7.6240 6.0015 2.1979 13 8 6.9019 6.7786 1.6100 14 6 8.8724 6.5006 2.8789 15 16 9.0154 8.2891 2.6409 16 6 10.5153 8.5950 3.5136 17 1 11.0404 7.7788 3.9873 18 6 11.0224 9.8847 3.5914 19 7 10.3826 10.8794 3.0137 20 14 12.6121 10.2089 4.5172 21 1 13.7131 9.4272 3.8992 22 1 12.9357 11.6567 4.4531 23 1 12.4508 9.8006 5.9359 24 6 6.1221 4.0716 1.6277 25 7 3.6334 -0.6524 -0.0067 26 7 2.3026 -1.0899 -0.0005 27 6 1.8539 -2.4846 -0.0004 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5142 31 1 1.9740 2.1211 0.0004 32 1 4.6023 2.5070 -0.4356 33 1 5.6418 1.0706 -0.5911 34 1 4.5885 2.1032 1.9608 35 1 8.0766 1.5039 2.5002 36 1 6.7225 2.0630 3.5334 37 1 9.0947 3.5997 2.4915 38 1 8.1496 3.8560 3.9848 39 1 8.8183 6.2788 3.9446 40 1 9.7433 6.0063 2.4485 41 1 10.7367 11.7808 3.0684 42 1 5.2657 4.1462 2.2979 43 1 5.8989 4.5449 0.6715 44 1 1.7422 -2.8303 -1.0280 45 1 2.5901 -3.1030 0.5131 46 1 0.8957 -2.5579 0.5139 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181106831.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:04 Heat of formation + Delta-G solvation = 20.382094 kcal Electronic energy + Delta-G solvation = -25531.505207 eV Core-core repulsion = 21775.950788 eV Total energy + Delta-G solvation = -3755.554419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.20832 -41.09242 -38.93890 -36.48392 -34.58866 -34.30506 -32.85351 -32.15939 -30.82660 -29.49428 -27.91462 -27.77803 -27.42140 -25.43519 -24.12063 -21.92752 -21.31890 -20.72807 -20.33517 -19.55951 -18.09460 -17.63155 -17.45873 -16.91109 -16.87371 -16.61470 -16.14153 -15.97619 -15.59489 -15.13439 -14.91132 -14.66909 -14.49592 -14.36381 -14.18859 -13.96120 -13.95355 -13.66870 -13.41168 -13.32806 -13.18953 -13.15204 -13.08599 -12.86278 -12.75849 -12.63365 -12.50909 -12.29197 -11.76707 -11.69724 -11.46578 -11.12796 -11.01967 -10.29678 -10.11269 -9.76549 -9.50948 -9.38622 -8.68656 -8.34427 -6.13623 0.89606 1.23138 1.44510 1.44618 1.53573 1.55057 1.63344 1.72123 2.07290 2.27542 2.99574 3.12906 3.27639 3.49350 3.57026 3.67812 3.78128 3.90721 4.02020 4.10840 4.20525 4.24692 4.31697 4.36760 4.39090 4.44022 4.44716 4.58830 4.63376 4.64678 4.75880 4.77511 4.81278 4.83156 4.88466 5.07992 5.09195 5.19779 5.29103 5.31790 5.41332 5.66250 5.92629 6.16844 6.19513 6.28769 6.36057 6.78870 7.06325 7.08389 8.74652 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.035992 B = 0.001645 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.764007 B =17012.141061 C =17568.284283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.082 3.918 3 C -0.293 4.293 4 C 0.068 3.932 5 C 0.141 3.859 6 N -0.663 5.663 7 C 0.090 3.910 8 H 0.100 0.900 9 C -0.105 4.105 10 C 0.091 3.909 11 N -0.614 5.614 12 C 0.545 3.455 13 O -0.568 6.568 14 C -0.120 4.120 15 S -0.151 6.151 16 C -0.548 4.548 17 H 0.083 0.917 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 1.000 3.000 21 H -0.262 1.262 22 H -0.278 1.278 23 H -0.262 1.262 24 C 0.078 3.922 25 N -0.318 5.318 26 N -0.380 5.380 27 C 0.091 3.909 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.154 0.846 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.349 0.651 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.271 0.729 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.850 -30.583 -3.661 35.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.046 4.046 3 C -0.323 4.323 4 C -0.098 4.098 5 C 0.010 3.990 6 N -0.294 5.294 7 C -0.022 4.022 8 H 0.118 0.882 9 C -0.143 4.143 10 C -0.031 4.031 11 N -0.349 5.349 12 C 0.334 3.666 13 O -0.447 6.447 14 C -0.271 4.271 15 S 0.076 5.924 16 C -0.696 4.696 17 H 0.101 0.899 18 C -0.191 4.191 19 N -0.547 5.547 20 Si 0.821 3.179 21 H -0.186 1.186 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.046 4.046 25 N -0.141 5.141 26 N -0.163 5.163 27 C -0.049 4.049 28 H 0.110 0.890 29 H 0.107 0.893 30 H 0.112 0.888 31 H 0.172 0.828 32 H 0.079 0.921 33 H 0.104 0.896 34 H 0.169 0.831 35 H 0.123 0.877 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.079 0.921 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.894 -31.034 -4.572 36.114 hybrid contribution 0.736 1.421 0.771 1.776 sum -17.157 -29.614 -3.802 34.435 Atomic orbital electron populations 1.20591 0.84510 1.05194 1.04464 1.21688 0.96366 0.86764 0.99751 1.21430 0.91689 1.00110 1.19030 1.22241 0.95837 0.91596 1.00157 1.20252 0.92152 0.95946 0.90618 1.60532 1.08595 1.50570 1.09681 1.22705 0.92478 0.86781 1.00189 0.88239 1.22588 0.98980 0.95119 0.97606 1.22401 0.95976 0.86574 0.98147 1.48327 1.26110 1.05767 1.54734 1.19808 0.86100 0.81099 0.79629 1.90682 1.53185 1.55678 1.45188 1.23301 0.98535 1.01095 1.04146 1.85574 1.33374 1.00956 1.72499 1.23169 1.09556 0.97340 1.39512 0.89866 1.26139 1.02030 0.94573 0.96313 1.70177 1.40753 1.00765 1.43047 0.84989 0.76825 0.77437 0.78649 1.18606 1.20337 1.18623 1.23106 0.88371 0.95043 0.98110 1.77290 0.97907 1.13125 1.25829 1.48828 1.03288 1.07501 1.56725 1.22160 1.02171 0.76098 1.04493 0.88995 0.89333 0.88764 0.82823 0.92084 0.89607 0.83092 0.87736 0.89366 0.90073 0.90199 0.87523 0.87460 0.91956 0.91021 0.92057 0.89659 0.89377 0.86787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.49 10.12 71.24 0.72 0.23 16 2 C 0.08 1.18 6.93 41.41 0.29 1.47 16 3 C -0.29 -5.13 10.65 21.99 0.23 -4.89 16 4 C 0.07 1.37 6.73 43.10 0.29 1.66 16 5 C 0.14 2.44 6.11 85.56 0.52 2.96 16 6 N -0.66 -10.93 6.40 -488.40 -3.13 -14.06 16 7 C 0.09 1.51 3.38 46.31 0.16 1.67 16 8 H 0.10 1.67 7.83 -2.39 -0.02 1.65 16 9 C -0.10 -1.53 6.65 31.78 0.21 -1.32 16 10 C 0.09 1.78 6.49 86.73 0.56 2.35 16 11 N -0.61 -17.48 3.33 -811.79 -2.70 -20.18 16 12 C 0.55 21.71 7.87 87.66 0.69 22.40 16 13 O -0.57 -27.93 16.12 -3.03 -0.05 -27.98 16 14 C -0.12 -4.98 5.35 71.24 0.38 -4.60 16 15 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 16 C -0.55 -31.72 9.50 67.95 0.65 -31.08 16 17 H 0.08 4.45 7.80 -2.91 -0.02 4.43 16 18 C 0.01 0.82 5.49 84.86 0.47 1.29 16 19 N -0.91 -56.49 13.22 21.65 0.29 -56.20 16 20 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 21 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 24 C 0.08 1.83 6.50 86.86 0.56 2.39 16 25 N -0.32 -7.19 12.58 -47.38 -0.60 -7.78 16 26 N -0.38 -6.24 4.01 -356.02 -1.43 -7.67 16 27 C 0.09 0.66 11.27 127.77 1.44 2.10 16 28 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.09 0.16 7.08 -2.39 -0.02 0.14 16 30 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.52 8.09 -2.39 -0.02 1.50 16 34 H 0.35 5.56 8.18 -89.69 -0.73 4.83 16 35 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.11 4.04 8.14 -2.40 -0.02 4.02 16 40 H 0.11 4.05 8.14 -2.40 -0.02 4.03 16 41 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.07 1.60 7.75 -2.39 -0.02 1.58 16 43 H 0.06 1.64 8.04 -2.39 -0.02 1.62 16 44 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 45 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 46 H 0.11 0.14 7.05 -2.38 -0.02 0.13 16 Total: -1.00 -84.30 397.88 0.67 -83.63 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.25 Total: 17.53 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 7.17 Total: -3.38 kcal Atomic # 7 Polarization: -98.33 SS G_CDS: -7.57 Total: -105.90 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.05 Total: -27.98 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.61 SS G_CDS: -1.16 Total: -9.77 kcal Total: -84.30 0.67 -83.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181106831.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.010 kcal (2) G-P(sol) polarization free energy of solvation -84.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds