Wall clock time and date at job start Tue Mar 31 2020 21:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38391 * 119.99944 * 2 1 4 4 N 1.32125 * 119.99805 * 179.97438 * 3 2 1 5 5 C 1.32157 * 119.99822 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99683 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.47183 * 275.00346 * 6 5 4 8 8 C 1.46901 * 110.99793 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46769 * 180.02562 * 8 7 6 10 10 H 1.08991 * 109.47625 * 64.99793 * 9 8 7 11 11 C 1.53006 * 109.46846 * 185.00040 * 9 8 7 12 12 N 1.46504 * 109.47054 * 304.99530 * 9 8 7 13 13 C 1.46501 * 119.99985 * 300.00126 * 12 9 8 14 14 C 1.34769 * 119.99842 * 120.00126 * 12 9 8 15 15 O 1.21282 * 120.00124 * 0.02562 * 14 12 9 16 16 C 1.50702 * 120.00105 * 179.97438 * 14 12 9 17 17 S 1.81003 * 109.47131 * 180.02562 * 16 14 12 18 18 C 1.76207 * 99.99784 * 180.02562 * 17 16 14 19 19 H 1.07992 * 119.99899 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99524 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99509 * 179.97438 * 20 18 17 22 22 Si 1.86792 * 120.00283 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46910 * 90.00684 * 22 20 18 24 24 H 1.48498 * 109.47197 * 210.00536 * 22 20 18 25 25 H 1.48499 * 109.47567 * 330.00537 * 22 20 18 26 26 C 1.38337 * 120.00015 * 0.25939 * 5 4 3 27 27 N 1.32119 * 120.00219 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47020 * 90.00353 * 1 2 3 29 29 H 1.08999 * 109.47457 * 209.99877 * 1 2 3 30 30 H 1.08994 * 109.47136 * 330.00288 * 1 2 3 31 31 H 1.08000 * 120.00298 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.46796 * 155.00550 * 6 5 4 33 33 H 1.09002 * 109.47497 * 35.00344 * 6 5 4 34 34 H 1.00899 * 110.99995 * 56.04682 * 7 6 5 35 35 H 1.09002 * 109.47401 * 59.99808 * 8 7 6 36 36 H 1.09001 * 109.46874 * 299.99821 * 8 7 6 37 37 H 1.09001 * 109.47241 * 59.99481 * 11 9 8 38 38 H 1.08996 * 109.46751 * 179.97438 * 11 9 8 39 39 H 1.09002 * 109.46824 * 299.99583 * 11 9 8 40 40 H 1.09007 * 109.47000 * 90.00260 * 13 12 9 41 41 H 1.09002 * 109.46858 * 209.99725 * 13 12 9 42 42 H 1.08994 * 109.47526 * 330.00378 * 13 12 9 43 43 H 1.09001 * 109.46860 * 299.99839 * 16 14 12 44 44 H 1.08997 * 109.47036 * 59.99998 * 16 14 12 45 45 H 0.96998 * 119.99748 * 179.97438 * 21 20 18 46 46 H 1.08003 * 119.99941 * 179.71834 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5202 1.1985 0.0005 5 6 4.1809 0.0539 0.0015 6 6 5.6879 0.0539 0.0015 7 7 6.1776 0.1735 -1.3783 8 6 7.6461 0.1763 -1.4174 9 6 8.1174 0.3026 -2.8675 10 1 7.8166 1.2721 -3.2642 11 6 9.6417 0.1803 -2.9208 12 7 7.5137 -0.7628 -3.6717 13 6 7.7682 -2.1664 -3.3378 14 6 6.7242 -0.4517 -4.7187 15 8 6.5139 0.7103 -4.9954 16 6 6.1037 -1.5475 -5.5464 17 16 5.1073 -0.8149 -6.8680 18 6 4.5181 -2.2778 -7.6538 19 1 4.8055 -3.2474 -7.2750 20 6 3.6853 -2.1839 -8.7603 21 7 3.2456 -3.2767 -9.3476 22 14 3.1888 -0.5067 -9.4159 23 1 4.1759 -0.0602 -10.4314 24 1 1.8439 -0.5972 -10.0390 25 1 3.1517 0.4705 -8.2984 26 6 3.4892 -1.1441 -0.0034 27 7 2.1676 -1.1442 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6590 2.1338 -0.0004 32 1 6.0512 -0.8771 0.4366 33 1 6.0513 0.8962 0.5903 34 1 5.8021 0.9965 -1.8252 35 1 8.0227 -0.7541 -0.9922 36 1 8.0233 1.0192 -0.8383 37 1 9.9425 -0.7893 -2.5240 38 1 9.9774 0.2699 -3.9539 39 1 10.0908 0.9730 -2.3224 40 1 7.0105 -2.5162 -2.6366 41 1 7.7289 -2.7686 -4.2455 42 1 8.7544 -2.2586 -2.8829 43 1 6.8904 -2.1626 -5.9834 44 1 5.4686 -2.1663 -4.9125 45 1 2.6634 -3.2111 -10.1206 46 1 4.0292 -2.0794 -0.0071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268049222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:17 Heat of formation + Delta-G solvation = 13.164470 kcal Electronic energy + Delta-G solvation = -26738.424004 eV Core-core repulsion = 22982.556606 eV Total energy + Delta-G solvation = -3755.867398 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.32332 -39.71265 -37.15555 -35.58328 -34.33309 -33.13031 -32.39702 -31.96540 -29.26265 -28.68444 -26.78996 -26.09815 -25.56509 -24.88547 -23.92482 -21.99643 -21.54436 -19.08756 -17.99187 -17.65135 -17.01006 -16.72445 -16.09011 -15.74543 -15.63656 -15.43096 -15.02128 -14.84940 -14.65296 -14.33977 -13.87816 -13.40386 -13.24921 -13.09333 -13.03036 -12.93779 -12.74972 -12.66720 -12.60290 -12.32338 -12.20866 -12.09933 -11.92592 -11.73054 -11.60067 -11.25179 -11.21599 -10.98149 -10.96463 -10.51767 -9.81810 -9.35716 -9.29156 -9.26309 -8.96224 -8.65562 -8.43694 -8.40070 -6.85619 -6.24943 -3.95428 0.55641 0.96396 2.80022 3.09218 3.26260 3.35689 3.38064 3.53732 3.66125 3.75232 3.95701 4.11694 4.27398 4.36930 4.46691 4.60184 4.77392 4.81171 4.86433 4.96814 5.11683 5.12715 5.14359 5.18862 5.25705 5.27593 5.31061 5.31373 5.37990 5.38600 5.46090 5.51714 5.55265 5.71112 5.82451 5.87343 5.93244 6.02255 6.11369 6.18008 6.62718 6.77524 7.06117 7.14971 7.60376 7.61017 7.98384 8.45962 8.59222 9.21702 10.84469 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007772 B = 0.003732 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3601.682988 B = 7499.904231 C =10123.470015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.079 3.921 3 C 0.052 3.948 4 N -0.432 5.432 5 C 0.072 3.928 6 C 0.117 3.883 7 N -0.677 5.677 8 C 0.052 3.948 9 C 0.138 3.862 10 H 0.100 0.900 11 C -0.159 4.159 12 N -0.601 5.601 13 C 0.082 3.918 14 C 0.538 3.462 15 O -0.526 6.526 16 C -0.118 4.118 17 S -0.146 6.146 18 C -0.519 4.519 19 H 0.087 0.913 20 C 0.096 3.904 21 N -0.882 5.882 22 Si 0.856 3.144 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.236 1.236 26 C 0.080 3.920 27 N -0.439 5.439 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.168 0.832 32 H 0.090 0.910 33 H 0.049 0.951 34 H 0.351 0.649 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.058 0.942 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.270 0.730 46 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.042 5.677 23.955 25.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.062 4.062 3 C -0.109 4.109 4 N -0.147 5.147 5 C -0.068 4.068 6 C -0.013 4.013 7 N -0.309 5.309 8 C -0.078 4.078 9 C 0.033 3.967 10 H 0.118 0.882 11 C -0.218 4.218 12 N -0.336 5.336 13 C -0.062 4.062 14 C 0.326 3.674 15 O -0.401 6.401 16 C -0.268 4.268 17 S 0.081 5.919 18 C -0.666 4.666 19 H 0.105 0.895 20 C -0.113 4.113 21 N -0.519 5.519 22 Si 0.681 3.319 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.160 1.160 26 C -0.081 4.081 27 N -0.154 5.154 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.185 0.815 32 H 0.108 0.892 33 H 0.067 0.933 34 H 0.170 0.830 35 H 0.095 0.905 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.080 0.920 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 5.581 6.630 23.283 24.844 hybrid contribution 0.102 -0.128 0.157 0.227 sum 5.683 6.502 23.440 24.980 Atomic orbital electron populations 1.20705 0.87674 1.03757 1.03863 1.22358 0.98613 0.89723 0.95489 1.23562 0.90487 0.99258 0.97565 1.68204 1.08896 1.29504 1.08065 1.22055 0.97605 0.89816 0.97371 1.20672 0.87392 1.02184 0.91029 1.60385 1.07751 1.47729 1.15022 1.22356 0.87636 1.01197 0.96585 1.20996 0.92500 0.93278 0.89897 0.88243 1.22097 0.94648 1.02150 1.02898 1.47551 1.49598 1.06397 1.30055 1.21707 1.00993 0.81754 1.01699 1.20167 0.77455 0.90060 0.79683 1.90662 1.59847 1.20591 1.69047 1.23280 1.02679 1.00113 1.00746 1.84754 1.60344 1.14136 1.32710 1.22324 1.35147 0.92235 1.16919 0.89467 1.24699 0.94316 0.97086 0.95156 1.69941 1.33061 1.27629 1.21219 0.86742 0.78762 0.84958 0.81442 1.19232 1.20008 1.15974 1.23558 0.90332 0.99273 0.94899 1.68335 1.08760 1.29321 1.09023 0.89608 0.90155 0.90278 0.81483 0.89150 0.93272 0.82958 0.90517 0.94179 0.92146 0.91712 0.91609 0.92363 0.91008 0.91629 0.88845 0.88631 0.92013 0.81383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.19 36.01 0.37 -0.42 16 2 C 0.08 0.86 6.79 -82.41 -0.56 0.30 16 3 C 0.05 0.55 10.88 -17.37 -0.19 0.36 16 4 N -0.43 -5.27 10.42 -9.29 -0.10 -5.36 16 5 C 0.07 0.81 6.30 -82.42 -0.52 0.29 16 6 C 0.12 1.06 6.01 -4.97 -0.03 1.03 16 7 N -0.68 -7.31 6.21 -115.05 -0.71 -8.02 16 8 C 0.05 0.46 4.98 -3.82 -0.02 0.44 16 9 C 0.14 1.51 2.88 -67.92 -0.20 1.31 16 10 H 0.10 1.35 6.90 -51.93 -0.36 0.99 16 11 C -0.16 -1.35 9.17 37.16 0.34 -1.01 16 12 N -0.60 -7.99 2.48 -173.93 -0.43 -8.42 16 13 C 0.08 0.84 9.40 59.85 0.56 1.41 16 14 C 0.54 9.91 7.69 -10.99 -0.08 9.83 16 15 O -0.53 -11.51 15.19 5.56 0.08 -11.43 16 16 C -0.12 -2.38 4.71 36.01 0.17 -2.21 16 17 S -0.15 -3.81 18.55 -107.50 -1.99 -5.80 16 18 C -0.52 -15.25 10.04 30.94 0.31 -14.94 16 19 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 20 C 0.10 2.85 5.50 -17.43 -0.10 2.76 16 21 N -0.88 -26.99 13.97 55.49 0.78 -26.22 16 22 Si 0.86 22.23 27.74 -169.99 -4.71 17.51 16 23 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.24 -6.14 6.74 56.52 0.38 -5.76 16 26 C 0.08 0.91 10.86 -17.38 -0.19 0.72 16 27 N -0.44 -5.56 10.42 -9.29 -0.10 -5.66 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.09 0.63 8.05 -51.93 -0.42 0.21 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.35 4.61 8.72 -39.29 -0.34 4.27 16 35 H 0.08 0.57 7.84 -51.93 -0.41 0.16 16 36 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.43 6.66 -51.93 -0.35 0.08 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 42 H 0.07 0.50 6.43 -51.93 -0.33 0.17 16 43 H 0.09 1.77 7.40 -51.91 -0.38 1.38 16 44 H 0.10 1.87 8.11 -51.92 -0.42 1.45 16 45 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.17 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -36.32 395.44 -8.51 -44.83 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -7.15 Total: 2.73 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -0.13 Total: -0.13 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.57 Total: -53.68 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.51 kcal Atomic # 16 Polarization: -3.81 SS G_CDS: -1.99 Total: -5.80 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.32 -8.51 -44.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268049222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.997 kcal (2) G-P(sol) polarization free energy of solvation -36.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds