Wall clock time and date at job start Tue Mar 31 2020 20:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.45633 * 2 1 4 4 N 1.46510 * 109.46749 * 60.03271 * 3 2 1 5 5 C 1.34772 * 119.99532 * 179.97438 * 4 3 2 6 6 O 1.21587 * 120.00297 * 359.97438 * 5 4 3 7 7 C 1.47569 * 119.99694 * 179.97438 * 5 4 3 8 8 C 1.39735 * 120.14504 * 0.25203 * 7 5 4 9 9 C 1.37730 * 119.90729 * 180.27652 * 8 7 5 10 10 C 1.38757 * 120.19295 * 359.74475 * 9 8 7 11 11 F 1.35103 * 119.86159 * 180.02562 * 10 9 8 12 12 C 1.38504 * 120.28397 * 359.97438 * 10 9 8 13 13 C 1.38190 * 120.09198 * 0.02562 * 12 10 9 14 14 F 1.35095 * 120.09456 * 179.97438 * 13 12 10 15 15 C 1.53041 * 109.44892 * 119.97114 * 2 1 3 16 16 C 1.53191 * 109.31437 * 58.64990 * 15 2 1 17 17 N 1.46919 * 108.77340 * 54.63531 * 16 15 2 18 18 C 1.36937 * 120.63013 * 126.41720 * 17 16 15 19 19 H 1.08000 * 119.99952 * 207.65659 * 18 17 16 20 20 C 1.38808 * 119.99990 * 27.65053 * 18 17 16 21 21 N 1.31611 * 120.00268 * 17.38242 * 20 18 17 22 22 Si 1.86800 * 120.00012 * 197.38099 * 20 18 17 23 23 H 1.48507 * 109.47164 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47346 * 119.99944 * 22 20 18 25 25 H 1.48506 * 109.47280 * 240.00140 * 22 20 18 26 26 C 1.46920 * 118.73945 * 306.38709 * 17 16 15 27 27 C 1.53044 * 109.45839 * 240.03119 * 2 1 3 28 28 H 1.09002 * 109.47305 * 60.00116 * 1 2 3 29 29 H 1.09007 * 109.46975 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47179 * 299.99111 * 1 2 3 31 31 H 1.09000 * 109.47441 * 300.02986 * 3 2 1 32 32 H 1.09001 * 109.46831 * 180.02562 * 3 2 1 33 33 H 0.96998 * 119.99880 * 359.97438 * 4 3 2 34 34 H 1.08008 * 120.04349 * 0.02562 * 8 7 5 35 35 H 1.07999 * 119.90408 * 179.72587 * 9 8 7 36 36 H 1.07994 * 119.94971 * 180.02562 * 12 10 9 37 37 H 1.09004 * 109.49280 * 178.60599 * 15 2 1 38 38 H 1.09000 * 109.49512 * 298.69622 * 15 2 1 39 39 H 1.09000 * 109.58137 * 294.84505 * 16 15 2 40 40 H 1.09002 * 109.58225 * 174.42028 * 16 15 2 41 41 H 0.97001 * 120.00586 * 179.97438 * 21 20 18 42 42 H 1.09002 * 109.58958 * 293.82151 * 26 17 16 43 43 H 1.09002 * 109.70553 * 173.47186 * 26 17 16 44 44 H 1.09002 * 109.49643 * 61.30577 * 27 2 1 45 45 H 1.08997 * 109.49483 * 181.40457 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5517 2.1329 1.1967 5 6 1.8775 3.4230 1.4103 6 8 2.5767 4.0140 0.6101 7 6 1.3856 4.1185 2.6153 8 6 0.5862 3.4406 3.5395 9 6 0.1250 4.0961 4.6596 10 6 0.4563 5.4261 4.8758 11 9 0.0007 6.0624 5.9771 12 6 1.2529 6.1039 3.9679 13 6 1.7221 5.4577 2.8401 14 9 2.4987 6.1190 1.9542 15 6 2.0396 -0.7209 1.2501 16 6 1.4991 -2.1542 1.2642 17 7 1.8621 -2.8089 0.0000 18 6 2.5255 -4.0069 0.0000 19 1 3.1671 -4.2688 -0.8283 20 6 2.3732 -4.8845 1.0646 21 7 1.3600 -4.7449 1.8929 22 14 3.6065 -6.2637 1.3218 23 1 4.6447 -6.2035 0.2616 24 1 4.2489 -6.1117 2.6521 25 1 2.9069 -7.5720 1.2565 26 6 1.4993 -2.1541 -1.2642 27 6 2.0399 -0.7208 -1.2501 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 1.6758 1.9566 -0.8897 32 1 3.1297 1.4429 -0.0005 33 1 0.9942 1.6612 1.8351 34 1 0.3270 2.4053 3.3735 35 1 -0.4965 3.5734 5.3716 36 1 1.5078 7.1389 4.1417 37 1 3.1294 -0.7430 1.2384 38 1 1.6955 -0.1935 2.1398 39 1 0.4142 -2.1345 1.3672 40 1 1.9376 -2.7019 2.0984 41 1 1.2534 -5.3583 2.6366 42 1 0.4144 -2.1346 -1.3675 43 1 1.9360 -2.7010 -2.0999 44 1 1.6959 -0.1934 -2.1399 45 1 3.1295 -0.7431 -1.2382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699864372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:25 Heat of formation + Delta-G solvation = -82.261324 kcal Electronic energy + Delta-G solvation = -29383.336570 eV Core-core repulsion = 25037.198061 eV Total energy + Delta-G solvation = -4346.138509 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.52064 -49.24477 -40.37856 -38.97909 -38.09764 -35.16075 -33.34350 -31.71837 -31.10267 -30.66198 -29.97524 -27.17287 -26.83444 -24.54441 -23.90965 -23.22826 -22.36244 -21.00690 -20.58888 -18.84307 -18.20641 -17.90482 -17.55998 -16.47893 -16.43604 -16.15365 -15.75414 -15.74694 -15.20203 -15.14494 -14.86714 -14.80860 -14.24548 -14.02921 -13.95437 -13.50969 -13.48624 -13.39247 -12.87292 -12.76775 -12.66396 -12.40911 -12.00273 -11.98414 -11.51993 -11.35203 -11.22938 -10.81757 -10.73635 -10.58632 -10.26340 -10.21707 -10.08213 -9.84506 -9.64891 -9.56620 -9.46234 -9.28995 -8.99784 -8.48190 -6.68984 -5.82419 -3.23505 0.09882 0.51081 2.38437 2.98056 3.24213 3.33698 3.34663 3.43275 3.45327 3.86746 4.02112 4.31100 4.35782 4.47319 4.61169 4.96584 5.11367 5.14537 5.20029 5.24304 5.37555 5.41340 5.45844 5.48265 5.51008 5.71423 5.79779 5.89841 6.02379 6.05309 6.09382 6.18003 6.26252 6.34772 6.42922 6.48836 6.55549 6.64956 6.73566 6.82661 6.96113 7.31292 7.38503 7.62031 7.77529 8.06265 8.41988 9.18790 9.82355 10.38541 11.26043 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.002541 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.977265 B =11016.711291 C =11931.868270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.065 4.065 3 C 0.130 3.870 4 N -0.713 5.713 5 C 0.554 3.446 6 O -0.528 6.528 7 C -0.181 4.181 8 C -0.027 4.027 9 C -0.170 4.170 10 C 0.155 3.845 11 F -0.126 7.126 12 C -0.205 4.205 13 C 0.190 3.810 14 F -0.105 7.105 15 C -0.130 4.130 16 C 0.171 3.829 17 N -0.591 5.591 18 C -0.250 4.250 19 H 0.065 0.935 20 C 0.002 3.998 21 N -0.903 5.903 22 Si 0.900 3.100 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.146 3.854 27 C -0.120 4.120 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.400 0.600 34 H 0.149 0.851 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.057 0.943 38 H 0.043 0.957 39 H 0.021 0.979 40 H 0.086 0.914 41 H 0.252 0.748 42 H 0.021 0.979 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.276 19.310 4.838 20.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.065 4.065 3 C 0.007 3.993 4 N -0.366 5.366 5 C 0.341 3.659 6 O -0.405 6.405 7 C -0.185 4.185 8 C -0.046 4.046 9 C -0.189 4.189 10 C 0.135 3.865 11 F -0.105 7.105 12 C -0.224 4.224 13 C 0.169 3.831 14 F -0.083 7.083 15 C -0.169 4.169 16 C 0.045 3.955 17 N -0.314 5.314 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.730 3.270 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.019 3.981 27 C -0.160 4.160 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.237 0.763 34 H 0.167 0.833 35 H 0.169 0.831 36 H 0.173 0.827 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.039 0.961 40 H 0.104 0.896 41 H 0.062 0.938 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.787 19.637 4.368 20.470 hybrid contribution 0.369 -0.668 0.687 1.026 sum -3.418 18.969 5.055 19.926 Atomic orbital electron populations 1.21950 0.94668 1.03098 1.00232 1.20717 0.95792 0.91929 0.98086 1.21610 0.99231 0.92255 0.86230 1.45986 1.53204 1.11178 1.26219 1.17836 0.80863 0.82155 0.85096 1.90851 1.37411 1.66053 1.46232 1.20223 1.05248 0.94008 0.99049 1.21131 0.92299 1.00025 0.91129 1.21171 1.04264 0.93182 1.00275 1.17514 0.94681 0.90724 0.83600 1.91564 1.86661 1.81876 1.50354 1.21025 1.03468 1.02817 0.95118 1.17256 0.89900 0.88874 0.87033 1.91638 1.70867 1.79758 1.66044 1.22264 1.00784 0.99603 0.94287 1.20793 0.96486 0.87757 0.90426 1.44032 1.66814 1.21091 0.99459 1.19232 1.19191 0.93442 1.06097 0.91693 1.25005 0.97155 0.97539 0.99974 1.70029 1.27949 1.38804 1.17999 0.86260 0.81097 0.81861 0.77781 1.20281 1.21599 1.21767 1.20910 0.96413 0.90604 0.90145 1.21997 1.00828 0.98166 0.94967 0.93296 0.90612 0.93827 0.91600 0.91379 0.76275 0.83320 0.83077 0.82716 0.92434 0.93822 0.96092 0.89606 0.93753 0.96144 0.92881 0.92869 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 7.54 37.16 0.28 -1.66 16 2 C -0.06 -0.95 0.53 -154.46 -0.08 -1.03 16 3 C 0.13 1.76 4.56 -4.04 -0.02 1.74 16 4 N -0.71 -8.56 4.90 -61.33 -0.30 -8.87 16 5 C 0.55 7.45 7.76 -12.46 -0.10 7.36 16 6 O -0.53 -9.09 15.34 5.29 0.08 -9.01 16 7 C -0.18 -1.94 5.88 -104.91 -0.62 -2.55 16 8 C -0.03 -0.21 9.53 -39.21 -0.37 -0.58 16 9 C -0.17 -1.16 10.01 -39.58 -0.40 -1.56 16 10 C 0.15 1.21 7.30 -39.29 -0.29 0.92 16 11 F -0.13 -1.03 17.26 2.25 0.04 -0.99 16 12 C -0.20 -1.70 9.99 -39.50 -0.39 -2.10 16 13 C 0.19 2.05 7.28 -38.97 -0.28 1.77 16 14 F -0.11 -1.38 15.55 2.25 0.04 -1.35 16 15 C -0.13 -2.19 4.75 -26.61 -0.13 -2.32 16 16 C 0.17 3.73 4.84 -3.71 -0.02 3.71 16 17 N -0.59 -13.93 2.99 -172.33 -0.52 -14.45 16 18 C -0.25 -6.63 9.59 -15.06 -0.14 -6.77 16 19 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 20 C 0.00 0.04 4.91 -17.44 -0.09 -0.04 16 21 N -0.90 -25.23 11.19 55.49 0.62 -24.61 16 22 Si 0.90 21.23 29.59 -169.99 -5.03 16.20 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C 0.15 2.85 6.04 -3.72 -0.02 2.83 16 27 C -0.12 -1.92 4.91 -26.61 -0.13 -2.05 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 1.22 4.98 -51.92 -0.26 0.97 16 30 H 0.04 0.50 6.86 -51.93 -0.36 0.15 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 33 H 0.40 3.99 4.18 -40.82 -0.17 3.82 16 34 H 0.15 0.84 6.40 -52.48 -0.34 0.50 16 35 H 0.15 0.70 8.06 -52.49 -0.42 0.27 16 36 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.04 0.63 6.82 -51.93 -0.35 0.27 16 39 H 0.02 0.47 6.69 -51.93 -0.35 0.13 16 40 H 0.09 2.16 6.04 -51.93 -0.31 1.85 16 41 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.02 0.40 6.69 -51.93 -0.35 0.06 16 43 H 0.05 1.04 7.94 -51.93 -0.41 0.63 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -30.93 361.33 -8.25 -39.17 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -5.83 Total: 0.79 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -2.80 Total: -2.34 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.20 Total: -47.93 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.07 Total: -2.34 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.93 -8.25 -39.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699864372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.087 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds