Wall clock time and date at job start Tue Mar 31 2020 21:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29516 * 121.53197 * 2 1 4 4 S 1.69476 * 107.84560 * 180.21599 * 3 2 1 5 5 C 1.72019 * 96.02599 * 359.74033 * 4 3 2 6 6 C 1.50694 * 127.31705 * 179.97438 * 5 4 3 7 7 C 1.37901 * 105.36408 * 0.02562 * 5 4 3 8 8 C 1.47336 * 123.08497 * 179.97438 * 7 5 4 9 9 O 1.21625 * 119.99850 * 90.00329 * 8 7 5 10 10 N 1.34773 * 120.00468 * 270.00107 * 8 7 5 11 11 C 1.46503 * 120.00418 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47245 * 180.02562 * 11 10 8 13 13 N 1.46895 * 109.47032 * 179.97438 * 12 11 10 14 14 C 1.46896 * 111.00416 * 294.30139 * 13 12 11 15 15 C 1.53236 * 109.34374 * 172.74442 * 14 13 12 16 16 N 1.47084 * 108.51856 * 53.83375 * 15 14 13 17 17 C 1.36937 * 120.88395 * 128.83941 * 16 15 14 18 18 H 1.07993 * 119.99840 * 206.56276 * 17 16 15 19 19 C 1.38812 * 119.99834 * 26.55678 * 17 16 15 20 20 N 1.31619 * 119.99942 * 17.02194 * 19 17 16 21 21 Si 1.86798 * 119.99775 * 197.01797 * 19 17 16 22 22 H 1.48501 * 109.47363 * 60.00367 * 21 19 17 23 23 H 1.48503 * 109.47203 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47355 * 300.00427 * 21 19 17 25 25 C 1.47085 * 118.23418 * 308.81217 * 16 15 14 26 26 C 1.46904 * 110.99980 * 169.99591 * 13 12 11 27 27 H 1.08999 * 109.47467 * 270.25444 * 1 2 3 28 28 H 1.09002 * 109.47419 * 30.25367 * 1 2 3 29 29 H 1.09002 * 109.47288 * 150.25344 * 1 2 3 30 30 H 1.09004 * 109.47216 * 270.02817 * 6 5 4 31 31 H 1.09007 * 109.47235 * 30.02193 * 6 5 4 32 32 H 1.08999 * 109.47656 * 150.02524 * 6 5 4 33 33 H 0.97001 * 119.99375 * 359.72529 * 10 8 7 34 34 H 1.08998 * 109.46794 * 300.00154 * 11 10 8 35 35 H 1.08996 * 109.46703 * 60.00017 * 11 10 8 36 36 H 1.09003 * 109.47057 * 300.00137 * 12 11 10 37 37 H 1.08996 * 109.46988 * 59.99633 * 12 11 10 38 38 H 1.09003 * 109.49171 * 292.70645 * 14 13 12 39 39 H 1.08999 * 109.49391 * 52.78253 * 14 13 12 40 40 H 1.08995 * 109.63075 * 294.11834 * 15 14 13 41 41 H 1.09006 * 109.62774 * 173.53518 * 15 14 13 42 42 H 0.97000 * 119.99697 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.62689 * 291.47863 * 25 16 15 44 44 H 1.08996 * 109.78749 * 170.99451 * 25 16 15 45 45 H 1.08996 * 109.49167 * 307.21824 * 26 13 12 46 46 H 1.08999 * 109.49171 * 67.29690 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1843 1.1039 0.0000 4 16 3.8310 0.7029 -0.0061 5 6 3.6017 -1.0019 -0.0010 6 6 4.6677 -2.0670 -0.0035 7 6 2.2351 -1.1868 0.0048 8 6 1.6036 -2.5179 0.0099 9 8 1.3470 -3.0651 1.0654 10 7 1.3102 -3.1292 -1.1548 11 6 0.6817 -4.4526 -1.1496 12 6 0.4582 -4.9167 -2.5903 13 7 -0.1714 -6.2439 -2.5850 14 6 0.7341 -7.2540 -2.0214 15 6 -0.0183 -8.5798 -1.8659 16 7 -0.6143 -8.9336 -3.1631 17 6 -0.4205 -10.1736 -3.7109 18 1 -0.4676 -10.3041 -4.7819 19 6 -0.1634 -11.2627 -2.8896 20 7 -0.4304 -11.1940 -1.6026 21 14 0.5615 -12.8259 -3.6110 22 1 1.8782 -12.5226 -4.2271 23 1 0.7389 -13.8324 -2.5335 24 1 -0.3566 -13.3657 -4.6458 25 6 -1.4246 -7.9204 -3.8561 26 6 -0.6169 -6.6205 -3.9332 27 1 -0.3634 0.0046 1.0276 28 1 -0.3634 0.8877 -0.5178 29 1 -0.3634 -0.8923 -0.5099 30 1 4.9202 -2.3260 -1.0318 31 1 5.5561 -1.6932 0.5057 32 1 4.2980 -2.9524 0.5138 33 1 1.5112 -2.6910 -1.9965 34 1 1.3317 -5.1614 -0.6366 35 1 -0.2761 -4.3978 -0.6324 36 1 -0.1915 -4.2079 -3.1036 37 1 1.4163 -4.9714 -3.1071 38 1 1.5838 -7.3941 -2.6897 39 1 1.0891 -6.9206 -1.0462 40 1 -0.8048 -8.4691 -1.1195 41 1 0.6764 -9.3610 -1.5569 42 1 -0.2510 -11.9552 -1.0288 43 1 -2.3464 -7.7464 -3.3009 44 1 -1.6628 -8.2638 -4.8628 45 1 -1.2418 -5.8278 -4.3445 46 1 0.2515 -6.7695 -4.5749 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660952919.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:00:11 Heat of formation + Delta-G solvation = 9.464237 kcal Electronic energy + Delta-G solvation = -26770.432912 eV Core-core repulsion = 23014.405060 eV Total energy + Delta-G solvation = -3756.027852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.47105 -39.87206 -39.23446 -36.84977 -35.44559 -34.37566 -33.28212 -31.63770 -31.05736 -30.24646 -29.08188 -27.53677 -25.15578 -24.34262 -23.93278 -22.65909 -22.28646 -20.85671 -20.34631 -19.28148 -18.71754 -17.88303 -17.44909 -16.88950 -16.51133 -16.16281 -15.76995 -15.72645 -15.61689 -15.30155 -15.14313 -14.99456 -14.85057 -14.54876 -14.35866 -14.26888 -13.96975 -13.60173 -13.25167 -13.20930 -13.15993 -12.98339 -12.83229 -12.59662 -12.55426 -12.29812 -12.25651 -12.02561 -11.85020 -11.84415 -11.54671 -11.43024 -11.11794 -10.57618 -10.48150 -10.20824 -9.72940 -9.28788 -8.67783 -7.86986 -5.31691 -0.55527 0.25312 0.63990 1.01142 1.40019 1.47063 1.49120 1.56287 2.04533 2.51432 3.09383 3.27633 3.28591 3.68270 3.71688 3.82898 3.88468 4.09212 4.14710 4.27194 4.31107 4.36569 4.45097 4.47953 4.53380 4.57016 4.57134 4.66312 4.69445 4.72776 4.83303 4.93829 4.98587 5.00110 5.05966 5.06868 5.21837 5.27597 5.38930 5.49295 5.61701 5.69405 6.15036 6.23696 6.37717 6.39241 7.05797 7.13738 7.85025 8.38900 9.19743 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023609 B = 0.002063 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.728018 B =13566.779120 C =14031.149241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.151 3.849 3 N -0.496 5.496 4 S 0.316 5.684 5 C -0.126 4.126 6 C -0.091 4.091 7 C -0.239 4.239 8 C 0.597 3.403 9 O -0.569 6.569 10 N -0.699 5.699 11 C 0.129 3.871 12 C 0.054 3.946 13 N -0.542 5.542 14 C 0.050 3.950 15 C 0.184 3.816 16 N -0.615 5.615 17 C -0.263 4.263 18 H 0.069 0.931 19 C -0.054 4.054 20 N -0.937 5.937 21 Si 0.969 3.031 22 H -0.278 1.278 23 H -0.295 1.295 24 H -0.275 1.275 25 C 0.141 3.859 26 C 0.059 3.941 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.111 0.889 31 H 0.105 0.895 32 H 0.070 0.930 33 H 0.416 0.584 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.047 0.953 38 H 0.023 0.977 39 H 0.077 0.923 40 H -0.004 1.004 41 H 0.055 0.945 42 H 0.250 0.750 43 H 0.015 0.985 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.449 25.913 -1.399 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.026 4.026 3 N -0.318 5.318 4 S 0.472 5.528 5 C -0.257 4.257 6 C -0.150 4.150 7 C -0.259 4.259 8 C 0.380 3.620 9 O -0.448 6.448 10 N -0.351 5.351 11 C 0.005 3.995 12 C -0.074 4.074 13 N -0.267 5.267 14 C -0.079 4.079 15 C 0.058 3.942 16 N -0.339 5.339 17 C -0.393 4.393 18 H 0.087 0.913 19 C -0.249 4.249 20 N -0.583 5.583 21 Si 0.797 3.203 22 H -0.204 1.204 23 H -0.222 1.222 24 H -0.200 1.200 25 C 0.015 3.985 26 C -0.070 4.070 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.103 0.897 30 H 0.129 0.871 31 H 0.123 0.877 32 H 0.089 0.911 33 H 0.253 0.747 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.065 0.935 38 H 0.042 0.958 39 H 0.095 0.905 40 H 0.014 0.986 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.033 0.967 44 H 0.081 0.919 45 H 0.119 0.881 46 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 9.726 27.488 -0.280 29.160 hybrid contribution 0.009 -2.756 -0.616 2.824 sum 9.735 24.732 -0.896 26.595 Atomic orbital electron populations 1.20725 0.85059 1.04952 1.04510 1.21463 0.99787 0.86588 0.94784 1.76305 1.01654 1.26488 1.27336 1.83886 1.08963 0.94105 1.65875 1.26471 0.97139 1.03767 0.98310 1.20595 0.94852 0.94167 1.05357 1.20105 0.93244 0.94962 1.17609 1.17454 0.77096 0.83791 0.83626 1.90845 1.54415 1.66832 1.32668 1.45746 1.61515 1.19258 1.08610 1.21219 0.97914 0.82726 0.97674 1.22188 0.99116 0.91046 0.95063 1.61743 1.40069 1.01788 1.23112 1.22611 0.93546 0.92988 0.98766 1.20612 0.94566 0.92688 0.86318 1.44420 1.57021 1.11086 1.21394 1.19509 1.42975 0.85436 0.91422 0.91292 1.25821 1.02162 1.00589 0.96326 1.70191 1.51373 1.31447 1.05299 0.85321 0.78799 0.79091 0.77111 1.20359 1.22151 1.20033 1.21164 0.92608 0.88670 0.96014 1.22463 0.98604 0.97908 0.88065 0.89398 0.88353 0.89713 0.87060 0.87671 0.91072 0.74665 0.92606 0.91545 0.87884 0.93453 0.95836 0.90464 0.98617 0.92660 0.94110 0.96731 0.91949 0.88090 0.95331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.37 9.96 71.24 0.71 -0.66 16 2 C 0.15 2.86 6.75 43.14 0.29 3.15 16 3 N -0.50 -9.75 11.97 -51.10 -0.61 -10.36 16 4 S 0.32 4.59 23.69 -56.49 -1.34 3.25 16 5 C -0.13 -1.95 6.67 25.60 0.17 -1.78 16 6 C -0.09 -0.99 10.19 71.23 0.73 -0.26 16 7 C -0.24 -4.61 5.61 -20.72 -0.12 -4.73 16 8 C 0.60 13.69 5.77 86.64 0.50 14.19 16 9 O -0.57 -18.43 17.11 -4.11 -0.07 -18.50 16 10 N -0.70 -12.52 5.55 -466.46 -2.59 -15.11 16 11 C 0.13 2.93 5.61 86.38 0.48 3.41 16 12 C 0.05 1.15 5.08 86.30 0.44 1.58 16 13 N -0.54 -16.91 4.63 -895.29 -4.14 -21.05 16 14 C 0.05 1.87 5.46 86.38 0.47 2.34 16 15 C 0.18 9.08 5.42 86.35 0.47 9.55 16 16 N -0.62 -31.19 3.04 -698.12 -2.12 -33.31 16 17 C -0.26 -14.52 9.63 84.03 0.81 -13.71 16 18 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 19 C -0.05 -3.03 4.94 84.86 0.42 -2.61 16 20 N -0.94 -56.21 11.15 21.65 0.24 -55.97 16 21 Si 0.97 44.87 29.59 68.60 2.03 46.90 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 25 C 0.14 5.74 6.69 86.35 0.58 6.32 16 26 C 0.06 1.82 5.62 86.38 0.49 2.30 16 27 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.19 7.39 -2.39 -0.02 1.18 16 30 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.07 1.05 7.85 -2.39 -0.02 1.03 16 33 H 0.42 4.87 8.46 -92.71 -0.78 4.08 16 34 H 0.06 1.50 6.40 -2.39 -0.02 1.48 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.10 1.68 7.97 -2.39 -0.02 1.66 16 37 H 0.05 0.93 8.12 -2.39 -0.02 0.91 16 38 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.08 2.66 6.16 -2.39 -0.01 2.64 16 40 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 41 H 0.06 3.07 6.12 -2.38 -0.01 3.05 16 42 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.06 2.41 7.96 -2.39 -0.02 2.39 16 45 H 0.10 2.40 7.99 -2.39 -0.02 2.38 16 46 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -73.44 385.32 -1.96 -75.40 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.21 Total: 9.67 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 6.43 Total: 19.09 kcal Atomic # 7 Polarization: -126.58 SS G_CDS: -9.23 Total: -135.80 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.07 Total: -18.50 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 16 Polarization: 4.59 SS G_CDS: -1.34 Total: 3.25 kcal Total: -73.44 -1.96 -75.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660952919.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.862 kcal (2) G-P(sol) polarization free energy of solvation -73.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds