Wall clock time and date at job start Tue Mar 31 2020 20:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40085 * 126.03663 * 2 1 4 4 C 1.30833 * 108.20858 * 179.97438 * 3 2 1 5 5 C 1.39877 * 108.20100 * 0.02562 * 4 3 2 6 6 C 1.34945 * 126.03821 * 179.97438 * 2 1 3 7 7 C 1.50698 * 126.12786 * 0.02628 * 6 2 1 8 8 N 1.46899 * 109.46755 * 274.99867 * 7 6 2 9 9 C 1.48541 * 110.99890 * 287.39217 * 8 7 6 10 10 C 1.54938 * 103.22964 * 200.28057 * 9 8 7 11 11 C 1.54602 * 102.91919 * 37.41212 * 10 9 8 12 12 C 1.52996 * 110.39520 * 219.08201 * 11 10 9 13 13 N 1.46508 * 110.30494 * 96.96180 * 11 10 9 14 14 C 1.34768 * 120.00083 * 64.28365 * 13 11 10 15 15 O 1.21277 * 120.00043 * 359.97438 * 14 13 11 16 16 C 1.50707 * 120.00109 * 180.02562 * 14 13 11 17 17 S 1.80993 * 109.47349 * 179.97438 * 16 14 13 18 18 C 1.76197 * 100.00125 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99815 * 359.97438 * 18 17 16 20 20 C 1.38790 * 120.00255 * 179.97438 * 18 17 16 21 21 N 1.31639 * 119.99917 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00287 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46908 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46764 * 120.00165 * 22 20 18 25 25 H 1.48501 * 109.47057 * 240.00133 * 22 20 18 26 26 C 1.47901 * 110.99913 * 170.00221 * 8 7 6 27 27 H 1.09000 * 109.47005 * 90.02056 * 1 2 3 28 28 H 1.09003 * 109.46946 * 210.02365 * 1 2 3 29 29 H 1.09006 * 109.46968 * 330.02231 * 1 2 3 30 30 H 1.07995 * 125.90631 * 179.97438 * 4 3 2 31 31 H 1.07996 * 126.04364 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.47117 * 34.99201 * 7 6 2 33 33 H 1.08997 * 109.47369 * 154.99777 * 7 6 2 34 34 H 1.08993 * 110.66504 * 318.71732 * 9 8 7 35 35 H 1.09002 * 110.66158 * 81.84591 * 9 8 7 36 36 H 1.08998 * 110.72376 * 279.06400 * 10 9 8 37 37 H 1.08993 * 110.87774 * 155.84399 * 10 9 8 38 38 H 1.08997 * 109.47219 * 175.76846 * 12 11 10 39 39 H 1.09004 * 109.47405 * 295.76959 * 12 11 10 40 40 H 1.09003 * 109.46947 * 55.76842 * 12 11 10 41 41 H 0.97000 * 119.99226 * 244.28276 * 13 11 10 42 42 H 1.08995 * 109.46859 * 300.00320 * 16 14 13 43 43 H 1.09002 * 109.46873 * 59.99836 * 16 14 13 44 44 H 0.96995 * 119.99645 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.91512 * 265.18967 * 26 8 7 46 46 H 1.08994 * 109.92464 * 26.48585 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 0.0006 5 6 3.5437 -0.6665 0.0003 6 6 2.2589 -1.0912 0.0005 7 6 1.7974 -2.5258 0.0006 8 7 1.5321 -2.9546 1.3803 9 6 2.7990 -3.1380 2.1337 10 6 2.3826 -4.0570 3.3095 11 6 1.3601 -5.0141 2.6547 12 6 0.2006 -5.2925 3.6132 13 7 2.0122 -6.2682 2.2692 14 6 2.5288 -7.0775 3.2148 15 8 2.4544 -6.7676 4.3850 16 6 3.2001 -8.3672 2.8182 17 16 3.7860 -9.2234 4.3013 18 6 4.5069 -10.6526 3.5648 19 1 4.4875 -10.7753 2.4919 20 6 5.0997 -11.6207 4.3634 21 7 5.1229 -11.4714 5.6710 22 14 5.8634 -13.1362 3.5826 23 1 5.7062 -13.0657 2.1077 24 1 7.3074 -13.1944 3.9239 25 1 5.1840 -14.3530 4.0957 26 6 0.8541 -4.2688 1.4057 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 4.4054 1.3710 0.0003 31 1 4.4211 -1.2963 0.0003 32 1 0.8849 -2.6139 -0.5891 33 1 2.5728 -3.1570 -0.4334 34 1 3.5494 -3.6255 1.5115 35 1 3.1677 -2.1817 2.5048 36 1 1.9138 -3.4774 4.1047 37 1 3.2397 -4.6111 3.6918 38 1 -0.5467 -5.9066 3.1109 39 1 0.5736 -5.8197 4.4913 40 1 -0.2512 -4.3492 3.9205 41 1 2.0720 -6.5158 1.3332 42 1 2.4871 -9.0005 2.2904 43 1 4.0461 -8.1508 2.1659 44 1 5.5369 -12.1481 6.2291 45 1 -0.2250 -4.1288 1.4688 46 1 1.1060 -4.8342 0.5085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001500182531.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:14 Heat of formation + Delta-G solvation = 54.965210 kcal Electronic energy + Delta-G solvation = -26694.281690 eV Core-core repulsion = 22940.226908 eV Total energy + Delta-G solvation = -3754.054782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.53418 -40.34781 -38.28183 -34.94886 -33.50154 -32.45506 -32.30807 -30.66524 -29.83443 -28.53215 -27.05554 -26.78389 -25.51419 -24.74571 -22.06328 -21.32992 -20.97166 -20.08307 -19.37495 -17.90672 -17.21023 -16.51226 -16.29997 -15.94003 -15.59590 -14.99215 -14.91109 -14.83094 -14.74463 -14.26196 -13.94985 -13.90097 -13.50019 -13.24394 -13.20321 -12.98883 -12.85167 -12.65591 -12.54358 -12.46608 -11.96538 -11.89958 -11.77044 -11.43563 -11.10215 -11.08474 -11.04711 -10.89394 -10.88344 -10.77904 -9.83069 -9.59326 -9.28815 -9.10282 -8.97682 -8.88767 -8.74245 -8.26075 -6.52473 -6.24421 -3.94861 1.54578 2.26538 2.55789 2.97169 3.05051 3.19476 3.25620 3.29823 3.57393 3.78045 4.12335 4.17830 4.25397 4.29952 4.52803 4.66319 4.77527 4.84140 4.94031 5.00430 5.01216 5.08835 5.10963 5.13993 5.21047 5.27012 5.39478 5.46928 5.53862 5.61188 5.68151 5.76928 5.80556 5.84726 5.85967 5.95812 6.09955 6.13040 6.32157 6.37962 6.39640 6.50673 6.72272 6.76983 7.45973 7.57274 7.67374 8.32739 8.58989 9.21230 10.82997 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.002060 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.017993 B =13588.000825 C =14087.935788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.362 5.362 3 N -0.300 5.300 4 C 0.045 3.955 5 C -0.269 4.269 6 C 0.099 3.901 7 C 0.105 3.895 8 N -0.511 5.511 9 C 0.037 3.963 10 C -0.124 4.124 11 C 0.170 3.830 12 C -0.158 4.158 13 N -0.732 5.732 14 C 0.535 3.465 15 O -0.510 6.510 16 C -0.154 4.154 17 S -0.059 6.059 18 C -0.535 4.535 19 H 0.072 0.928 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C 0.037 3.963 27 H 0.070 0.930 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.182 0.818 31 H 0.145 0.855 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.395 0.605 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.268 0.732 45 H 0.093 0.907 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.543 20.677 -14.328 26.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.144 5.144 3 N -0.122 5.122 4 C -0.140 4.140 5 C -0.299 4.299 6 C -0.030 4.030 7 C -0.025 4.025 8 N -0.236 5.236 9 C -0.090 4.090 10 C -0.163 4.163 11 C 0.083 3.917 12 C -0.216 4.216 13 N -0.388 5.388 14 C 0.321 3.679 15 O -0.384 6.384 16 C -0.305 4.305 17 S 0.168 5.832 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.091 4.091 27 H 0.089 0.911 28 H 0.112 0.888 29 H 0.106 0.894 30 H 0.199 0.801 31 H 0.162 0.838 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.229 0.771 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.078 0.922 45 H 0.111 0.889 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.904 22.542 -11.972 27.756 hybrid contribution 1.697 -2.752 -2.798 4.276 sum -9.208 19.791 -14.770 26.355 Atomic orbital electron populations 1.21867 0.74372 1.04950 1.02965 1.48424 1.06544 1.03215 1.56223 1.77365 1.01921 1.08015 1.24866 1.23802 0.95216 0.95036 0.99927 1.21266 0.96223 0.95154 1.17293 1.20769 0.91085 0.89849 1.01292 1.20808 1.01264 0.89256 0.91153 1.64828 1.20806 1.26482 1.11461 1.23320 0.90413 1.00165 0.95107 1.22881 0.99786 0.96397 0.97207 1.20996 0.92972 0.83803 0.93924 1.22196 0.96375 1.02196 1.00865 1.46269 1.60970 1.21673 1.09840 1.20242 0.77491 0.84513 0.85645 1.90668 1.56037 1.73695 1.17955 1.23550 1.02712 0.96842 1.07414 1.85383 1.73104 1.21335 1.03376 1.22901 1.43192 1.06777 0.95471 0.90937 1.24996 0.95567 0.98292 0.94769 1.70027 1.42079 1.34719 1.03417 0.86120 0.78817 0.81392 0.79187 1.19645 1.20552 1.20556 1.23187 1.00298 0.88857 0.96752 0.91100 0.88842 0.89408 0.80105 0.83761 0.89553 0.91492 0.93229 0.89713 0.89995 0.89469 0.92741 0.89502 0.91775 0.77086 0.89367 0.89417 0.92224 0.88877 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 11.16 59.85 0.67 1.27 16 2 N -0.36 -3.46 4.01 -63.88 -0.26 -3.71 16 3 N -0.30 -3.38 12.57 30.62 0.39 -2.99 16 4 C 0.05 0.43 12.03 -17.36 -0.21 0.22 16 5 C -0.27 -2.47 10.63 -40.01 -0.43 -2.89 16 6 C 0.10 0.89 6.06 -82.27 -0.50 0.39 16 7 C 0.10 0.74 4.65 -4.98 -0.02 0.72 16 8 N -0.51 -4.21 5.23 -231.89 -1.21 -5.43 16 9 C 0.04 0.36 6.05 -1.89 -0.01 0.35 16 10 C -0.12 -1.45 5.85 -24.87 -0.15 -1.60 16 11 C 0.17 1.84 0.94 -130.46 -0.12 1.71 16 12 C -0.16 -1.85 8.15 37.16 0.30 -1.55 16 13 N -0.73 -8.89 5.15 -46.35 -0.24 -9.13 16 14 C 0.53 9.22 7.04 -10.99 -0.08 9.14 16 15 O -0.51 -10.57 12.75 5.56 0.07 -10.50 16 16 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 17 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 18 C -0.54 -15.01 9.50 30.94 0.29 -14.71 16 19 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 20 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 21 N -0.87 -25.87 13.22 55.49 0.73 -25.14 16 22 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 C 0.04 0.29 6.12 -2.75 -0.02 0.27 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.48 7.78 -51.93 -0.40 0.07 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.18 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 32 H 0.09 0.48 7.92 -51.93 -0.41 0.07 16 33 H 0.07 0.44 7.83 -51.93 -0.41 0.04 16 34 H 0.05 0.47 7.81 -51.93 -0.41 0.07 16 35 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.08 0.97 7.85 -51.93 -0.41 0.57 16 37 H 0.09 1.27 6.81 -51.93 -0.35 0.91 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.33 6.04 -51.93 -0.31 1.01 16 40 H 0.06 0.65 8.11 -51.93 -0.42 0.23 16 41 H 0.39 3.72 8.09 -40.82 -0.33 3.39 16 42 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 43 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.09 0.65 7.68 -51.93 -0.40 0.25 16 46 H 0.05 0.35 7.09 -51.93 -0.37 -0.02 16 LS Contribution 388.30 15.07 5.85 5.85 Total: -1.00 -34.96 388.30 -9.19 -44.15 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.15 Total: 1.96 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: -0.14 Total: -7.46 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.59 Total: -46.40 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.07 Total: -10.50 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.96 -9.19 -44.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500182531.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.119 kcal (2) G-P(sol) polarization free energy of solvation -34.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds