Wall clock time and date at job start Tue Mar 31 2020 21:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38601 * 120.79980 * 2 1 4 4 N 1.32333 * 119.10185 * 179.97438 * 3 2 1 5 5 C 1.31794 * 120.82239 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.12576 * 179.97438 * 5 4 3 7 7 N 1.46900 * 109.47017 * 90.00194 * 6 5 4 8 8 C 1.46896 * 110.99984 * 66.05099 * 7 6 5 9 9 C 1.46902 * 110.99643 * 190.00156 * 7 6 5 10 10 C 1.52999 * 109.47419 * 74.97875 * 9 7 6 11 11 H 1.09003 * 109.46725 * 295.17933 * 10 9 7 12 12 C 1.52998 * 109.47198 * 175.17665 * 10 9 7 13 13 N 1.46503 * 109.46877 * 55.17473 * 10 9 7 14 14 C 1.34776 * 120.00078 * 202.99455 * 13 10 9 15 15 O 1.21287 * 119.99647 * 0.02562 * 14 13 10 16 16 C 1.50688 * 120.00171 * 180.28185 * 14 13 10 17 17 S 1.80995 * 109.47333 * 179.72501 * 16 14 13 18 18 C 1.76206 * 100.00309 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99512 * 0.02562 * 18 17 16 20 20 C 1.38792 * 120.00093 * 179.97438 * 18 17 16 21 21 N 1.31633 * 120.00121 * 180.02562 * 20 18 17 22 22 Si 1.86807 * 120.00277 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47161 * 89.99759 * 22 20 18 24 24 H 1.48499 * 109.47178 * 209.99862 * 22 20 18 25 25 H 1.48499 * 109.46635 * 329.99660 * 22 20 18 26 26 N 1.31798 * 121.75324 * 0.28114 * 5 4 3 27 27 C 1.32337 * 120.81350 * 359.43633 * 26 5 4 28 28 H 1.09000 * 109.47563 * 89.99482 * 1 2 3 29 29 H 1.09000 * 109.47049 * 209.99933 * 1 2 3 30 30 H 1.09001 * 109.47001 * 329.99639 * 1 2 3 31 31 H 1.07993 * 120.44941 * 359.96093 * 3 2 1 32 32 H 1.09003 * 109.47061 * 329.99805 * 6 5 4 33 33 H 1.09007 * 109.47059 * 210.00619 * 6 5 4 34 34 H 1.08993 * 109.47385 * 178.20723 * 8 7 6 35 35 H 1.09008 * 109.46780 * 298.20542 * 8 7 6 36 36 H 1.08996 * 109.47813 * 58.20293 * 8 7 6 37 37 H 1.09005 * 109.47109 * 314.97268 * 9 7 6 38 38 H 1.08998 * 109.47030 * 194.98294 * 9 7 6 39 39 H 1.09000 * 109.46677 * 180.02562 * 12 10 9 40 40 H 1.08997 * 109.47152 * 300.00417 * 12 10 9 41 41 H 1.09004 * 109.46967 * 60.00003 * 12 10 9 42 42 H 0.97001 * 119.99698 * 23.00177 * 13 10 9 43 43 H 1.09006 * 109.46997 * 299.71971 * 16 14 13 44 44 H 1.08999 * 109.47320 * 59.72240 * 16 14 13 45 45 H 0.97005 * 120.00109 * 179.97438 * 21 20 18 46 46 H 1.08008 * 120.44445 * 180.29845 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2167 1.1905 0.0000 4 7 3.5394 1.1513 0.0005 5 6 4.1809 0.0000 0.0015 6 6 5.6879 0.0000 0.0015 7 7 6.1775 0.0012 1.3865 8 6 5.8281 -1.2516 2.0694 9 6 7.6264 0.2394 1.4323 10 6 7.9094 1.7171 1.1547 11 1 7.6065 1.9598 0.1361 12 6 9.4057 1.9897 1.3206 13 7 7.1545 2.5446 2.0989 14 6 6.8631 3.8239 1.7904 15 8 7.2255 4.2897 0.7308 16 6 6.0922 4.6770 2.7643 17 16 5.8686 6.3334 2.0699 18 6 4.9642 7.0938 3.3771 19 1 4.7201 6.5289 4.2646 20 6 4.5666 8.4189 3.2666 21 7 3.8914 8.9871 4.2434 22 14 4.9895 9.3963 1.7318 23 1 3.9007 9.2455 0.7333 24 1 5.1423 10.8306 2.0848 25 1 6.2617 8.8896 1.1574 26 7 3.5394 -1.1513 -0.0034 27 6 2.2167 -1.1904 0.0015 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6972 2.1373 -0.0006 32 1 6.0512 0.8895 -0.5132 33 1 6.0512 -0.8905 -0.5117 34 1 6.2299 -1.2374 3.0825 35 1 4.7435 -1.3529 2.1101 36 1 6.2514 -2.0940 1.5225 37 1 8.1194 -0.3732 0.6774 38 1 8.0069 -0.0243 2.4191 39 1 9.6072 3.0426 1.1232 40 1 9.7085 1.7469 2.3391 41 1 9.9673 1.3740 0.6181 42 1 6.8644 2.1719 2.9462 43 1 5.1171 4.2261 2.9496 44 1 6.6439 4.7474 3.7017 45 1 3.6138 9.9134 4.1663 46 1 1.6971 -2.1374 0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268722336.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:07:50 Heat of formation + Delta-G solvation = -12.215556 kcal Electronic energy + Delta-G solvation = -26851.663301 eV Core-core repulsion = 23094.695342 eV Total energy + Delta-G solvation = -3756.967959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.11428 -40.73515 -38.79721 -36.10884 -34.72251 -34.66873 -34.61863 -32.64575 -30.26251 -29.92425 -28.11839 -27.83684 -26.84090 -25.61845 -24.01094 -22.87948 -22.09838 -21.30592 -19.86543 -18.75075 -18.09550 -17.73907 -17.45814 -17.08454 -16.68578 -16.31854 -15.97498 -15.86626 -15.54697 -15.32341 -15.21851 -14.94009 -14.61754 -14.52770 -14.18701 -13.94932 -13.70162 -13.68426 -13.34197 -13.31776 -13.20011 -13.12018 -12.99326 -12.88377 -12.74971 -12.59105 -12.48938 -11.85592 -11.82693 -11.79748 -11.65721 -11.16256 -10.85748 -10.51267 -10.17397 -10.17032 -9.95830 -9.36086 -8.96715 -8.50789 -6.20603 -0.14675 0.13084 1.01491 1.31477 1.48078 1.58378 1.72058 2.25605 2.35118 2.53373 2.76308 2.87357 2.90374 3.14030 3.22302 3.67738 3.81192 3.91012 3.93359 3.97944 4.10173 4.17767 4.24982 4.31740 4.38588 4.47925 4.48653 4.61815 4.63340 4.67174 4.77006 4.78189 4.80220 4.82900 5.03455 5.06135 5.09800 5.15046 5.32988 5.48421 5.62705 5.71626 5.92145 5.98921 6.05771 6.11600 6.63831 6.94527 7.13057 7.36034 8.61948 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009412 B = 0.003391 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2974.075498 B = 8254.421575 C =10495.750241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.184 4.184 3 C 0.125 3.875 4 N -0.530 5.530 5 C 0.303 3.697 6 C 0.127 3.873 7 N -0.545 5.545 8 C 0.035 3.965 9 C 0.057 3.943 10 C 0.147 3.853 11 H 0.059 0.941 12 C -0.157 4.157 13 N -0.691 5.691 14 C 0.538 3.462 15 O -0.566 6.566 16 C -0.108 4.108 17 S -0.172 6.172 18 C -0.529 4.529 19 H 0.059 0.941 20 C 0.047 3.953 21 N -0.918 5.918 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.257 1.257 25 H -0.238 1.238 26 N -0.521 5.521 27 C 0.138 3.862 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.173 0.827 32 H 0.082 0.918 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.048 0.952 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.034 0.966 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.411 0.589 43 H 0.100 0.900 44 H 0.109 0.891 45 H 0.277 0.723 46 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 -28.385 -7.187 29.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.188 4.188 3 C -0.041 4.041 4 N -0.244 5.244 5 C 0.035 3.965 6 C -0.002 4.002 7 N -0.270 5.270 8 C -0.113 4.113 9 C -0.070 4.070 10 C 0.042 3.958 11 H 0.078 0.922 12 C -0.215 4.215 13 N -0.343 5.343 14 C 0.324 3.676 15 O -0.445 6.445 16 C -0.259 4.259 17 S 0.055 5.945 18 C -0.677 4.677 19 H 0.077 0.923 20 C -0.158 4.158 21 N -0.556 5.556 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.181 1.181 25 H -0.161 1.161 26 N -0.235 5.235 27 C -0.028 4.028 28 H 0.106 0.894 29 H 0.110 0.890 30 H 0.094 0.906 31 H 0.190 0.810 32 H 0.100 0.900 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.126 0.874 39 H 0.054 0.946 40 H 0.093 0.907 41 H 0.105 0.895 42 H 0.247 0.753 43 H 0.118 0.882 44 H 0.127 0.873 45 H 0.086 0.914 46 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 1.672 -27.113 -8.610 28.496 hybrid contribution -1.468 -0.192 0.951 1.759 sum 0.204 -27.305 -7.659 28.360 Atomic orbital electron populations 1.20737 0.86624 1.04662 1.03923 1.22048 1.00822 0.94673 1.01243 1.23582 0.89298 0.99890 0.91283 1.68265 1.11275 1.31516 1.13324 1.23052 0.97853 0.83549 0.92076 1.20717 0.85884 1.02433 0.91148 1.61745 1.14782 1.36393 1.14116 1.22348 1.00932 0.88863 0.99150 1.22466 0.86517 0.93563 1.04476 1.21029 0.91540 0.90079 0.93117 0.92248 1.22097 0.94319 1.01550 1.03557 1.45561 1.56455 1.09869 1.22385 1.19773 0.78688 0.82882 0.86292 1.90660 1.54495 1.73338 1.26054 1.23220 1.03723 0.96875 1.02041 1.84641 1.73141 1.08022 1.28697 1.22474 1.40221 1.00560 1.04409 0.92301 1.25542 0.93356 0.97541 0.99356 1.70021 1.37577 1.14286 1.33724 0.85873 0.81377 0.79296 0.79860 1.18706 1.18131 1.16150 1.68268 1.11116 1.29945 1.14127 1.23743 0.89027 0.99591 0.90479 0.89365 0.88998 0.90624 0.81001 0.90002 0.90857 0.89866 0.93283 0.94108 0.90671 0.87400 0.94628 0.90681 0.89523 0.75259 0.88176 0.87323 0.91362 0.78242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.06 71.23 0.72 -0.22 16 2 C -0.18 -3.06 5.91 -19.69 -0.12 -3.18 16 3 C 0.12 2.92 11.01 84.70 0.93 3.85 16 4 N -0.53 -15.50 10.33 -187.84 -1.94 -17.44 16 5 C 0.30 7.63 6.41 138.75 0.89 8.52 16 6 C 0.13 2.78 5.23 85.56 0.45 3.23 16 7 N -0.55 -10.22 4.42 -927.04 -4.09 -14.31 16 8 C 0.03 0.54 9.22 127.69 1.18 1.71 16 9 C 0.06 0.82 4.54 86.30 0.39 1.22 16 10 C 0.15 3.19 2.55 44.99 0.11 3.30 16 11 H 0.06 1.64 6.41 -2.39 -0.02 1.62 16 12 C -0.16 -2.97 9.46 71.98 0.68 -2.29 16 13 N -0.69 -18.29 4.83 -442.53 -2.14 -20.43 16 14 C 0.54 20.19 7.79 87.65 0.68 20.87 16 15 O -0.57 -25.68 15.55 -3.05 -0.05 -25.72 16 16 C -0.11 -4.44 6.16 71.23 0.44 -4.00 16 17 S -0.17 -9.11 18.55 -56.49 -1.05 -10.16 16 18 C -0.53 -31.94 10.04 67.95 0.68 -31.26 16 19 H 0.06 3.76 8.03 -2.91 -0.02 3.73 16 20 C 0.05 2.85 5.50 84.86 0.47 3.31 16 21 N -0.92 -57.02 13.97 21.65 0.30 -56.71 16 22 Si 0.91 46.21 27.74 68.60 1.90 48.11 16 23 H -0.26 -12.94 7.11 99.48 0.71 -12.23 16 24 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 25 H -0.24 -12.04 6.74 99.48 0.67 -11.37 16 26 N -0.52 -11.18 9.32 -187.84 -1.75 -12.93 16 27 C 0.14 2.24 11.01 84.70 0.93 3.17 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.09 0.50 8.10 -2.39 -0.02 0.48 16 30 H 0.07 0.72 8.10 -2.39 -0.02 0.70 16 31 H 0.17 3.58 8.06 -2.91 -0.02 3.56 16 32 H 0.08 2.09 6.66 -2.39 -0.02 2.07 16 33 H 0.07 1.34 8.11 -2.38 -0.02 1.32 16 34 H 0.08 1.02 7.94 -2.39 -0.02 1.00 16 35 H 0.05 0.95 6.67 -2.38 -0.02 0.94 16 36 H 0.04 0.54 8.13 -2.39 -0.02 0.52 16 37 H 0.08 0.82 8.01 -2.38 -0.02 0.80 16 38 H 0.11 1.10 7.81 -2.39 -0.02 1.08 16 39 H 0.03 0.92 8.13 -2.39 -0.02 0.90 16 40 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.41 9.03 8.58 -92.71 -0.80 8.24 16 43 H 0.10 4.02 8.14 -2.39 -0.02 4.00 16 44 H 0.11 4.13 8.14 -2.40 -0.02 4.11 16 45 H 0.28 15.86 8.31 -92.70 -0.77 15.09 16 46 H 0.20 1.63 8.06 -2.91 -0.02 1.60 16 Total: -1.00 -81.39 396.37 -0.22 -81.61 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.15 Total: 19.74 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 8.44 Total: 8.24 kcal Atomic # 7 Polarization: -112.21 SS G_CDS: -9.62 Total: -121.83 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.05 Total: -25.72 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.90 Total: 48.11 kcal Atomic # 16 Polarization: -9.11 SS G_CDS: -1.05 Total: -10.16 kcal Total: -81.39 -0.22 -81.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268722336.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.398 kcal (2) G-P(sol) polarization free energy of solvation -81.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds