Wall clock time and date at job start Tue Mar 31 2020 21:07:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38601 * 120.79980 * 2 1 4 4 N 1.32333 * 119.10185 * 179.97438 * 3 2 1 5 5 C 1.31794 * 120.82239 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.12576 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47017 * 90.00194 * 6 5 4 8 8 C 1.46896 * 110.99984 * 66.05099 * 7 6 5 9 9 C 1.46902 * 110.99643 * 190.00156 * 7 6 5 10 10 C 1.52999 * 109.47419 * 74.97875 * 9 7 6 11 11 H 1.09003 * 109.46725 * 295.17933 * 10 9 7 12 12 C 1.52998 * 109.47198 * 175.17665 * 10 9 7 13 13 N 1.46503 * 109.46877 * 55.17473 * 10 9 7 14 14 C 1.34776 * 120.00078 * 202.99455 * 13 10 9 15 15 O 1.21287 * 119.99647 * 0.02562 * 14 13 10 16 16 C 1.50688 * 120.00171 * 180.28185 * 14 13 10 17 17 S 1.80995 * 109.47333 * 179.72501 * 16 14 13 18 18 C 1.76206 * 100.00309 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99512 * 0.02562 * 18 17 16 20 20 C 1.38792 * 120.00093 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00121 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 120.00277 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47161 * 89.99759 * 22 20 18 24 24 H 1.48499 * 109.47178 * 209.99862 * 22 20 18 25 25 H 1.48499 * 109.46635 * 329.99660 * 22 20 18 26 26 N 1.31798 * 121.75324 * 0.28114 * 5 4 3 27 27 C 1.32337 * 120.81350 * 359.43633 * 26 5 4 28 28 H 1.09000 * 109.47563 * 89.99482 * 1 2 3 29 29 H 1.09000 * 109.47049 * 209.99933 * 1 2 3 30 30 H 1.09001 * 109.47001 * 329.99639 * 1 2 3 31 31 H 1.07993 * 120.44941 * 359.96093 * 3 2 1 32 32 H 1.09003 * 109.47061 * 329.99805 * 6 5 4 33 33 H 1.09007 * 109.47059 * 210.00619 * 6 5 4 34 34 H 1.08993 * 109.47385 * 178.20723 * 8 7 6 35 35 H 1.09008 * 109.46780 * 298.20542 * 8 7 6 36 36 H 1.08996 * 109.47813 * 58.20293 * 8 7 6 37 37 H 1.09005 * 109.47109 * 314.97268 * 9 7 6 38 38 H 1.08998 * 109.47030 * 194.98294 * 9 7 6 39 39 H 1.09000 * 109.46677 * 180.02562 * 12 10 9 40 40 H 1.08997 * 109.47152 * 300.00417 * 12 10 9 41 41 H 1.09004 * 109.46967 * 60.00003 * 12 10 9 42 42 H 0.97001 * 119.99698 * 23.00177 * 13 10 9 43 43 H 1.09006 * 109.46997 * 299.71971 * 16 14 13 44 44 H 1.08999 * 109.47320 * 59.72240 * 16 14 13 45 45 H 0.97005 * 120.00109 * 179.97438 * 21 20 18 46 46 H 1.08008 * 120.44445 * 180.29845 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5394 1.1513 0.0005 5 6 4.1809 0.0000 0.0015 6 6 5.6879 0.0000 0.0015 7 7 6.1775 0.0012 1.3865 8 6 5.8281 -1.2516 2.0694 9 6 7.6264 0.2394 1.4323 10 6 7.9094 1.7171 1.1547 11 1 7.6065 1.9598 0.1361 12 6 9.4057 1.9897 1.3206 13 7 7.1545 2.5446 2.0989 14 6 6.8631 3.8239 1.7904 15 8 7.2255 4.2897 0.7308 16 6 6.0922 4.6770 2.7643 17 16 5.8686 6.3334 2.0699 18 6 4.9642 7.0938 3.3771 19 1 4.7201 6.5289 4.2646 20 6 4.5666 8.4189 3.2666 21 7 3.8914 8.9871 4.2434 22 14 4.9895 9.3963 1.7318 23 1 3.9007 9.2455 0.7333 24 1 5.1423 10.8306 2.0848 25 1 6.2617 8.8896 1.1574 26 7 3.5394 -1.1513 -0.0034 27 6 2.2167 -1.1904 0.0015 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6972 2.1373 -0.0006 32 1 6.0512 0.8895 -0.5132 33 1 6.0512 -0.8905 -0.5117 34 1 6.2299 -1.2374 3.0825 35 1 4.7435 -1.3529 2.1101 36 1 6.2514 -2.0940 1.5225 37 1 8.1194 -0.3732 0.6774 38 1 8.0069 -0.0243 2.4191 39 1 9.6072 3.0426 1.1232 40 1 9.7085 1.7469 2.3391 41 1 9.9673 1.3740 0.6181 42 1 6.8644 2.1719 2.9462 43 1 5.1171 4.2261 2.9496 44 1 6.6439 4.7474 3.7017 45 1 3.6138 9.9134 4.1663 46 1 1.6971 -2.1374 0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268722336.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:51 Heat of formation + Delta-G solvation = 14.571129 kcal Electronic energy + Delta-G solvation = -26850.501743 eV Core-core repulsion = 23094.695342 eV Total energy + Delta-G solvation = -3755.806401 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.31688 -39.43391 -37.82636 -35.03993 -33.91081 -33.82812 -32.36678 -31.37725 -29.49186 -28.49314 -27.38952 -26.16200 -25.53301 -24.82695 -23.21883 -21.99331 -21.07216 -20.07578 -17.94097 -17.77629 -17.20048 -16.43324 -16.31557 -15.69905 -15.24278 -14.97067 -14.89413 -14.68206 -14.58866 -14.43744 -13.90761 -13.77158 -13.34739 -13.21980 -13.04477 -12.93473 -12.78488 -12.74262 -12.70786 -12.29228 -12.21027 -12.01422 -11.88349 -11.55946 -11.18618 -11.01687 -10.95756 -10.94221 -10.81161 -10.48926 -9.78568 -9.45858 -9.33219 -9.28512 -8.93475 -8.70785 -8.62532 -8.38511 -6.80549 -6.22107 -3.91754 0.63379 0.92433 2.90926 3.20979 3.27635 3.38084 3.46594 3.56714 3.68597 3.82201 3.93992 3.98364 4.38149 4.39955 4.52847 4.57798 4.61743 4.81081 4.88398 4.98166 5.06328 5.16208 5.17133 5.20238 5.20962 5.29215 5.32898 5.38728 5.44868 5.48767 5.52147 5.60846 5.69560 5.70333 5.75027 5.94105 6.04224 6.17596 6.19793 6.21752 6.61614 6.70690 6.81460 6.88101 7.91385 7.95469 8.01369 8.49109 8.76262 9.24712 10.87310 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009412 B = 0.003391 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.075498 B = 8254.421575 C =10495.750241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.196 4.196 3 C 0.152 3.848 4 N -0.487 5.487 5 C 0.319 3.681 6 C 0.123 3.877 7 N -0.530 5.530 8 C 0.028 3.972 9 C 0.049 3.951 10 C 0.150 3.850 11 H 0.084 0.916 12 C -0.163 4.163 13 N -0.714 5.714 14 C 0.536 3.464 15 O -0.526 6.526 16 C -0.120 4.120 17 S -0.142 6.142 18 C -0.518 4.518 19 H 0.087 0.913 20 C 0.095 3.905 21 N -0.883 5.883 22 Si 0.856 3.144 23 H -0.268 1.268 24 H -0.275 1.275 25 H -0.235 1.235 26 N -0.515 5.515 27 C 0.142 3.858 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.170 0.830 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.030 0.970 37 H 0.053 0.947 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.061 0.939 42 H 0.399 0.601 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.269 0.731 46 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.085 -25.840 -6.952 26.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.200 4.200 3 C -0.015 4.015 4 N -0.199 5.199 5 C 0.052 3.948 6 C -0.006 4.006 7 N -0.255 5.255 8 C -0.121 4.121 9 C -0.080 4.080 10 C 0.044 3.956 11 H 0.102 0.898 12 C -0.222 4.222 13 N -0.367 5.367 14 C 0.322 3.678 15 O -0.402 6.402 16 C -0.271 4.271 17 S 0.084 5.916 18 C -0.666 4.666 19 H 0.105 0.895 20 C -0.113 4.113 21 N -0.520 5.520 22 Si 0.681 3.319 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.159 1.159 26 N -0.229 5.229 27 C -0.025 4.025 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.187 0.813 32 H 0.121 0.879 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.233 0.767 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.079 0.921 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 1.399 -24.526 -8.407 25.964 hybrid contribution -1.321 -0.809 0.821 1.753 sum 0.078 -25.334 -7.586 26.446 Atomic orbital electron populations 1.20656 0.89153 1.03628 1.02854 1.21753 0.99192 0.95728 1.03330 1.23326 0.89569 0.98425 0.90157 1.68330 1.09774 1.30171 1.11639 1.22861 0.97229 0.83458 0.91294 1.20797 0.86356 1.02934 0.90535 1.61796 1.13829 1.35283 1.14544 1.22413 1.01999 0.89229 0.98409 1.22491 0.87086 0.95954 1.02430 1.20826 0.91179 0.88563 0.95052 0.89756 1.22168 0.95160 1.03202 1.01705 1.45719 1.57782 1.11546 1.21664 1.20122 0.78823 0.81561 0.87335 1.90672 1.52594 1.72236 1.24674 1.23238 1.02625 1.00075 1.01182 1.84732 1.73739 1.04034 1.29087 1.22351 1.39737 1.00175 1.04342 0.89526 1.24704 0.93535 0.96571 0.96501 1.69948 1.36664 1.13470 1.31947 0.86735 0.81725 0.79956 0.83445 1.19271 1.20078 1.15886 1.68228 1.09995 1.30687 1.13977 1.23076 0.89532 0.98096 0.91758 0.90639 0.91043 0.90653 0.81322 0.87928 0.92129 0.91379 0.91425 0.95171 0.92893 0.89779 0.91308 0.92489 0.92049 0.76684 0.88730 0.88909 0.92064 0.81826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.59 10.06 36.00 0.36 -0.23 16 2 C -0.20 -1.74 5.91 -104.36 -0.62 -2.36 16 3 C 0.15 1.74 11.01 -17.20 -0.19 1.55 16 4 N -0.49 -6.88 10.33 -10.72 -0.11 -6.99 16 5 C 0.32 4.02 6.41 -157.19 -1.01 3.01 16 6 C 0.12 1.36 5.23 -4.98 -0.03 1.34 16 7 N -0.53 -5.39 4.42 -244.37 -1.08 -6.47 16 8 C 0.03 0.24 9.22 60.06 0.55 0.80 16 9 C 0.05 0.42 4.54 -3.82 -0.02 0.40 16 10 C 0.15 1.71 2.55 -67.93 -0.17 1.54 16 11 H 0.08 1.15 6.41 -51.93 -0.33 0.82 16 12 C -0.16 -1.71 9.46 37.16 0.35 -1.35 16 13 N -0.71 -9.79 4.83 -53.81 -0.26 -10.05 16 14 C 0.54 10.01 7.79 -10.99 -0.09 9.93 16 15 O -0.53 -11.69 15.55 5.55 0.09 -11.60 16 16 C -0.12 -2.48 6.16 36.00 0.22 -2.25 16 17 S -0.14 -3.73 18.55 -107.50 -1.99 -5.72 16 18 C -0.52 -15.31 10.04 30.94 0.31 -15.00 16 19 H 0.09 2.67 8.03 -52.49 -0.42 2.25 16 20 C 0.10 2.83 5.50 -17.43 -0.10 2.74 16 21 N -0.88 -27.10 13.97 55.49 0.78 -26.32 16 22 Si 0.86 22.24 27.74 -169.99 -4.72 17.52 16 23 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.23 -6.10 6.74 56.52 0.38 -5.72 16 26 N -0.52 -5.78 9.32 -10.72 -0.10 -5.88 16 27 C 0.14 1.28 11.01 -17.20 -0.19 1.09 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.31 8.10 -51.93 -0.42 -0.11 16 30 H 0.07 0.42 8.10 -51.93 -0.42 -0.01 16 31 H 0.17 1.65 8.06 -52.49 -0.42 1.23 16 32 H 0.10 1.26 6.66 -51.93 -0.35 0.91 16 33 H 0.06 0.59 8.11 -51.93 -0.42 0.16 16 34 H 0.07 0.52 7.94 -51.93 -0.41 0.11 16 35 H 0.07 0.71 6.67 -51.92 -0.35 0.36 16 36 H 0.03 0.24 8.13 -51.93 -0.42 -0.18 16 37 H 0.05 0.38 8.01 -51.93 -0.42 -0.03 16 38 H 0.08 0.61 7.81 -51.93 -0.41 0.20 16 39 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.40 4.75 8.58 -40.82 -0.35 4.40 16 43 H 0.09 1.89 8.14 -51.91 -0.42 1.46 16 44 H 0.09 1.78 8.14 -51.92 -0.42 1.36 16 45 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 46 H 0.16 0.94 8.06 -52.48 -0.42 0.51 16 LS Contribution 396.37 15.07 5.97 5.97 Total: -1.00 -36.29 396.37 -9.28 -45.57 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.25 Total: 2.78 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -0.60 Total: 1.19 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -0.77 Total: -55.71 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.72 Total: 17.52 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -1.99 Total: -5.72 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.29 -9.28 -45.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268722336.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.140 kcal (2) G-P(sol) polarization free energy of solvation -36.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.569 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds