Wall clock time and date at job start Tue Mar 31 2020 21:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31793 * 119.12283 * 2 1 4 4 C 1.32333 * 120.81789 * 179.97438 * 3 2 1 5 5 C 1.38595 * 119.10482 * 0.02562 * 4 3 2 6 6 C 1.50704 * 120.80210 * 180.02562 * 5 4 3 7 7 N 1.46894 * 109.47383 * 89.99259 * 6 5 4 8 8 C 1.46895 * 111.00198 * 180.02562 * 7 6 5 9 9 C 1.53001 * 109.47398 * 180.02562 * 8 7 6 10 10 H 1.09001 * 109.47112 * 305.00414 * 9 8 7 11 11 C 1.53001 * 109.47100 * 65.00143 * 9 8 7 12 12 C 1.53003 * 109.47014 * 184.99735 * 9 8 7 13 13 N 1.46499 * 109.46708 * 174.99880 * 12 9 8 14 14 C 1.34784 * 119.99893 * 180.02562 * 13 12 9 15 15 O 1.21283 * 119.99649 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.99774 * 179.72962 * 14 13 12 17 17 S 1.81008 * 109.46759 * 180.02562 * 16 14 13 18 18 C 1.76198 * 99.99946 * 179.97438 * 17 16 14 19 19 H 1.08000 * 119.99996 * 359.97438 * 18 17 16 20 20 C 1.38798 * 120.00252 * 179.97438 * 18 17 16 21 21 N 1.31635 * 119.99702 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00159 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47239 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47003 * 120.00084 * 22 20 18 25 25 H 1.48500 * 109.46787 * 239.99933 * 22 20 18 26 26 C 1.38604 * 118.40265 * 0.27044 * 5 4 3 27 27 N 1.31794 * 119.11986 * 179.97438 * 2 1 3 28 28 H 1.09005 * 109.46836 * 89.99882 * 1 2 3 29 29 H 1.09002 * 109.46878 * 209.99752 * 1 2 3 30 30 H 1.08989 * 109.46787 * 329.99991 * 1 2 3 31 31 H 1.07994 * 120.44614 * 180.02562 * 4 3 2 32 32 H 1.09005 * 109.46714 * 329.99473 * 6 5 4 33 33 H 1.09004 * 109.47145 * 209.99866 * 6 5 4 34 34 H 1.00897 * 111.00146 * 303.96256 * 7 6 5 35 35 H 1.09001 * 109.47061 * 59.99910 * 8 7 6 36 36 H 1.08997 * 109.47148 * 300.00255 * 8 7 6 37 37 H 1.08999 * 109.47109 * 59.99648 * 11 9 8 38 38 H 1.08996 * 109.47478 * 180.02562 * 11 9 8 39 39 H 1.09005 * 109.47003 * 300.00163 * 11 9 8 40 40 H 1.08998 * 109.46692 * 55.00382 * 12 9 8 41 41 H 1.08994 * 109.47584 * 295.00246 * 12 9 8 42 42 H 0.97005 * 120.00261 * 0.02562 * 13 12 9 43 43 H 1.09001 * 109.46809 * 299.99238 * 16 14 13 44 44 H 1.08993 * 109.47525 * 59.99679 * 16 14 13 45 45 H 0.97000 * 119.99806 * 179.97438 * 21 20 18 46 46 H 1.07990 * 120.45159 * 179.72841 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1485 1.1513 0.0000 4 6 3.4712 1.1905 0.0005 5 6 4.1809 0.0000 0.0005 6 6 5.6879 -0.0001 0.0017 7 7 6.1766 -0.0006 1.3869 8 6 7.6450 0.0000 1.4272 9 6 8.1153 -0.0012 2.8831 10 1 7.6657 0.8399 3.4109 11 6 7.6925 -1.3093 3.5546 12 6 9.6395 0.1251 2.9268 13 7 10.0798 0.2440 4.3190 14 6 11.3917 0.3679 4.6026 15 8 12.2074 0.3813 3.7052 16 6 11.8441 0.4964 6.0343 17 16 13.6473 0.6457 6.0860 18 6 13.8936 0.7781 7.8257 19 1 13.0460 0.7532 8.4945 20 6 15.1769 0.9145 8.3366 21 7 16.2100 0.9444 7.5214 22 14 15.4380 1.0541 10.1810 23 1 14.1254 0.9933 10.8727 24 1 16.2953 -0.0658 10.6456 25 1 16.1008 2.3464 10.4905 26 6 3.4712 -1.1906 -0.0058 27 7 2.1484 -1.1514 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3632 0.8899 0.5138 31 1 3.9907 2.1373 0.0009 32 1 6.0516 0.8901 -0.5116 33 1 6.0516 -0.8899 -0.5123 34 1 5.8007 0.7805 1.9032 35 1 8.0219 0.8904 0.9240 36 1 8.0226 -0.8896 0.9231 37 1 8.1420 -2.1505 3.0269 38 1 8.0271 -1.3100 4.5920 39 1 6.6066 -1.3993 3.5235 40 1 9.9466 1.0113 2.3716 41 1 10.0904 -0.7596 2.4774 42 1 9.4273 0.2337 5.0367 43 1 11.3936 1.3836 6.4794 44 1 11.5361 -0.3870 6.5934 45 1 17.1068 1.0400 7.8784 46 1 3.9907 -2.1373 -0.0104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267977942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:34:04 Heat of formation + Delta-G solvation = -29.815959 kcal Electronic energy + Delta-G solvation = -24759.005800 eV Core-core repulsion = 21001.274631 eV Total energy + Delta-G solvation = -3757.731170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.06829 -40.67640 -38.53910 -36.54173 -34.71326 -34.61101 -34.55348 -32.99197 -30.90950 -29.91395 -27.75775 -27.38678 -26.34737 -25.65664 -24.40288 -22.72272 -21.77090 -21.28902 -19.80350 -18.78492 -17.85569 -17.64190 -17.38810 -16.87983 -16.79461 -16.55231 -16.33738 -16.04115 -15.76369 -15.39813 -15.12660 -14.66318 -14.55973 -14.46880 -14.28522 -14.09061 -13.76840 -13.49583 -13.36345 -13.26821 -13.18388 -13.15443 -13.01167 -12.90444 -12.60363 -12.08578 -11.99563 -11.86153 -11.74064 -11.69885 -11.64846 -11.15664 -10.94948 -10.30065 -10.26829 -10.22259 -10.08996 -9.37152 -8.66306 -8.34715 -6.12587 -0.15401 0.11129 1.27798 1.41566 1.47786 1.58842 1.62831 2.26012 2.30587 2.67705 2.99720 3.03150 3.21351 3.26301 3.34063 3.67764 3.77121 3.87106 3.89376 3.93747 4.07919 4.13254 4.30347 4.31086 4.51775 4.53596 4.54590 4.61737 4.69411 4.71360 4.74551 4.80880 4.85838 4.98925 5.01946 5.05796 5.14223 5.30140 5.42448 5.45116 5.47528 5.52813 5.92785 6.01950 6.20289 6.38269 6.52061 7.06958 7.09295 7.26027 8.74822 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033662 B = 0.001370 C = 0.001345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.603352 B =20432.313387 C =20813.294784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.296 3.704 3 N -0.542 5.542 4 C 0.149 3.851 5 C -0.188 4.188 6 C 0.113 3.887 7 N -0.685 5.685 8 C 0.071 3.929 9 C -0.086 4.086 10 H 0.087 0.913 11 C -0.137 4.137 12 C 0.125 3.875 13 N -0.711 5.711 14 C 0.533 3.467 15 O -0.567 6.567 16 C -0.130 4.130 17 S -0.152 6.152 18 C -0.546 4.546 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.161 3.839 27 N -0.543 5.543 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.188 0.812 32 H 0.059 0.941 33 H 0.095 0.905 34 H 0.345 0.655 35 H 0.042 0.958 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.415 0.585 43 H 0.110 0.890 44 H 0.109 0.891 45 H 0.271 0.729 46 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.744 -2.008 -14.889 35.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.029 3.971 3 N -0.256 5.256 4 C -0.017 4.017 5 C -0.192 4.192 6 C -0.017 4.017 7 N -0.316 5.316 8 C -0.058 4.058 9 C -0.105 4.105 10 H 0.106 0.894 11 C -0.194 4.194 12 C 0.001 3.999 13 N -0.365 5.365 14 C 0.318 3.682 15 O -0.446 6.446 16 C -0.282 4.282 17 S 0.075 5.925 18 C -0.694 4.694 19 H 0.101 0.899 20 C -0.190 4.190 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.004 4.004 27 N -0.258 5.258 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.110 0.890 31 H 0.204 0.796 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.163 0.837 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.252 0.748 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.080 0.920 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -31.304 -2.671 -16.350 35.417 hybrid contribution 0.651 0.951 1.907 2.229 sum -30.653 -1.720 -14.442 33.928 Atomic orbital electron populations 1.20656 0.84255 1.04747 1.04669 1.23801 0.99509 0.83522 0.90246 1.68334 1.11005 1.30792 1.15508 1.23613 0.89279 0.99499 0.89272 1.21623 0.98826 0.95053 1.03693 1.20690 0.87415 1.03273 0.90272 1.60443 1.07705 1.50672 1.12786 1.21835 0.87203 1.01686 0.95108 1.21225 0.91743 1.00210 0.97297 0.89425 1.21722 1.02281 0.95808 0.99596 1.21403 0.95229 1.01445 0.81844 1.45745 1.06138 1.74609 1.09982 1.20050 0.82960 0.75279 0.89886 1.90690 1.54171 1.50677 1.49033 1.23380 1.01311 1.06643 0.96829 1.85570 1.00125 1.95979 1.10814 1.23245 0.96279 1.58072 0.91806 0.89924 1.26113 0.94481 0.93797 1.04653 1.70191 0.99467 1.47797 1.37350 0.84911 0.78842 0.78064 0.76168 1.18029 1.19945 1.19935 1.23561 0.88969 0.99653 0.88262 1.68359 1.11098 1.30816 1.15497 0.88622 0.89084 0.89049 0.79559 0.92320 0.88714 0.83658 0.94016 0.90285 0.93276 0.93184 0.90997 0.92323 0.92455 0.74786 0.87226 0.87281 0.91995 0.79795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.85 10.32 71.24 0.74 -0.11 16 2 C 0.30 4.75 7.64 138.75 1.06 5.81 16 3 N -0.54 -8.75 10.33 -187.85 -1.94 -10.70 16 4 C 0.15 1.70 11.01 84.70 0.93 2.63 16 5 C -0.19 -1.85 5.43 -19.69 -0.11 -1.95 16 6 C 0.11 0.72 5.86 85.56 0.50 1.22 16 7 N -0.68 -5.35 5.94 -517.94 -3.08 -8.43 16 8 C 0.07 0.66 5.07 86.30 0.44 1.10 16 9 C -0.09 -1.01 2.57 -10.79 -0.03 -1.04 16 10 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 11 C -0.14 -1.73 8.95 71.98 0.64 -1.09 16 12 C 0.12 2.47 5.06 86.38 0.44 2.90 16 13 N -0.71 -16.84 5.28 -463.06 -2.45 -19.28 16 14 C 0.53 19.21 7.85 87.65 0.69 19.90 16 15 O -0.57 -25.98 15.86 -3.04 -0.05 -26.03 16 16 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 17 S -0.15 -8.41 20.57 -56.49 -1.16 -9.58 16 18 C -0.55 -31.09 9.50 67.95 0.65 -30.45 16 19 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 20 C 0.01 0.81 5.49 84.86 0.47 1.28 16 21 N -0.91 -55.88 13.22 21.65 0.29 -55.59 16 22 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 23 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 26 C 0.16 2.02 11.01 84.70 0.93 2.95 16 27 N -0.54 -9.10 10.33 -187.84 -1.94 -11.04 16 28 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.19 1.07 8.06 -2.91 -0.02 1.04 16 32 H 0.06 0.27 8.10 -2.38 -0.02 0.25 16 33 H 0.09 0.52 8.10 -2.38 -0.02 0.51 16 34 H 0.35 2.45 8.72 -89.70 -0.78 1.67 16 35 H 0.04 0.37 8.14 -2.39 -0.02 0.36 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.05 0.65 7.18 -2.39 -0.02 0.64 16 39 H 0.07 0.88 7.75 -2.38 -0.02 0.86 16 40 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.41 7.14 7.65 -92.70 -0.71 6.43 16 43 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 44 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 45 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 46 H 0.19 1.50 8.06 -2.92 -0.02 1.48 16 Total: -1.00 -80.25 403.66 -1.02 -81.27 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -0.50 Total: 15.43 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 7.79 Total: -1.49 kcal Atomic # 7 Polarization: -95.92 SS G_CDS: -9.12 Total: -105.04 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.05 Total: -26.03 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -8.41 SS G_CDS: -1.16 Total: -9.58 kcal Total: -80.25 -1.02 -81.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267977942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.452 kcal (2) G-P(sol) polarization free energy of solvation -80.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds