Wall clock time and date at job start Tue Mar 31 2020 21:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31241 * 124.05976 * 2 1 4 4 N 1.27335 * 120.03967 * 179.97438 * 3 2 1 5 5 S 1.56635 * 109.74063 * 359.69218 * 4 3 2 6 6 C 1.38254 * 124.05300 * 179.97438 * 2 1 3 7 7 C 1.47166 * 128.47660 * 0.02562 * 6 2 1 8 8 O 1.21623 * 120.00105 * 309.93185 * 7 6 2 9 9 N 1.34779 * 120.00047 * 129.92162 * 7 6 2 10 10 C 1.46928 * 120.62745 * 3.21688 * 9 7 6 11 11 C 1.53191 * 108.88876 * 233.66738 * 10 9 7 12 12 C 1.53033 * 109.31767 * 305.29502 * 11 10 9 13 13 C 1.53046 * 109.53786 * 61.36376 * 12 11 10 14 14 H 1.09001 * 109.49606 * 178.68296 * 13 12 11 15 15 C 1.52995 * 109.49296 * 58.58738 * 13 12 11 16 16 C 1.47208 * 120.81403 * 183.34865 * 9 7 6 17 17 H 1.08994 * 109.55737 * 246.16866 * 16 9 7 18 18 C 1.52995 * 109.64941 * 6.47252 * 16 9 7 19 19 C 1.53007 * 109.46777 * 173.29673 * 18 16 9 20 20 N 1.46504 * 109.46865 * 182.99237 * 19 18 16 21 21 C 1.36936 * 119.99564 * 180.02562 * 20 19 18 22 22 H 1.08000 * 120.00560 * 0.02562 * 21 20 19 23 23 C 1.38820 * 119.99750 * 180.02562 * 21 20 19 24 24 N 1.31618 * 119.99850 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 119.99774 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47052 * 89.99794 * 25 23 21 27 27 H 1.48500 * 109.46811 * 209.99623 * 25 23 21 28 28 H 1.48498 * 109.47570 * 329.99736 * 25 23 21 29 29 H 1.09000 * 109.46594 * 270.02857 * 1 2 3 30 30 H 1.08997 * 109.46884 * 30.02298 * 1 2 3 31 31 H 1.08995 * 109.47347 * 150.02259 * 1 2 3 32 32 H 1.08996 * 109.58495 * 113.81262 * 10 9 7 33 33 H 1.08997 * 109.58853 * 353.52700 * 10 9 7 34 34 H 1.09002 * 109.49427 * 65.25115 * 11 10 9 35 35 H 1.09006 * 109.49442 * 185.34063 * 11 10 9 36 36 H 1.09000 * 109.46410 * 181.38784 * 12 11 10 37 37 H 1.09007 * 109.46012 * 301.34582 * 12 11 10 38 38 H 1.09005 * 109.47237 * 60.00468 * 15 13 12 39 39 H 1.09008 * 109.46933 * 179.97438 * 15 13 12 40 40 H 1.08997 * 109.47626 * 299.99913 * 15 13 12 41 41 H 1.08994 * 109.47462 * 293.29905 * 18 16 9 42 42 H 1.08998 * 109.47196 * 53.30225 * 18 16 9 43 43 H 1.08992 * 109.47126 * 302.99665 * 19 18 16 44 44 H 1.08995 * 109.46667 * 62.99903 * 19 18 16 45 45 H 0.97001 * 120.00165 * 0.02562 * 20 19 18 46 46 H 0.96994 * 119.99562 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2420 1.0873 0.0000 4 7 3.5123 0.9980 0.0005 5 16 3.9367 -0.5097 0.0089 6 6 2.2812 -1.1455 0.0005 7 6 1.8394 -2.5492 0.0006 8 8 1.0116 -2.9262 0.8081 9 7 2.3519 -3.4171 -0.8942 10 6 3.4031 -2.9944 -1.8296 11 6 2.9582 -3.3245 -3.2578 12 6 2.6024 -4.8102 -3.3465 13 6 1.4423 -5.1163 -2.3963 14 1 1.1740 -6.1697 -2.4773 15 6 0.2362 -4.2514 -2.7679 16 6 1.8700 -4.8066 -0.9583 17 1 2.6701 -5.4844 -0.6610 18 6 0.6750 -4.9806 -0.0190 19 6 0.0737 -6.3743 -0.2115 20 7 -1.1132 -6.5154 0.6357 21 6 -1.8221 -7.6869 0.6313 22 1 -1.5061 -8.5071 0.0037 23 6 -2.9471 -7.8204 1.4336 24 7 -3.3319 -6.8211 2.1989 25 14 -3.9146 -9.4183 1.4271 26 1 -3.3711 -10.3302 2.4655 27 1 -5.3428 -9.1332 1.7170 28 1 -3.7989 -10.0616 0.0937 29 1 -0.3632 0.0005 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3634 -0.8901 -0.5134 32 1 4.3283 -3.5244 -1.6033 33 1 3.5651 -1.9205 -1.7362 34 1 2.0847 -2.7251 -3.5143 35 1 3.7689 -3.1024 -3.9518 36 1 2.3090 -5.0531 -4.3678 37 1 3.4692 -5.4086 -3.0659 38 1 -0.0660 -4.4701 -3.7921 39 1 -0.5899 -4.4701 -2.0912 40 1 0.5050 -3.1983 -2.6853 41 1 1.0048 -4.8666 1.0136 42 1 -0.0780 -4.2257 -0.2453 43 1 -0.2074 -6.5076 -1.2560 44 1 0.8098 -7.1289 0.0659 45 1 -1.3968 -5.7789 1.1997 46 1 -4.1177 -6.9145 2.7598 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691289982.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:08 Heat of formation + Delta-G solvation = 38.992147 kcal Electronic energy + Delta-G solvation = -28337.488412 eV Core-core repulsion = 24582.740985 eV Total energy + Delta-G solvation = -3754.747426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.25971 -41.60715 -38.92694 -37.01256 -35.19183 -34.28064 -34.15647 -32.53621 -30.27343 -29.38049 -28.09403 -27.75119 -26.44051 -25.26823 -24.27052 -23.15790 -22.14436 -21.03286 -19.64554 -19.52659 -19.14283 -18.08316 -17.36334 -17.20772 -16.71349 -16.44222 -16.00252 -15.79073 -15.39390 -15.20788 -15.11473 -14.93910 -14.75746 -14.32723 -14.17006 -14.01824 -13.83760 -13.65956 -13.54762 -13.11763 -12.98563 -12.84558 -12.69367 -12.58505 -12.44817 -12.33628 -12.11085 -11.98001 -11.76371 -11.73060 -11.41306 -11.28496 -11.26350 -10.91583 -10.84706 -10.69413 -10.27641 -9.65154 -8.96691 -7.92333 -5.21903 -1.30609 -0.38113 0.38030 0.84924 1.46570 1.49697 1.50243 1.58056 1.85543 2.57305 2.74983 3.23307 3.40560 3.52114 3.68844 3.77023 3.85895 4.02309 4.07489 4.16987 4.19441 4.35387 4.47183 4.51671 4.55096 4.60685 4.64211 4.66067 4.73756 4.81109 4.83420 4.89350 4.97862 5.03832 5.11371 5.20657 5.26850 5.31787 5.42898 5.45920 5.50606 5.53226 5.70692 6.19203 6.29270 6.53868 6.93396 7.34125 8.12456 8.35346 9.31735 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.015040 B = 0.003219 C = 0.002836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.255178 B = 8697.165002 C = 9871.568447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.085 3.915 3 N -0.267 5.267 4 N -0.290 5.290 5 S 0.506 5.494 6 C -0.303 4.303 7 C 0.594 3.406 8 O -0.535 6.535 9 N -0.588 5.588 10 C 0.092 3.908 11 C -0.133 4.133 12 C -0.108 4.108 13 C -0.103 4.103 14 H 0.085 0.915 15 C -0.143 4.143 16 C 0.165 3.835 17 H 0.094 0.906 18 C -0.096 4.096 19 C 0.148 3.852 20 N -0.747 5.747 21 C -0.244 4.244 22 H 0.079 0.921 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.977 3.023 26 H -0.287 1.287 27 H -0.296 1.296 28 H -0.266 1.266 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.064 0.936 39 H 0.032 0.968 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.032 0.968 44 H 0.017 0.983 45 H 0.370 0.630 46 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.738 12.166 -14.167 27.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.062 4.062 3 N -0.132 5.132 4 N -0.270 5.270 5 S 0.642 5.358 6 C -0.444 4.444 7 C 0.378 3.622 8 O -0.412 6.412 9 N -0.321 5.321 10 C -0.030 4.030 11 C -0.171 4.171 12 C -0.146 4.146 13 C -0.122 4.122 14 H 0.103 0.897 15 C -0.201 4.201 16 C 0.062 3.938 17 H 0.112 0.888 18 C -0.134 4.134 19 C 0.021 3.979 20 N -0.389 5.389 21 C -0.376 4.376 22 H 0.096 0.904 23 C -0.272 4.272 24 N -0.623 5.623 25 Si 0.805 3.195 26 H -0.214 1.214 27 H -0.223 1.223 28 H -0.190 1.190 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.124 0.876 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.035 0.965 45 H 0.201 0.799 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 21.929 12.947 -13.815 28.972 hybrid contribution -2.484 -0.945 0.858 2.792 sum 19.446 12.001 -12.957 26.269 Atomic orbital electron populations 1.20416 0.83582 1.04657 1.04650 1.23026 1.00583 0.85105 0.97493 1.70649 0.97231 1.28335 1.17031 1.78558 1.09367 1.18181 1.20906 1.82187 1.06702 0.98298 1.48645 1.27823 1.00429 0.99494 1.16618 1.16831 0.81257 0.82566 0.81552 1.91027 1.33645 1.76755 1.39794 1.48112 1.39040 1.10728 1.34203 1.22310 0.90555 1.00752 0.89417 1.21967 1.02795 0.97057 0.95265 1.21554 0.97334 0.96252 0.99441 1.21583 0.96497 1.00812 0.93307 0.89651 1.21835 0.97409 0.99691 1.01130 1.21337 0.95934 0.80648 0.95875 0.88836 1.21920 0.97056 0.95443 0.99019 1.21019 0.87841 0.95396 0.93640 1.42619 1.30128 1.15110 1.51086 1.19685 1.05441 0.92980 1.19461 0.90355 1.25646 1.00390 1.01289 0.99887 1.69862 1.27801 1.33103 1.31567 0.85093 0.77285 0.79000 0.78112 1.21379 1.22261 1.19049 0.89196 0.87880 0.90438 0.87402 0.90543 0.92042 0.87556 0.90294 0.89883 0.91711 0.94915 0.92788 0.92754 0.92294 0.95055 0.96540 0.79942 0.94117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.58 10.17 71.24 0.72 -0.86 16 2 C 0.08 1.99 7.00 42.65 0.30 2.29 16 3 N -0.27 -6.51 11.54 -48.18 -0.56 -7.07 16 4 N -0.29 -6.29 12.51 37.02 0.46 -5.83 16 5 S 0.51 7.86 21.21 -56.49 -1.20 6.66 16 6 C -0.30 -6.74 5.57 24.62 0.14 -6.60 16 7 C 0.59 15.72 7.07 86.59 0.61 16.33 16 8 O -0.53 -19.31 12.60 -4.10 -0.05 -19.36 16 9 N -0.59 -12.20 2.42 -798.53 -1.94 -14.14 16 10 C 0.09 1.08 6.08 86.36 0.52 1.60 16 11 C -0.13 -1.34 5.74 30.67 0.18 -1.17 16 12 C -0.11 -1.31 5.43 30.62 0.17 -1.15 16 13 C -0.10 -2.09 2.19 -10.72 -0.02 -2.12 16 14 H 0.09 1.89 6.62 -2.39 -0.02 1.88 16 15 C -0.14 -3.42 8.05 71.98 0.58 -2.84 16 16 C 0.16 3.96 2.79 44.92 0.13 4.08 16 17 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 18 C -0.10 -3.44 2.73 30.59 0.08 -3.35 16 19 C 0.15 6.13 5.67 86.38 0.49 6.61 16 20 N -0.75 -40.75 5.60 -343.44 -1.92 -42.67 16 21 C -0.24 -14.19 9.99 84.04 0.84 -13.36 16 22 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 23 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 24 N -0.97 -62.49 13.06 21.65 0.28 -62.21 16 25 Si 0.98 47.39 29.55 68.60 2.03 49.42 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 27 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 28 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 29 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.08 1.81 7.90 -2.39 -0.02 1.79 16 32 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.81 4.44 -7.99 -0.04 0.78 16 34 H 0.06 0.80 6.34 -2.39 -0.02 0.78 16 35 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 38 H 0.06 1.34 8.14 -2.38 -0.02 1.33 16 39 H 0.03 1.02 5.98 -2.38 -0.01 1.01 16 40 H 0.05 1.22 5.97 -2.39 -0.01 1.21 16 41 H 0.05 2.23 6.70 -2.39 -0.02 2.21 16 42 H 0.06 2.37 5.42 -2.39 -0.01 2.35 16 43 H 0.03 1.25 5.78 -2.39 -0.01 1.23 16 44 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.37 22.10 7.67 -92.71 -0.71 21.39 16 46 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -76.43 366.03 2.59 -73.84 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: 0.28 Total: 26.19 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 5.20 Total: -4.83 kcal Atomic # 7 Polarization: -128.24 SS G_CDS: -3.67 Total: -131.91 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.36 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 2.03 Total: 49.42 kcal Atomic # 16 Polarization: 7.86 SS G_CDS: -1.20 Total: 6.66 kcal Total: -76.43 2.59 -73.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691289982.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.830 kcal (2) G-P(sol) polarization free energy of solvation -76.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds