Wall clock time and date at job start Tue Mar 31 2020 20:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40085 * 126.03663 * 2 1 4 4 C 1.30833 * 108.20858 * 179.97438 * 3 2 1 5 5 C 1.39877 * 108.20100 * 0.02562 * 4 3 2 6 6 C 1.34945 * 126.03821 * 179.97438 * 2 1 3 7 7 C 1.50698 * 126.12786 * 0.02628 * 6 2 1 8 8 N 1.46899 * 109.46755 * 274.99867 * 7 6 2 9 9 C 1.48541 * 110.99890 * 287.39217 * 8 7 6 10 10 C 1.54938 * 103.22964 * 200.28057 * 9 8 7 11 11 C 1.54602 * 102.91919 * 37.41212 * 10 9 8 12 12 C 1.52996 * 110.39520 * 219.08201 * 11 10 9 13 13 N 1.46508 * 110.30494 * 96.96180 * 11 10 9 14 14 C 1.34768 * 120.00083 * 64.28365 * 13 11 10 15 15 O 1.21277 * 120.00043 * 359.97438 * 14 13 11 16 16 C 1.50707 * 120.00109 * 180.02562 * 14 13 11 17 17 S 1.80993 * 109.47349 * 179.97438 * 16 14 13 18 18 C 1.76197 * 100.00125 * 180.02562 * 17 16 14 19 19 H 1.08006 * 119.99815 * 359.97438 * 18 17 16 20 20 C 1.38790 * 120.00255 * 179.97438 * 18 17 16 21 21 N 1.31639 * 119.99917 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00287 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.46908 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46764 * 120.00165 * 22 20 18 25 25 H 1.48501 * 109.47057 * 240.00133 * 22 20 18 26 26 C 1.47901 * 110.99913 * 170.00221 * 8 7 6 27 27 H 1.09000 * 109.47005 * 90.02056 * 1 2 3 28 28 H 1.09003 * 109.46946 * 210.02365 * 1 2 3 29 29 H 1.09006 * 109.46968 * 330.02231 * 1 2 3 30 30 H 1.07995 * 125.90631 * 179.97438 * 4 3 2 31 31 H 1.07996 * 126.04364 * 179.97438 * 5 4 3 32 32 H 1.08997 * 109.47117 * 34.99201 * 7 6 2 33 33 H 1.08997 * 109.47369 * 154.99777 * 7 6 2 34 34 H 1.08993 * 110.66504 * 318.71732 * 9 8 7 35 35 H 1.09002 * 110.66158 * 81.84591 * 9 8 7 36 36 H 1.08998 * 110.72376 * 279.06400 * 10 9 8 37 37 H 1.08993 * 110.87774 * 155.84399 * 10 9 8 38 38 H 1.08997 * 109.47219 * 175.76846 * 12 11 10 39 39 H 1.09004 * 109.47405 * 295.76959 * 12 11 10 40 40 H 1.09003 * 109.46947 * 55.76842 * 12 11 10 41 41 H 0.97000 * 119.99226 * 244.28276 * 13 11 10 42 42 H 1.08995 * 109.46859 * 300.00320 * 16 14 13 43 43 H 1.09002 * 109.46873 * 59.99836 * 16 14 13 44 44 H 0.96995 * 119.99645 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.91512 * 265.18967 * 26 8 7 46 46 H 1.08994 * 109.92464 * 26.48585 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 0.0006 5 6 3.5437 -0.6665 0.0003 6 6 2.2589 -1.0912 0.0005 7 6 1.7974 -2.5258 0.0006 8 7 1.5321 -2.9546 1.3803 9 6 2.7990 -3.1380 2.1337 10 6 2.3826 -4.0570 3.3095 11 6 1.3601 -5.0141 2.6547 12 6 0.2006 -5.2925 3.6132 13 7 2.0122 -6.2682 2.2692 14 6 2.5288 -7.0775 3.2148 15 8 2.4544 -6.7676 4.3850 16 6 3.2001 -8.3672 2.8182 17 16 3.7860 -9.2234 4.3013 18 6 4.5069 -10.6526 3.5648 19 1 4.4875 -10.7753 2.4919 20 6 5.0997 -11.6207 4.3634 21 7 5.1229 -11.4714 5.6710 22 14 5.8634 -13.1362 3.5826 23 1 5.7062 -13.0657 2.1077 24 1 7.3074 -13.1944 3.9239 25 1 5.1840 -14.3530 4.0957 26 6 0.8541 -4.2688 1.4057 27 1 -0.3633 -0.0004 -1.0277 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 4.4054 1.3710 0.0003 31 1 4.4211 -1.2963 0.0003 32 1 0.8849 -2.6139 -0.5891 33 1 2.5728 -3.1570 -0.4334 34 1 3.5494 -3.6255 1.5115 35 1 3.1677 -2.1817 2.5048 36 1 1.9138 -3.4774 4.1047 37 1 3.2397 -4.6111 3.6918 38 1 -0.5467 -5.9066 3.1109 39 1 0.5736 -5.8197 4.4913 40 1 -0.2512 -4.3492 3.9205 41 1 2.0720 -6.5158 1.3332 42 1 2.4871 -9.0005 2.2904 43 1 4.0461 -8.1508 2.1659 44 1 5.5369 -12.1481 6.2291 45 1 -0.2250 -4.1288 1.4688 46 1 1.1060 -4.8342 0.5085 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500182531.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:30:13 Heat of formation + Delta-G solvation = 29.117144 kcal Electronic energy + Delta-G solvation = -26695.402546 eV Core-core repulsion = 22940.226908 eV Total energy + Delta-G solvation = -3755.175638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.18962 -41.38030 -39.36606 -35.91911 -34.58020 -34.14565 -33.31295 -31.57794 -30.62893 -29.88885 -27.67391 -27.65065 -27.41634 -25.52440 -22.98285 -22.04860 -21.92778 -20.77164 -20.42277 -19.80675 -18.06343 -17.64227 -17.20091 -16.87926 -16.82366 -16.50154 -16.13593 -15.96450 -15.54473 -15.36323 -14.97741 -14.69272 -14.50219 -14.45934 -14.23815 -14.07423 -13.73956 -13.52293 -13.39691 -13.15689 -13.13959 -13.09095 -12.91470 -12.72504 -12.58477 -12.44418 -12.39689 -11.98298 -11.80482 -11.69712 -11.56871 -11.15647 -10.67961 -10.26210 -10.24787 -10.06641 -9.58009 -9.39350 -8.64779 -8.34631 -6.11700 0.89319 1.28100 1.41098 1.47893 1.58458 1.67768 1.71391 1.88768 2.25125 2.30344 2.99643 3.02244 3.33217 3.39732 3.56263 3.75121 3.80165 3.95776 4.00203 4.12045 4.27140 4.31313 4.35954 4.42239 4.46623 4.50032 4.52796 4.57247 4.73607 4.75773 4.79737 4.82908 4.84696 4.88137 4.95634 5.05556 5.16319 5.20370 5.37876 5.42382 5.51807 5.75953 5.80211 5.87814 6.16779 6.20192 6.57453 6.79383 7.07141 7.32399 8.74618 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023743 B = 0.002060 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.017993 B =13588.000825 C =14087.935788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.368 5.368 3 N -0.338 5.338 4 C 0.036 3.964 5 C -0.285 4.285 6 C 0.096 3.904 7 C 0.108 3.892 8 N -0.512 5.512 9 C 0.049 3.951 10 C -0.125 4.125 11 C 0.167 3.833 12 C -0.155 4.155 13 N -0.707 5.707 14 C 0.537 3.463 15 O -0.551 6.551 16 C -0.131 4.131 17 S -0.149 6.149 18 C -0.544 4.544 19 H 0.082 0.918 20 C 0.012 3.988 21 N -0.911 5.911 22 Si 0.998 3.002 23 H -0.256 1.256 24 H -0.275 1.275 25 H -0.274 1.274 26 C 0.047 3.953 27 H 0.087 0.913 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.201 0.799 31 H 0.154 0.846 32 H 0.110 0.890 33 H 0.078 0.922 34 H 0.054 0.946 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.079 0.921 41 H 0.413 0.587 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.271 0.729 45 H 0.113 0.887 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.472 20.486 -17.619 28.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.151 5.151 3 N -0.161 5.161 4 C -0.148 4.148 5 C -0.315 4.315 6 C -0.034 4.034 7 C -0.022 4.022 8 N -0.237 5.237 9 C -0.079 4.079 10 C -0.164 4.164 11 C 0.081 3.919 12 C -0.213 4.213 13 N -0.362 5.362 14 C 0.323 3.677 15 O -0.428 6.428 16 C -0.282 4.282 17 S 0.078 5.922 18 C -0.692 4.692 19 H 0.100 0.900 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.180 1.180 24 H -0.200 1.200 25 H -0.200 1.200 26 C -0.081 4.081 27 H 0.106 0.894 28 H 0.125 0.875 29 H 0.105 0.895 30 H 0.218 0.782 31 H 0.172 0.828 32 H 0.128 0.872 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.098 0.902 41 H 0.251 0.749 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.080 0.920 45 H 0.131 0.869 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.861 22.382 -15.319 29.602 hybrid contribution 1.919 -2.569 -1.793 3.674 sum -9.941 19.813 -17.112 28.004 Atomic orbital electron populations 1.22108 0.72789 1.05562 1.04270 1.48718 1.07585 1.02935 1.55831 1.77302 1.02841 1.09499 1.26430 1.24231 0.95481 0.95792 0.99282 1.21525 0.96983 0.95218 1.17743 1.21114 0.91072 0.90642 1.00539 1.20907 1.02796 0.87985 0.90470 1.64809 1.19792 1.26751 1.12327 1.23143 0.91245 0.99087 0.94430 1.22786 0.98815 0.96752 0.98032 1.21146 0.92239 0.82920 0.95577 1.22137 0.96856 1.02702 0.99586 1.46001 1.59184 1.21146 1.09853 1.19926 0.77657 0.84415 0.85717 1.90675 1.57780 1.74468 1.19878 1.23391 1.03768 0.97400 1.03633 1.85560 1.74061 1.22980 1.09587 1.23232 1.43091 1.07000 0.95904 0.90009 1.26120 0.95984 1.01912 0.95238 1.70191 1.43276 1.36105 1.05211 0.84921 0.77681 0.76632 0.78814 1.18004 1.20019 1.19987 1.23163 1.01082 0.88238 0.95586 0.89425 0.87519 0.89534 0.78234 0.82829 0.87150 0.90414 0.92809 0.90590 0.90736 0.92818 0.91450 0.93583 0.90248 0.74921 0.87475 0.87625 0.92048 0.86929 0.90394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 11.16 127.77 1.43 2.35 16 2 N -0.37 -6.40 4.01 -356.02 -1.43 -7.83 16 3 N -0.34 -7.37 12.57 -57.02 -0.72 -8.09 16 4 C 0.04 0.67 12.03 85.24 1.03 1.69 16 5 C -0.28 -4.81 10.63 21.99 0.23 -4.58 16 6 C 0.10 1.50 6.06 41.41 0.25 1.75 16 7 C 0.11 1.11 4.65 85.56 0.40 1.51 16 8 N -0.51 -6.75 5.23 -887.57 -4.65 -11.40 16 9 C 0.05 0.86 6.05 86.65 0.52 1.38 16 10 C -0.12 -2.88 5.85 31.80 0.19 -2.70 16 11 C 0.17 3.28 0.94 4.48 0.00 3.29 16 12 C -0.15 -3.43 8.15 71.98 0.59 -2.84 16 13 N -0.71 -15.62 5.15 -418.94 -2.16 -17.78 16 14 C 0.54 18.29 7.04 87.66 0.62 18.91 16 15 O -0.55 -23.65 12.75 -3.02 -0.04 -23.69 16 16 C -0.13 -4.93 6.16 71.24 0.44 -4.49 16 17 S -0.15 -8.10 20.57 -56.49 -1.16 -9.26 16 18 C -0.54 -30.64 9.50 67.95 0.65 -30.00 16 19 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 20 C 0.01 0.68 5.49 84.85 0.47 1.15 16 21 N -0.91 -55.61 13.22 21.65 0.29 -55.33 16 22 Si 1.00 43.18 29.55 68.60 2.03 45.21 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 25 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 26 C 0.05 0.54 6.12 86.45 0.53 1.07 16 27 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.11 0.75 7.78 -2.39 -0.02 0.73 16 29 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.20 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 32 H 0.11 0.67 7.92 -2.39 -0.02 0.65 16 33 H 0.08 0.69 7.83 -2.39 -0.02 0.67 16 34 H 0.05 0.91 7.81 -2.39 -0.02 0.89 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.80 7.85 -2.39 -0.02 1.78 16 37 H 0.05 1.62 6.81 -2.39 -0.02 1.60 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.05 1.43 6.04 -2.39 -0.01 1.42 16 40 H 0.08 1.49 8.11 -2.39 -0.02 1.47 16 41 H 0.41 6.22 8.09 -92.71 -0.75 5.47 16 42 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 43 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 44 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 45 H 0.11 0.98 7.68 -2.39 -0.02 0.96 16 46 H 0.08 0.58 7.09 -2.39 -0.02 0.56 16 Total: -1.00 -79.82 388.30 -0.27 -80.09 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.23 Total: 19.58 kcal Atomic # 6 Polarization: -18.84 SS G_CDS: 7.33 Total: -11.51 kcal Atomic # 7 Polarization: -91.76 SS G_CDS: -8.66 Total: -100.43 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -0.04 Total: -23.69 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -8.10 SS G_CDS: -1.16 Total: -9.26 kcal Total: -79.82 -0.27 -80.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500182531.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.203 kcal (2) G-P(sol) polarization free energy of solvation -79.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds