Wall clock time and date at job start Tue Mar 31 2020 21:00:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 N 1.29516 * 121.53197 * 2 1
4 4 S 1.69476 * 107.84560 * 180.21599 * 3 2 1
5 5 C 1.72019 * 96.02599 * 359.74033 * 4 3 2
6 6 C 1.50694 * 127.31705 * 179.97438 * 5 4 3
7 7 C 1.37901 * 105.36408 * 0.02562 * 5 4 3
8 8 C 1.47336 * 123.08497 * 179.97438 * 7 5 4
9 9 O 1.21625 * 119.99850 * 90.00329 * 8 7 5
10 10 N 1.34773 * 120.00468 * 270.00107 * 8 7 5
11 11 C 1.46503 * 120.00418 * 180.02562 * 10 8 7
12 12 C 1.52998 * 109.47245 * 180.02562 * 11 10 8
13 13 N 1.46895 * 109.47032 * 179.97438 * 12 11 10
14 14 C 1.46896 * 111.00416 * 294.30139 * 13 12 11
15 15 C 1.53236 * 109.34374 * 172.74442 * 14 13 12
16 16 N 1.47084 * 108.51856 * 53.83375 * 15 14 13
17 17 C 1.36937 * 120.88395 * 128.83941 * 16 15 14
18 18 H 1.07993 * 119.99840 * 206.56276 * 17 16 15
19 19 C 1.38812 * 119.99834 * 26.55678 * 17 16 15
20 20 N 1.31619 * 119.99942 * 17.02194 * 19 17 16
21 21 Si 1.86798 * 119.99775 * 197.01797 * 19 17 16
22 22 H 1.48501 * 109.47363 * 60.00367 * 21 19 17
23 23 H 1.48503 * 109.47203 * 180.02562 * 21 19 17
24 24 H 1.48503 * 109.47355 * 300.00427 * 21 19 17
25 25 C 1.47085 * 118.23418 * 308.81217 * 16 15 14
26 26 C 1.46904 * 110.99980 * 169.99591 * 13 12 11
27 27 H 1.08999 * 109.47467 * 270.25444 * 1 2 3
28 28 H 1.09002 * 109.47419 * 30.25367 * 1 2 3
29 29 H 1.09002 * 109.47288 * 150.25344 * 1 2 3
30 30 H 1.09004 * 109.47216 * 270.02817 * 6 5 4
31 31 H 1.09007 * 109.47235 * 30.02193 * 6 5 4
32 32 H 1.08999 * 109.47656 * 150.02524 * 6 5 4
33 33 H 0.97001 * 119.99375 * 359.72529 * 10 8 7
34 34 H 1.08998 * 109.46794 * 300.00154 * 11 10 8
35 35 H 1.08996 * 109.46703 * 60.00017 * 11 10 8
36 36 H 1.09003 * 109.47057 * 300.00137 * 12 11 10
37 37 H 1.08996 * 109.46988 * 59.99633 * 12 11 10
38 38 H 1.09003 * 109.49171 * 292.70645 * 14 13 12
39 39 H 1.08999 * 109.49391 * 52.78253 * 14 13 12
40 40 H 1.08995 * 109.63075 * 294.11834 * 15 14 13
41 41 H 1.09006 * 109.62774 * 173.53518 * 15 14 13
42 42 H 0.97000 * 119.99697 * 179.97438 * 20 19 17
43 43 H 1.09003 * 109.62689 * 291.47863 * 25 16 15
44 44 H 1.08996 * 109.78749 * 170.99451 * 25 16 15
45 45 H 1.08996 * 109.49167 * 307.21824 * 26 13 12
46 46 H 1.08999 * 109.49171 * 67.29690 * 26 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.1843 1.1039 0.0000
4 16 3.8310 0.7029 -0.0061
5 6 3.6017 -1.0019 -0.0010
6 6 4.6677 -2.0670 -0.0035
7 6 2.2351 -1.1868 0.0048
8 6 1.6036 -2.5179 0.0099
9 8 1.3470 -3.0651 1.0654
10 7 1.3102 -3.1292 -1.1548
11 6 0.6817 -4.4526 -1.1496
12 6 0.4582 -4.9167 -2.5903
13 7 -0.1714 -6.2439 -2.5850
14 6 0.7341 -7.2540 -2.0214
15 6 -0.0183 -8.5798 -1.8659
16 7 -0.6143 -8.9336 -3.1631
17 6 -0.4205 -10.1736 -3.7109
18 1 -0.4676 -10.3041 -4.7819
19 6 -0.1634 -11.2627 -2.8896
20 7 -0.4304 -11.1940 -1.6026
21 14 0.5615 -12.8259 -3.6110
22 1 1.8782 -12.5226 -4.2271
23 1 0.7389 -13.8324 -2.5335
24 1 -0.3566 -13.3657 -4.6458
25 6 -1.4246 -7.9204 -3.8561
26 6 -0.6169 -6.6205 -3.9332
27 1 -0.3634 0.0046 1.0276
28 1 -0.3634 0.8877 -0.5178
29 1 -0.3634 -0.8923 -0.5099
30 1 4.9202 -2.3260 -1.0318
31 1 5.5561 -1.6932 0.5057
32 1 4.2980 -2.9524 0.5138
33 1 1.5112 -2.6910 -1.9965
34 1 1.3317 -5.1614 -0.6366
35 1 -0.2761 -4.3978 -0.6324
36 1 -0.1915 -4.2079 -3.1036
37 1 1.4163 -4.9714 -3.1071
38 1 1.5838 -7.3941 -2.6897
39 1 1.0891 -6.9206 -1.0462
40 1 -0.8048 -8.4691 -1.1195
41 1 0.6764 -9.3610 -1.5569
42 1 -0.2510 -11.9552 -1.0288
43 1 -2.3464 -7.7464 -3.3009
44 1 -1.6628 -8.2638 -4.8628
45 1 -1.2418 -5.8278 -4.3445
46 1 0.2515 -6.7695 -4.5749
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001660952919.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:00:11
Heat of formation + Delta-G solvation = 9.464237 kcal
Electronic energy + Delta-G solvation = -26770.432912 eV
Core-core repulsion = 23014.405060 eV
Total energy + Delta-G solvation = -3756.027852 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 338.152 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.47105 -39.87206 -39.23446 -36.84977 -35.44559 -34.37566 -33.28212 -31.63770
-31.05736 -30.24646 -29.08188 -27.53677 -25.15578 -24.34262 -23.93278 -22.65909
-22.28646 -20.85671 -20.34631 -19.28148 -18.71754 -17.88303 -17.44909 -16.88950
-16.51133 -16.16281 -15.76995 -15.72645 -15.61689 -15.30155 -15.14313 -14.99456
-14.85057 -14.54876 -14.35866 -14.26888 -13.96975 -13.60173 -13.25167 -13.20930
-13.15993 -12.98339 -12.83229 -12.59662 -12.55426 -12.29812 -12.25651 -12.02561
-11.85020 -11.84415 -11.54671 -11.43024 -11.11794 -10.57618 -10.48150 -10.20824
-9.72940 -9.28788 -8.67783 -7.86986 -5.31691 -0.55527 0.25312 0.63990
1.01142 1.40019 1.47063 1.49120 1.56287 2.04533 2.51432 3.09383
3.27633 3.28591 3.68270 3.71688 3.82898 3.88468 4.09212 4.14710
4.27194 4.31107 4.36569 4.45097 4.47953 4.53380 4.57016 4.57134
4.66312 4.69445 4.72776 4.83303 4.93829 4.98587 5.00110 5.05966
5.06868 5.21837 5.27597 5.38930 5.49295 5.61701 5.69405 6.15036
6.23696 6.37717 6.39241 7.05797 7.13738 7.85025 8.38900 9.19743
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.023609 B = 0.002063 C = 0.001995
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1185.728018 B =13566.779120 C =14031.149241
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.091 4.091
2 C 0.151 3.849
3 N -0.496 5.496
4 S 0.316 5.684
5 C -0.126 4.126
6 C -0.091 4.091
7 C -0.239 4.239
8 C 0.597 3.403
9 O -0.569 6.569
10 N -0.699 5.699
11 C 0.129 3.871
12 C 0.054 3.946
13 N -0.542 5.542
14 C 0.050 3.950
15 C 0.184 3.816
16 N -0.615 5.615
17 C -0.263 4.263
18 H 0.069 0.931
19 C -0.054 4.054
20 N -0.937 5.937
21 Si 0.969 3.031
22 H -0.278 1.278
23 H -0.295 1.295
24 H -0.275 1.275
25 C 0.141 3.859
26 C 0.059 3.941
27 H 0.088 0.912
28 H 0.098 0.902
29 H 0.084 0.916
30 H 0.111 0.889
31 H 0.105 0.895
32 H 0.070 0.930
33 H 0.416 0.584
34 H 0.056 0.944
35 H 0.066 0.934
36 H 0.103 0.897
37 H 0.047 0.953
38 H 0.023 0.977
39 H 0.077 0.923
40 H -0.004 1.004
41 H 0.055 0.945
42 H 0.250 0.750
43 H 0.015 0.985
44 H 0.062 0.938
45 H 0.101 0.899
46 H 0.028 0.972
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.449 25.913 -1.399 27.618
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.152 4.152
2 C -0.026 4.026
3 N -0.318 5.318
4 S 0.472 5.528
5 C -0.257 4.257
6 C -0.150 4.150
7 C -0.259 4.259
8 C 0.380 3.620
9 O -0.448 6.448
10 N -0.351 5.351
11 C 0.005 3.995
12 C -0.074 4.074
13 N -0.267 5.267
14 C -0.079 4.079
15 C 0.058 3.942
16 N -0.339 5.339
17 C -0.393 4.393
18 H 0.087 0.913
19 C -0.249 4.249
20 N -0.583 5.583
21 Si 0.797 3.203
22 H -0.204 1.204
23 H -0.222 1.222
24 H -0.200 1.200
25 C 0.015 3.985
26 C -0.070 4.070
27 H 0.106 0.894
28 H 0.116 0.884
29 H 0.103 0.897
30 H 0.129 0.871
31 H 0.123 0.877
32 H 0.089 0.911
33 H 0.253 0.747
34 H 0.074 0.926
35 H 0.085 0.915
36 H 0.121 0.879
37 H 0.065 0.935
38 H 0.042 0.958
39 H 0.095 0.905
40 H 0.014 0.986
41 H 0.073 0.927
42 H 0.059 0.941
43 H 0.033 0.967
44 H 0.081 0.919
45 H 0.119 0.881
46 H 0.047 0.953
Dipole moment (debyes) X Y Z Total
from point charges 9.726 27.488 -0.280 29.160
hybrid contribution 0.009 -2.756 -0.616 2.824
sum 9.735 24.732 -0.896 26.595
Atomic orbital electron populations
1.20725 0.85059 1.04952 1.04510 1.21463 0.99787 0.86588 0.94784
1.76305 1.01654 1.26488 1.27336 1.83886 1.08963 0.94105 1.65875
1.26471 0.97139 1.03767 0.98310 1.20595 0.94852 0.94167 1.05357
1.20105 0.93244 0.94962 1.17609 1.17454 0.77096 0.83791 0.83626
1.90845 1.54415 1.66832 1.32668 1.45746 1.61515 1.19258 1.08610
1.21219 0.97914 0.82726 0.97674 1.22188 0.99116 0.91046 0.95063
1.61743 1.40069 1.01788 1.23112 1.22611 0.93546 0.92988 0.98766
1.20612 0.94566 0.92688 0.86318 1.44420 1.57021 1.11086 1.21394
1.19509 1.42975 0.85436 0.91422 0.91292 1.25821 1.02162 1.00589
0.96326 1.70191 1.51373 1.31447 1.05299 0.85321 0.78799 0.79091
0.77111 1.20359 1.22151 1.20033 1.21164 0.92608 0.88670 0.96014
1.22463 0.98604 0.97908 0.88065 0.89398 0.88353 0.89713 0.87060
0.87671 0.91072 0.74665 0.92606 0.91545 0.87884 0.93453 0.95836
0.90464 0.98617 0.92660 0.94110 0.96731 0.91949 0.88090 0.95331
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.37 9.96 71.24 0.71 -0.66 16
2 C 0.15 2.86 6.75 43.14 0.29 3.15 16
3 N -0.50 -9.75 11.97 -51.10 -0.61 -10.36 16
4 S 0.32 4.59 23.69 -56.49 -1.34 3.25 16
5 C -0.13 -1.95 6.67 25.60 0.17 -1.78 16
6 C -0.09 -0.99 10.19 71.23 0.73 -0.26 16
7 C -0.24 -4.61 5.61 -20.72 -0.12 -4.73 16
8 C 0.60 13.69 5.77 86.64 0.50 14.19 16
9 O -0.57 -18.43 17.11 -4.11 -0.07 -18.50 16
10 N -0.70 -12.52 5.55 -466.46 -2.59 -15.11 16
11 C 0.13 2.93 5.61 86.38 0.48 3.41 16
12 C 0.05 1.15 5.08 86.30 0.44 1.58 16
13 N -0.54 -16.91 4.63 -895.29 -4.14 -21.05 16
14 C 0.05 1.87 5.46 86.38 0.47 2.34 16
15 C 0.18 9.08 5.42 86.35 0.47 9.55 16
16 N -0.62 -31.19 3.04 -698.12 -2.12 -33.31 16
17 C -0.26 -14.52 9.63 84.03 0.81 -13.71 16
18 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16
19 C -0.05 -3.03 4.94 84.86 0.42 -2.61 16
20 N -0.94 -56.21 11.15 21.65 0.24 -55.97 16
21 Si 0.97 44.87 29.59 68.60 2.03 46.90 16
22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16
23 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16
24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16
25 C 0.14 5.74 6.69 86.35 0.58 6.32 16
26 C 0.06 1.82 5.62 86.38 0.49 2.30 16
27 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16
28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16
29 H 0.08 1.19 7.39 -2.39 -0.02 1.18 16
30 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16
31 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16
32 H 0.07 1.05 7.85 -2.39 -0.02 1.03 16
33 H 0.42 4.87 8.46 -92.71 -0.78 4.08 16
34 H 0.06 1.50 6.40 -2.39 -0.02 1.48 16
35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16
36 H 0.10 1.68 7.97 -2.39 -0.02 1.66 16
37 H 0.05 0.93 8.12 -2.39 -0.02 0.91 16
38 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16
39 H 0.08 2.66 6.16 -2.39 -0.01 2.64 16
40 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16
41 H 0.06 3.07 6.12 -2.38 -0.01 3.05 16
42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16
43 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16
44 H 0.06 2.41 7.96 -2.39 -0.02 2.39 16
45 H 0.10 2.40 7.99 -2.39 -0.02 2.38 16
46 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16
Total: -1.00 -73.44 385.32 -1.96 -75.40
By element:
Atomic # 1 Polarization: 9.46 SS G_CDS: 0.21 Total: 9.67 kcal
Atomic # 6 Polarization: 12.66 SS G_CDS: 6.43 Total: 19.09 kcal
Atomic # 7 Polarization: -126.58 SS G_CDS: -9.23 Total: -135.80 kcal
Atomic # 8 Polarization: -18.43 SS G_CDS: -0.07 Total: -18.50 kcal
Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal
Atomic # 16 Polarization: 4.59 SS G_CDS: -1.34 Total: 3.25 kcal
Total: -73.44 -1.96 -75.40 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001660952919.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.862 kcal
(2) G-P(sol) polarization free energy of solvation -73.437 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.425 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.961 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.398 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.464 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds