Wall clock time and date at job start Tue Mar 31 2020 21:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38391 * 119.99944 * 2 1 4 4 N 1.32125 * 119.99805 * 179.97438 * 3 2 1 5 5 C 1.32157 * 119.99822 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99683 * 179.97438 * 5 4 3 7 7 N 1.46906 * 109.47183 * 275.00346 * 6 5 4 8 8 C 1.46901 * 110.99793 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46769 * 180.02562 * 8 7 6 10 10 H 1.08991 * 109.47625 * 64.99793 * 9 8 7 11 11 C 1.53006 * 109.46846 * 185.00040 * 9 8 7 12 12 N 1.46504 * 109.47054 * 304.99530 * 9 8 7 13 13 C 1.46501 * 119.99985 * 300.00126 * 12 9 8 14 14 C 1.34769 * 119.99842 * 120.00126 * 12 9 8 15 15 O 1.21282 * 120.00124 * 0.02562 * 14 12 9 16 16 C 1.50702 * 120.00105 * 179.97438 * 14 12 9 17 17 S 1.81003 * 109.47131 * 180.02562 * 16 14 12 18 18 C 1.76207 * 99.99784 * 180.02562 * 17 16 14 19 19 H 1.07992 * 119.99899 * 359.97438 * 18 17 16 20 20 C 1.38801 * 119.99524 * 180.02562 * 18 17 16 21 21 N 1.31628 * 119.99509 * 179.97438 * 20 18 17 22 22 Si 1.86792 * 120.00283 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46910 * 90.00684 * 22 20 18 24 24 H 1.48498 * 109.47197 * 210.00536 * 22 20 18 25 25 H 1.48499 * 109.47567 * 330.00537 * 22 20 18 26 26 C 1.38337 * 120.00015 * 0.25939 * 5 4 3 27 27 N 1.32119 * 120.00219 * 179.97438 * 2 1 3 28 28 H 1.09004 * 109.47020 * 90.00353 * 1 2 3 29 29 H 1.08999 * 109.47457 * 209.99877 * 1 2 3 30 30 H 1.08994 * 109.47136 * 330.00288 * 1 2 3 31 31 H 1.08000 * 120.00298 * 359.97438 * 3 2 1 32 32 H 1.08995 * 109.46796 * 155.00550 * 6 5 4 33 33 H 1.09002 * 109.47497 * 35.00344 * 6 5 4 34 34 H 1.00899 * 110.99995 * 56.04682 * 7 6 5 35 35 H 1.09002 * 109.47401 * 59.99808 * 8 7 6 36 36 H 1.09001 * 109.46874 * 299.99821 * 8 7 6 37 37 H 1.09001 * 109.47241 * 59.99481 * 11 9 8 38 38 H 1.08996 * 109.46751 * 179.97438 * 11 9 8 39 39 H 1.09002 * 109.46824 * 299.99583 * 11 9 8 40 40 H 1.09007 * 109.47000 * 90.00260 * 13 12 9 41 41 H 1.09002 * 109.46858 * 209.99725 * 13 12 9 42 42 H 1.08994 * 109.47526 * 330.00378 * 13 12 9 43 43 H 1.09001 * 109.46860 * 299.99839 * 16 14 12 44 44 H 1.08997 * 109.47036 * 59.99998 * 16 14 12 45 45 H 0.96998 * 119.99748 * 179.97438 * 21 20 18 46 46 H 1.08003 * 119.99941 * 179.71834 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5202 1.1985 0.0005 5 6 4.1809 0.0539 0.0015 6 6 5.6879 0.0539 0.0015 7 7 6.1776 0.1735 -1.3783 8 6 7.6461 0.1763 -1.4174 9 6 8.1174 0.3026 -2.8675 10 1 7.8166 1.2721 -3.2642 11 6 9.6417 0.1803 -2.9208 12 7 7.5137 -0.7628 -3.6717 13 6 7.7682 -2.1664 -3.3378 14 6 6.7242 -0.4517 -4.7187 15 8 6.5139 0.7103 -4.9954 16 6 6.1037 -1.5475 -5.5464 17 16 5.1073 -0.8149 -6.8680 18 6 4.5181 -2.2778 -7.6538 19 1 4.8055 -3.2474 -7.2750 20 6 3.6853 -2.1839 -8.7603 21 7 3.2456 -3.2767 -9.3476 22 14 3.1888 -0.5067 -9.4159 23 1 4.1759 -0.0602 -10.4314 24 1 1.8439 -0.5972 -10.0390 25 1 3.1517 0.4705 -8.2984 26 6 3.4892 -1.1441 -0.0034 27 7 2.1676 -1.1442 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6590 2.1338 -0.0004 32 1 6.0512 -0.8771 0.4366 33 1 6.0513 0.8962 0.5903 34 1 5.8021 0.9965 -1.8252 35 1 8.0227 -0.7541 -0.9922 36 1 8.0233 1.0192 -0.8383 37 1 9.9425 -0.7893 -2.5240 38 1 9.9774 0.2699 -3.9539 39 1 10.0908 0.9730 -2.3224 40 1 7.0105 -2.5162 -2.6366 41 1 7.7289 -2.7686 -4.2455 42 1 8.7544 -2.2586 -2.8829 43 1 6.8904 -2.1626 -5.9834 44 1 5.4686 -2.1663 -4.9125 45 1 2.6634 -3.2111 -10.1206 46 1 4.0292 -2.0794 -0.0071 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268049222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:17 Heat of formation + Delta-G solvation = -13.819648 kcal Electronic energy + Delta-G solvation = -26739.594124 eV Core-core repulsion = 22982.556606 eV Total energy + Delta-G solvation = -3757.037517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.12806 -40.95435 -38.15433 -36.55587 -35.21224 -34.68398 -33.97517 -32.91235 -30.31101 -29.80386 -27.86326 -27.73259 -26.81688 -25.70331 -24.67010 -22.77034 -22.61559 -20.34389 -19.57881 -18.81533 -18.28495 -17.65375 -17.16158 -16.94075 -16.77999 -16.59179 -16.43029 -16.06818 -15.61103 -15.47608 -15.12968 -14.94238 -14.45830 -14.22668 -14.16417 -13.71081 -13.67135 -13.53610 -13.41436 -13.33917 -13.22852 -13.08962 -13.00413 -12.91321 -12.83210 -12.59786 -12.57622 -12.43811 -12.11484 -11.88734 -11.73157 -11.18239 -10.82374 -10.52712 -10.10468 -10.07558 -9.57332 -9.35969 -9.00118 -8.52732 -6.23044 -0.24572 0.12033 0.98622 1.28987 1.45040 1.54404 1.65648 2.17369 2.24213 2.57017 2.70026 2.85473 3.03159 3.21355 3.33519 3.49674 3.66799 3.75175 3.93875 4.07823 4.13511 4.17037 4.23815 4.32661 4.37183 4.45194 4.47553 4.61424 4.63134 4.70695 4.72958 4.74804 4.79268 4.82637 4.84378 5.01505 5.08981 5.12769 5.31738 5.43680 5.68545 5.70119 6.00278 6.09803 6.16834 6.31620 6.37959 6.79327 6.92652 7.22561 8.59974 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.007772 B = 0.003732 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3601.682988 B = 7499.904231 C =10123.470015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.066 3.934 3 C 0.043 3.957 4 N -0.454 5.454 5 C 0.062 3.938 6 C 0.124 3.876 7 N -0.691 5.691 8 C 0.060 3.940 9 C 0.133 3.867 10 H 0.068 0.932 11 C -0.151 4.151 12 N -0.584 5.584 13 C 0.074 3.926 14 C 0.537 3.463 15 O -0.570 6.570 16 C -0.102 4.102 17 S -0.179 6.179 18 C -0.528 4.528 19 H 0.060 0.940 20 C 0.048 3.952 21 N -0.917 5.917 22 Si 0.913 3.087 23 H -0.260 1.260 24 H -0.257 1.257 25 H -0.241 1.241 26 C 0.067 3.933 27 N -0.468 5.468 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.194 0.806 32 H 0.116 0.884 33 H 0.054 0.946 34 H 0.333 0.667 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.083 0.917 38 H 0.046 0.954 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.277 0.723 46 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.327 6.076 25.898 27.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.074 4.074 3 C -0.117 4.117 4 N -0.170 5.170 5 C -0.078 4.078 6 C -0.006 4.006 7 N -0.322 5.322 8 C -0.070 4.070 9 C 0.030 3.970 10 H 0.086 0.914 11 C -0.210 4.210 12 N -0.317 5.317 13 C -0.068 4.068 14 C 0.324 3.676 15 O -0.450 6.450 16 C -0.253 4.253 17 S 0.047 5.953 18 C -0.675 4.675 19 H 0.079 0.921 20 C -0.157 4.157 21 N -0.555 5.555 22 Si 0.735 3.265 23 H -0.185 1.185 24 H -0.182 1.182 25 H -0.165 1.165 26 C -0.093 4.093 27 N -0.184 5.184 28 H 0.103 0.897 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.211 0.789 32 H 0.134 0.866 33 H 0.072 0.928 34 H 0.150 0.850 35 H 0.120 0.880 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.084 0.916 42 H 0.121 0.879 43 H 0.125 0.875 44 H 0.120 0.880 45 H 0.087 0.913 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 6.906 6.985 25.273 27.114 hybrid contribution -0.212 -0.329 -0.310 0.499 sum 6.694 6.656 24.962 26.688 Atomic orbital electron populations 1.20792 0.85646 1.05142 1.04113 1.22869 1.00082 0.89481 0.94957 1.24044 0.90358 1.00361 0.96931 1.68238 1.09733 1.30211 1.08783 1.22416 0.98773 0.89546 0.97049 1.20740 0.85957 1.03647 0.90211 1.60446 1.08963 1.46813 1.15994 1.22363 0.86515 1.03204 0.94896 1.21224 0.94172 0.90964 0.90650 0.91361 1.22048 0.92209 1.04282 1.02429 1.47558 1.47382 1.08524 1.28229 1.21984 1.03413 0.79504 1.01938 1.19828 0.78304 0.88643 0.80856 1.90645 1.61919 1.21769 1.70626 1.23245 1.02215 1.00751 0.99076 1.84676 1.61885 1.13552 1.35157 1.22449 1.35284 0.92463 1.17349 0.92148 1.25529 0.94299 1.00513 0.95408 1.70014 1.33879 1.29582 1.21986 0.85884 0.79307 0.80539 0.80744 1.18504 1.18158 1.16466 1.23914 0.90293 1.00219 0.94867 1.68351 1.09593 1.30424 1.10048 0.89737 0.90231 0.87478 0.78913 0.86610 0.92766 0.84985 0.88025 0.92386 0.89863 0.93477 0.89529 0.91438 0.91618 0.87946 0.87468 0.88030 0.91345 0.79648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.43 10.19 71.24 0.73 -0.70 16 2 C 0.07 1.43 6.79 42.55 0.29 1.72 16 3 C 0.04 0.90 10.88 84.69 0.92 1.82 16 4 N -0.45 -10.89 10.42 -183.30 -1.91 -12.80 16 5 C 0.06 1.35 6.30 42.53 0.27 1.62 16 6 C 0.12 1.98 6.01 85.56 0.51 2.49 16 7 N -0.69 -13.75 6.21 -517.91 -3.22 -16.97 16 8 C 0.06 0.85 4.98 86.30 0.43 1.28 16 9 C 0.13 2.65 2.88 44.99 0.13 2.78 16 10 H 0.07 1.83 6.90 -2.39 -0.02 1.82 16 11 C -0.15 -2.07 9.17 71.98 0.66 -1.41 16 12 N -0.58 -14.51 2.48 -822.59 -2.04 -16.55 16 13 C 0.07 1.29 9.40 127.77 1.20 2.49 16 14 C 0.54 19.61 7.69 87.66 0.67 20.29 16 15 O -0.57 -25.39 15.19 -3.04 -0.05 -25.43 16 16 C -0.10 -4.13 4.71 71.24 0.34 -3.80 16 17 S -0.18 -9.48 18.55 -56.49 -1.05 -10.53 16 18 C -0.53 -31.70 10.04 67.95 0.68 -31.02 16 19 H 0.06 3.82 8.03 -2.91 -0.02 3.80 16 20 C 0.05 2.88 5.50 84.86 0.47 3.34 16 21 N -0.92 -56.80 13.97 21.65 0.30 -56.49 16 22 Si 0.91 46.20 27.74 68.60 1.90 48.10 16 23 H -0.26 -12.78 7.11 99.48 0.71 -12.08 16 24 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 25 H -0.24 -12.29 6.74 99.48 0.67 -11.62 16 26 C 0.07 1.49 10.86 84.67 0.92 2.41 16 27 N -0.47 -11.81 10.42 -183.30 -1.91 -13.72 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.11 0.89 8.09 -2.39 -0.02 0.87 16 31 H 0.19 2.69 8.06 -2.91 -0.02 2.66 16 32 H 0.12 1.23 8.05 -2.39 -0.02 1.21 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.33 8.66 8.72 -89.69 -0.78 7.88 16 35 H 0.10 1.00 7.84 -2.39 -0.02 0.98 16 36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 0.78 6.66 -2.39 -0.02 0.76 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.07 1.27 6.44 -2.39 -0.02 1.25 16 42 H 0.10 1.08 6.43 -2.39 -0.02 1.07 16 43 H 0.11 4.02 7.40 -2.40 -0.02 4.00 16 44 H 0.10 3.97 8.11 -2.40 -0.02 3.95 16 45 H 0.28 15.84 8.31 -92.71 -0.77 15.07 16 46 H 0.19 3.15 8.06 -2.91 -0.02 3.12 16 Total: -1.00 -81.59 395.44 0.41 -81.17 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.17 Total: 19.89 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: 8.22 Total: 3.32 kcal Atomic # 7 Polarization: -107.75 SS G_CDS: -8.78 Total: -116.53 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.90 Total: 48.10 kcal Atomic # 16 Polarization: -9.48 SS G_CDS: -1.05 Total: -10.53 kcal Total: -81.59 0.41 -81.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268049222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.352 kcal (2) G-P(sol) polarization free energy of solvation -81.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds