Wall clock time and date at job start Tue Mar 31 2020 21:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31241 * 124.05976 * 2 1 4 4 N 1.27335 * 120.03967 * 179.97438 * 3 2 1 5 5 S 1.56635 * 109.74063 * 359.69218 * 4 3 2 6 6 C 1.38254 * 124.05300 * 179.97438 * 2 1 3 7 7 C 1.47166 * 128.47660 * 0.02562 * 6 2 1 8 8 O 1.21623 * 120.00105 * 309.93185 * 7 6 2 9 9 N 1.34779 * 120.00047 * 129.92162 * 7 6 2 10 10 C 1.46928 * 120.62745 * 3.21688 * 9 7 6 11 11 C 1.53191 * 108.88876 * 233.66738 * 10 9 7 12 12 C 1.53033 * 109.31767 * 305.29502 * 11 10 9 13 13 C 1.53046 * 109.53786 * 61.36376 * 12 11 10 14 14 H 1.09001 * 109.49606 * 178.68296 * 13 12 11 15 15 C 1.52995 * 109.49296 * 58.58738 * 13 12 11 16 16 C 1.47208 * 120.81403 * 183.34865 * 9 7 6 17 17 H 1.08994 * 109.55737 * 246.16866 * 16 9 7 18 18 C 1.52995 * 109.64941 * 6.47252 * 16 9 7 19 19 C 1.53007 * 109.46777 * 173.29673 * 18 16 9 20 20 N 1.46504 * 109.46865 * 182.99237 * 19 18 16 21 21 C 1.36936 * 119.99564 * 180.02562 * 20 19 18 22 22 H 1.08000 * 120.00560 * 0.02562 * 21 20 19 23 23 C 1.38820 * 119.99750 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99850 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99774 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47052 * 89.99794 * 25 23 21 27 27 H 1.48500 * 109.46811 * 209.99623 * 25 23 21 28 28 H 1.48498 * 109.47570 * 329.99736 * 25 23 21 29 29 H 1.09000 * 109.46594 * 270.02857 * 1 2 3 30 30 H 1.08997 * 109.46884 * 30.02298 * 1 2 3 31 31 H 1.08995 * 109.47347 * 150.02259 * 1 2 3 32 32 H 1.08996 * 109.58495 * 113.81262 * 10 9 7 33 33 H 1.08997 * 109.58853 * 353.52700 * 10 9 7 34 34 H 1.09002 * 109.49427 * 65.25115 * 11 10 9 35 35 H 1.09006 * 109.49442 * 185.34063 * 11 10 9 36 36 H 1.09000 * 109.46410 * 181.38784 * 12 11 10 37 37 H 1.09007 * 109.46012 * 301.34582 * 12 11 10 38 38 H 1.09005 * 109.47237 * 60.00468 * 15 13 12 39 39 H 1.09008 * 109.46933 * 179.97438 * 15 13 12 40 40 H 1.08997 * 109.47626 * 299.99913 * 15 13 12 41 41 H 1.08994 * 109.47462 * 293.29905 * 18 16 9 42 42 H 1.08998 * 109.47196 * 53.30225 * 18 16 9 43 43 H 1.08992 * 109.47126 * 302.99665 * 19 18 16 44 44 H 1.08995 * 109.46667 * 62.99903 * 19 18 16 45 45 H 0.97001 * 120.00165 * 0.02562 * 20 19 18 46 46 H 0.96994 * 119.99562 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5123 0.9980 0.0005 5 16 3.9367 -0.5097 0.0089 6 6 2.2812 -1.1455 0.0005 7 6 1.8394 -2.5492 0.0006 8 8 1.0116 -2.9262 0.8081 9 7 2.3519 -3.4171 -0.8942 10 6 3.4031 -2.9944 -1.8296 11 6 2.9582 -3.3245 -3.2578 12 6 2.6024 -4.8102 -3.3465 13 6 1.4423 -5.1163 -2.3963 14 1 1.1740 -6.1697 -2.4773 15 6 0.2362 -4.2514 -2.7679 16 6 1.8700 -4.8066 -0.9583 17 1 2.6701 -5.4844 -0.6610 18 6 0.6750 -4.9806 -0.0190 19 6 0.0737 -6.3743 -0.2115 20 7 -1.1132 -6.5154 0.6357 21 6 -1.8221 -7.6869 0.6313 22 1 -1.5061 -8.5071 0.0037 23 6 -2.9471 -7.8204 1.4336 24 7 -3.3319 -6.8211 2.1989 25 14 -3.9146 -9.4183 1.4271 26 1 -3.3711 -10.3302 2.4655 27 1 -5.3428 -9.1332 1.7170 28 1 -3.7989 -10.0616 0.0937 29 1 -0.3632 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5134 32 1 4.3283 -3.5244 -1.6033 33 1 3.5651 -1.9205 -1.7362 34 1 2.0847 -2.7251 -3.5143 35 1 3.7689 -3.1024 -3.9518 36 1 2.3090 -5.0531 -4.3678 37 1 3.4692 -5.4086 -3.0659 38 1 -0.0660 -4.4701 -3.7921 39 1 -0.5899 -4.4701 -2.0912 40 1 0.5050 -3.1983 -2.6853 41 1 1.0048 -4.8666 1.0136 42 1 -0.0780 -4.2257 -0.2453 43 1 -0.2074 -6.5076 -1.2560 44 1 0.8098 -7.1289 0.0659 45 1 -1.3968 -5.7789 1.1997 46 1 -4.1177 -6.9145 2.7598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691289982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:09 Heat of formation + Delta-G solvation = 61.443696 kcal Electronic energy + Delta-G solvation = -28336.514839 eV Core-core repulsion = 24582.740985 eV Total energy + Delta-G solvation = -3753.773854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.34003 -40.67174 -37.93872 -35.42687 -33.91708 -33.42377 -32.84106 -30.83332 -29.23213 -28.09172 -27.17459 -26.81171 -25.19303 -23.91219 -23.00906 -22.00547 -20.87833 -20.08777 -18.80030 -18.60783 -17.43421 -16.81014 -16.39717 -16.22210 -15.49019 -15.08554 -14.95298 -14.58568 -14.38442 -14.07890 -14.01014 -13.57321 -13.30375 -13.24507 -13.09818 -12.93790 -12.85184 -12.73201 -12.49427 -11.91717 -11.87243 -11.78866 -11.36792 -11.23710 -11.16523 -10.85513 -10.81342 -10.65662 -10.49774 -10.44723 -10.26949 -9.98870 -9.96169 -9.88832 -9.61871 -9.09328 -8.80802 -8.68802 -6.81634 -5.67901 -2.96076 -0.43642 0.45666 1.20818 1.75532 2.47150 2.78702 3.47665 3.52192 3.54317 3.61749 4.10371 4.35904 4.41109 4.58211 4.65047 4.68657 4.81119 5.00011 5.01272 5.05977 5.20972 5.39533 5.41277 5.44359 5.47117 5.57653 5.62045 5.64568 5.67164 5.78587 5.87625 5.89909 5.99911 6.05715 6.17036 6.26201 6.35207 6.41514 6.53450 6.56851 7.01623 7.06171 7.17547 7.40010 7.76011 7.91975 8.51030 9.61779 10.22992 10.57557 11.54942 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015040 B = 0.003219 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.255178 B = 8697.165002 C = 9871.568447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.089 3.911 3 N -0.244 5.244 4 N -0.265 5.265 5 S 0.409 5.591 6 C -0.278 4.278 7 C 0.594 3.406 8 O -0.483 6.483 9 N -0.595 5.595 10 C 0.099 3.901 11 C -0.136 4.136 12 C -0.115 4.115 13 C -0.105 4.105 14 H 0.094 0.906 15 C -0.149 4.149 16 C 0.159 3.841 17 H 0.077 0.923 18 C -0.117 4.117 19 C 0.147 3.853 20 N -0.731 5.731 21 C -0.237 4.237 22 H 0.069 0.931 23 C -0.015 4.015 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.283 1.283 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.050 0.950 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.020 0.980 44 H 0.012 0.988 45 H 0.385 0.615 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.940 12.750 -11.906 25.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.057 4.057 3 N -0.112 5.112 4 N -0.244 5.244 5 S 0.545 5.455 6 C -0.419 4.419 7 C 0.378 3.622 8 O -0.357 6.357 9 N -0.329 5.329 10 C -0.024 4.024 11 C -0.174 4.174 12 C -0.153 4.153 13 C -0.124 4.124 14 H 0.112 0.888 15 C -0.206 4.206 16 C 0.057 3.943 17 H 0.095 0.905 18 C -0.155 4.155 19 C 0.019 3.981 20 N -0.375 5.375 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.211 4.211 24 N -0.580 5.580 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.113 0.887 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.069 0.931 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.038 0.962 44 H 0.030 0.970 45 H 0.219 0.781 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 19.061 13.531 -11.485 26.045 hybrid contribution -1.754 -1.139 0.190 2.100 sum 17.307 12.392 -11.294 24.097 Atomic orbital electron populations 1.20427 0.83752 1.04353 1.04873 1.22891 1.00124 0.84955 0.97686 1.70586 0.96931 1.27961 1.15676 1.78822 1.09426 1.15869 1.20308 1.82618 1.10004 1.01074 1.51799 1.27955 0.98176 1.00468 1.15320 1.16616 0.81896 0.81808 0.81912 1.91043 1.31330 1.75682 1.37647 1.48065 1.38819 1.11703 1.34303 1.21948 0.90741 0.99972 0.89772 1.21952 1.02095 0.98022 0.95356 1.21582 0.98415 0.95310 0.99975 1.21603 0.95532 1.01667 0.93630 0.88828 1.21901 0.98087 0.99125 1.01450 1.21473 0.97502 0.79296 0.95995 0.90535 1.22238 0.95762 0.98236 0.99261 1.20838 0.89638 0.93309 0.94309 1.42337 1.28504 1.16138 1.50472 1.19225 1.05396 0.92176 1.20057 0.91344 1.24738 0.98948 0.97696 0.99734 1.69676 1.27264 1.30763 1.30339 0.86216 0.79444 0.83213 0.77479 1.21821 1.21830 1.20844 0.88674 0.89610 0.89410 0.90310 0.91142 0.90907 0.90691 0.91415 0.91666 0.92980 0.91025 0.93145 0.90038 0.90135 0.96211 0.97033 0.78114 0.93604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.17 36.01 0.37 -0.39 16 2 C 0.09 1.05 7.00 -82.84 -0.58 0.47 16 3 N -0.24 -3.06 11.54 33.42 0.39 -2.67 16 4 N -0.26 -3.07 12.51 60.35 0.75 -2.32 16 5 S 0.41 3.67 21.21 -107.50 -2.28 1.39 16 6 C -0.28 -3.17 5.57 -35.95 -0.20 -3.37 16 7 C 0.59 7.81 7.07 -12.63 -0.09 7.72 16 8 O -0.48 -8.20 12.60 5.26 0.07 -8.13 16 9 N -0.59 -6.56 2.42 -166.37 -0.40 -6.97 16 10 C 0.10 0.76 6.08 -3.71 -0.02 0.74 16 11 C -0.14 -0.96 5.74 -26.62 -0.15 -1.11 16 12 C -0.12 -0.92 5.43 -26.69 -0.14 -1.06 16 13 C -0.11 -1.16 2.19 -90.50 -0.20 -1.35 16 14 H 0.09 1.11 6.62 -51.93 -0.34 0.77 16 15 C -0.15 -1.78 8.05 37.15 0.30 -1.48 16 16 C 0.16 1.99 2.79 -67.45 -0.19 1.80 16 17 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 18 C -0.12 -2.00 2.73 -26.73 -0.07 -2.07 16 19 C 0.15 2.98 5.67 -4.04 -0.02 2.96 16 20 N -0.73 -19.19 5.60 -59.91 -0.34 -19.52 16 21 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 22 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 23 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 24 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 25 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 28 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 29 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.94 7.90 -51.93 -0.41 0.53 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.50 4.44 -43.13 -0.19 0.31 16 34 H 0.07 0.58 6.34 -51.93 -0.33 0.25 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 1.07 5.98 -51.92 -0.31 0.76 16 40 H 0.05 0.58 5.97 -51.93 -0.31 0.27 16 41 H 0.08 1.57 6.70 -51.93 -0.35 1.23 16 42 H 0.08 1.50 5.42 -51.93 -0.28 1.22 16 43 H 0.02 0.39 5.78 -51.93 -0.30 0.09 16 44 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 45 H 0.39 10.88 7.67 -40.82 -0.31 10.56 16 46 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 366.03 15.07 5.52 5.52 Total: -1.00 -33.69 366.03 -8.34 -42.02 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -6.49 Total: 5.84 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -1.25 Total: -4.67 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: 1.13 Total: -59.73 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.07 Total: -8.13 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -2.28 Total: 1.39 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.69 -8.34 -42.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691289982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.466 kcal (2) G-P(sol) polarization free energy of solvation -33.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds