Wall clock time and date at job start Tue Mar 31 2020 21:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31793 * 119.12283 * 2 1 4 4 C 1.32333 * 120.81789 * 179.97438 * 3 2 1 5 5 C 1.38595 * 119.10482 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.80210 * 180.02562 * 5 4 3 7 7 N 1.46894 * 109.47383 * 89.99259 * 6 5 4 8 8 C 1.46895 * 111.00198 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47398 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47112 * 305.00414 * 9 8 7 11 11 C 1.53001 * 109.47100 * 65.00143 * 9 8 7 12 12 C 1.53003 * 109.47014 * 184.99735 * 9 8 7 13 13 N 1.46499 * 109.46708 * 174.99880 * 12 9 8 14 14 C 1.34784 * 119.99893 * 180.02562 * 13 12 9 15 15 O 1.21283 * 119.99649 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99774 * 179.72962 * 14 13 12 17 17 S 1.81008 * 109.46759 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99946 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99996 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00252 * 179.97438 * 18 17 16 21 21 N 1.31635 * 119.99702 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00159 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47239 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47003 * 120.00084 * 22 20 18 25 25 H 1.48500 * 109.46787 * 239.99933 * 22 20 18 26 26 C 1.38604 * 118.40265 * 0.27044 * 5 4 3 27 27 N 1.31794 * 119.11986 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.46836 * 89.99882 * 1 2 3 29 29 H 1.09002 * 109.46878 * 209.99752 * 1 2 3 30 30 H 1.08989 * 109.46787 * 329.99991 * 1 2 3 31 31 H 1.07994 * 120.44614 * 180.02562 * 4 3 2 32 32 H 1.09005 * 109.46714 * 329.99473 * 6 5 4 33 33 H 1.09004 * 109.47145 * 209.99866 * 6 5 4 34 34 H 1.00897 * 111.00146 * 303.96256 * 7 6 5 35 35 H 1.09001 * 109.47061 * 59.99910 * 8 7 6 36 36 H 1.08997 * 109.47148 * 300.00255 * 8 7 6 37 37 H 1.08999 * 109.47109 * 59.99648 * 11 9 8 38 38 H 1.08996 * 109.47478 * 180.02562 * 11 9 8 39 39 H 1.09005 * 109.47003 * 300.00163 * 11 9 8 40 40 H 1.08998 * 109.46692 * 55.00382 * 12 9 8 41 41 H 1.08994 * 109.47584 * 295.00246 * 12 9 8 42 42 H 0.97005 * 120.00261 * 0.02562 * 13 12 9 43 43 H 1.09001 * 109.46809 * 299.99238 * 16 14 13 44 44 H 1.08993 * 109.47525 * 59.99679 * 16 14 13 45 45 H 0.97000 * 119.99806 * 179.97438 * 21 20 18 46 46 H 1.07990 * 120.45159 * 179.72841 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1485 1.1513 0.0000 4 6 3.4712 1.1905 0.0005 5 6 4.1809 0.0000 0.0005 6 6 5.6879 -0.0001 0.0017 7 7 6.1766 -0.0006 1.3869 8 6 7.6450 0.0000 1.4272 9 6 8.1153 -0.0012 2.8831 10 1 7.6657 0.8399 3.4109 11 6 7.6925 -1.3093 3.5546 12 6 9.6395 0.1251 2.9268 13 7 10.0798 0.2440 4.3190 14 6 11.3917 0.3679 4.6026 15 8 12.2074 0.3813 3.7052 16 6 11.8441 0.4964 6.0343 17 16 13.6473 0.6457 6.0860 18 6 13.8936 0.7781 7.8257 19 1 13.0460 0.7532 8.4945 20 6 15.1769 0.9145 8.3366 21 7 16.2100 0.9444 7.5214 22 14 15.4380 1.0541 10.1810 23 1 14.1254 0.9933 10.8727 24 1 16.2953 -0.0658 10.6456 25 1 16.1008 2.3464 10.4905 26 6 3.4712 -1.1906 -0.0058 27 7 2.1484 -1.1514 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8899 0.5138 31 1 3.9907 2.1373 0.0009 32 1 6.0516 0.8901 -0.5116 33 1 6.0516 -0.8899 -0.5123 34 1 5.8007 0.7805 1.9032 35 1 8.0219 0.8904 0.9240 36 1 8.0226 -0.8896 0.9231 37 1 8.1420 -2.1505 3.0269 38 1 8.0271 -1.3100 4.5920 39 1 6.6066 -1.3993 3.5235 40 1 9.9466 1.0113 2.3716 41 1 10.0904 -0.7596 2.4774 42 1 9.4273 0.2337 5.0367 43 1 11.3936 1.3836 6.4794 44 1 11.5361 -0.3870 6.5934 45 1 17.1068 1.0400 7.8784 46 1 3.9907 -2.1373 -0.0104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267977942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:05 Heat of formation + Delta-G solvation = -3.554262 kcal Electronic energy + Delta-G solvation = -24757.867008 eV Core-core repulsion = 21001.274631 eV Total energy + Delta-G solvation = -3756.592377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.57776 -39.35468 -37.85454 -35.76842 -34.19289 -33.77873 -32.43525 -32.21228 -29.77875 -29.13631 -26.78027 -25.80113 -25.38981 -25.16804 -23.81482 -22.27321 -20.72636 -20.27278 -18.28469 -17.85566 -17.24125 -16.44585 -16.37837 -16.10194 -15.72729 -15.56824 -15.12883 -14.84548 -14.80641 -14.36639 -14.12286 -13.93714 -13.75865 -13.49217 -13.24742 -13.05977 -12.92725 -12.80260 -12.77997 -12.61057 -12.49993 -11.86316 -11.52699 -11.30750 -11.27159 -11.14376 -11.08165 -11.06608 -11.02216 -10.75577 -9.84634 -9.80545 -9.69762 -9.41006 -9.08315 -8.98252 -8.87681 -8.23649 -6.50465 -6.22386 -3.92807 0.33268 0.60537 3.00265 3.10095 3.16994 3.21114 3.28037 3.32586 3.46077 3.62356 3.66037 3.85479 4.09938 4.17922 4.19881 4.29387 4.51017 4.61108 4.72149 4.74408 4.93228 5.02082 5.04844 5.10833 5.12937 5.13514 5.19888 5.27105 5.33614 5.41087 5.46298 5.56892 5.64174 5.75334 5.76731 5.89202 5.92317 5.99447 6.10106 6.13744 6.35513 6.48883 6.62511 6.76554 7.59418 7.60367 7.70538 8.34941 8.61411 9.23199 10.85145 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033662 B = 0.001370 C = 0.001345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.603352 B =20432.313387 C =20813.294784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.314 3.686 3 N -0.520 5.520 4 C 0.157 3.843 5 C -0.196 4.196 6 C 0.108 3.892 7 N -0.683 5.683 8 C 0.066 3.934 9 C -0.100 4.100 10 H 0.075 0.925 11 C -0.140 4.140 12 C 0.126 3.874 13 N -0.737 5.737 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.173 3.827 27 N -0.520 5.520 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.165 0.835 32 H 0.047 0.953 33 H 0.088 0.912 34 H 0.342 0.658 35 H 0.037 0.963 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.902 -2.191 -15.882 33.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.047 3.953 3 N -0.234 5.234 4 C -0.010 4.010 5 C -0.200 4.200 6 C -0.022 4.022 7 N -0.314 5.314 8 C -0.064 4.064 9 C -0.119 4.119 10 H 0.094 0.906 11 C -0.197 4.197 12 C 0.002 3.998 13 N -0.392 5.392 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C 0.007 3.993 27 N -0.234 5.234 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.182 0.818 32 H 0.065 0.935 33 H 0.107 0.893 34 H 0.160 0.840 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.232 0.768 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -29.392 -2.847 -17.346 34.247 hybrid contribution 0.182 1.028 2.303 2.528 sum -29.210 -1.819 -15.043 32.906 Atomic orbital electron populations 1.20587 0.85674 1.04310 1.03934 1.23325 0.98339 0.83506 0.90122 1.68292 1.09934 1.30564 1.14591 1.23167 0.89623 0.98240 0.89962 1.21551 0.98232 0.95659 1.04582 1.20695 0.88526 1.02370 0.90609 1.60487 1.08313 1.50363 1.12201 1.21942 0.86728 1.01464 0.96239 1.21345 0.94640 0.99862 0.96054 0.90639 1.21753 1.02063 0.96022 0.99889 1.21243 0.92812 1.02117 0.83675 1.45985 1.07895 1.77160 1.08182 1.20307 0.81552 0.75242 0.91178 1.90701 1.52462 1.47961 1.48164 1.23530 1.07139 1.04830 0.94917 1.85396 0.92612 1.95602 1.09830 1.22913 0.95566 1.58119 0.91740 0.90879 1.24991 0.94928 0.94567 0.99075 1.70031 0.98835 1.46681 1.34757 0.86118 0.78362 0.77935 0.83090 1.19616 1.20554 1.20569 1.23185 0.89183 0.98450 0.88507 1.68331 1.10120 1.30440 1.14514 0.89570 0.89511 0.89562 0.81765 0.93516 0.89320 0.84012 0.94447 0.90168 0.92602 0.92943 0.91490 0.91803 0.91481 0.76814 0.89257 0.89239 0.92238 0.81323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.32 36.01 0.37 -0.08 16 2 C 0.31 2.59 7.64 -157.19 -1.20 1.39 16 3 N -0.52 -4.39 10.33 -10.73 -0.11 -4.50 16 4 C 0.16 1.00 11.01 -17.20 -0.19 0.82 16 5 C -0.20 -1.13 5.43 -104.35 -0.57 -1.69 16 6 C 0.11 0.47 5.86 -4.98 -0.03 0.44 16 7 N -0.68 -3.56 5.94 -115.06 -0.68 -4.24 16 8 C 0.07 0.39 5.07 -3.83 -0.02 0.37 16 9 C -0.10 -0.72 2.57 -90.62 -0.23 -0.95 16 10 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 11 C -0.14 -1.05 8.95 37.16 0.33 -0.72 16 12 C 0.13 1.35 5.06 -4.04 -0.02 1.33 16 13 N -0.74 -9.46 5.28 -60.30 -0.32 -9.78 16 14 C 0.53 9.79 7.85 -10.98 -0.09 9.71 16 15 O -0.52 -11.71 15.86 5.56 0.09 -11.63 16 16 C -0.15 -3.08 6.16 36.00 0.22 -2.85 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 22 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 26 C 0.17 1.18 11.01 -17.20 -0.19 0.99 16 27 N -0.52 -4.48 10.33 -10.72 -0.11 -4.59 16 28 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.38 8.14 -51.94 -0.42 -0.04 16 31 H 0.17 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.05 0.17 8.10 -51.93 -0.42 -0.25 16 33 H 0.09 0.35 8.10 -51.93 -0.42 -0.07 16 34 H 0.34 1.70 8.72 -39.29 -0.34 1.36 16 35 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.05 0.41 7.18 -51.93 -0.37 0.04 16 39 H 0.07 0.50 7.75 -51.93 -0.40 0.09 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.40 4.02 7.65 -40.82 -0.31 3.71 16 43 H 0.09 1.65 8.14 -51.91 -0.42 1.23 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 403.66 15.07 6.08 6.08 Total: -1.00 -36.09 403.66 -10.28 -46.37 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -7.31 Total: -0.57 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -1.41 Total: -4.20 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: -0.49 Total: -48.53 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.09 -10.28 -46.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267977942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.811 kcal (2) G-P(sol) polarization free energy of solvation -36.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds