Wall clock time and date at job start Tue Mar 31 2020 20:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.45633 * 2 1 4 4 N 1.46510 * 109.46749 * 60.03271 * 3 2 1 5 5 C 1.34772 * 119.99532 * 179.97438 * 4 3 2 6 6 O 1.21587 * 120.00297 * 359.97438 * 5 4 3 7 7 C 1.47569 * 119.99694 * 179.97438 * 5 4 3 8 8 C 1.39735 * 120.14504 * 0.25203 * 7 5 4 9 9 C 1.37730 * 119.90729 * 180.27652 * 8 7 5 10 10 C 1.38757 * 120.19295 * 359.74475 * 9 8 7 11 11 F 1.35103 * 119.86159 * 180.02562 * 10 9 8 12 12 C 1.38504 * 120.28397 * 359.97438 * 10 9 8 13 13 C 1.38190 * 120.09198 * 0.02562 * 12 10 9 14 14 F 1.35095 * 120.09456 * 179.97438 * 13 12 10 15 15 C 1.53041 * 109.44892 * 119.97114 * 2 1 3 16 16 C 1.53191 * 109.31437 * 58.64990 * 15 2 1 17 17 N 1.46919 * 108.77340 * 54.63531 * 16 15 2 18 18 C 1.36937 * 120.63013 * 126.41720 * 17 16 15 19 19 H 1.08000 * 119.99952 * 207.65659 * 18 17 16 20 20 C 1.38808 * 119.99990 * 27.65053 * 18 17 16 21 21 N 1.31611 * 120.00268 * 17.38242 * 20 18 17 22 22 Si 1.86800 * 120.00012 * 197.38099 * 20 18 17 23 23 H 1.48507 * 109.47164 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47346 * 119.99944 * 22 20 18 25 25 H 1.48506 * 109.47280 * 240.00140 * 22 20 18 26 26 C 1.46920 * 118.73945 * 306.38709 * 17 16 15 27 27 C 1.53044 * 109.45839 * 240.03119 * 2 1 3 28 28 H 1.09002 * 109.47305 * 60.00116 * 1 2 3 29 29 H 1.09007 * 109.46975 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47179 * 299.99111 * 1 2 3 31 31 H 1.09000 * 109.47441 * 300.02986 * 3 2 1 32 32 H 1.09001 * 109.46831 * 180.02562 * 3 2 1 33 33 H 0.96998 * 119.99880 * 359.97438 * 4 3 2 34 34 H 1.08008 * 120.04349 * 0.02562 * 8 7 5 35 35 H 1.07999 * 119.90408 * 179.72587 * 9 8 7 36 36 H 1.07994 * 119.94971 * 180.02562 * 12 10 9 37 37 H 1.09004 * 109.49280 * 178.60599 * 15 2 1 38 38 H 1.09000 * 109.49512 * 298.69622 * 15 2 1 39 39 H 1.09000 * 109.58137 * 294.84505 * 16 15 2 40 40 H 1.09002 * 109.58225 * 174.42028 * 16 15 2 41 41 H 0.97001 * 120.00586 * 179.97438 * 21 20 18 42 42 H 1.09002 * 109.58958 * 293.82151 * 26 17 16 43 43 H 1.09002 * 109.70553 * 173.47186 * 26 17 16 44 44 H 1.09002 * 109.49643 * 61.30577 * 27 2 1 45 45 H 1.08997 * 109.49483 * 181.40457 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0397 1.4426 0.0000 4 7 1.5517 2.1329 1.1967 5 6 1.8775 3.4230 1.4103 6 8 2.5767 4.0140 0.6101 7 6 1.3856 4.1185 2.6153 8 6 0.5862 3.4406 3.5395 9 6 0.1250 4.0961 4.6596 10 6 0.4563 5.4261 4.8758 11 9 0.0007 6.0624 5.9771 12 6 1.2529 6.1039 3.9679 13 6 1.7221 5.4577 2.8401 14 9 2.4987 6.1190 1.9542 15 6 2.0396 -0.7209 1.2501 16 6 1.4991 -2.1542 1.2642 17 7 1.8621 -2.8089 0.0000 18 6 2.5255 -4.0069 0.0000 19 1 3.1671 -4.2688 -0.8283 20 6 2.3732 -4.8845 1.0646 21 7 1.3600 -4.7449 1.8929 22 14 3.6065 -6.2637 1.3218 23 1 4.6447 -6.2035 0.2616 24 1 4.2489 -6.1117 2.6521 25 1 2.9069 -7.5720 1.2565 26 6 1.4993 -2.1541 -1.2642 27 6 2.0399 -0.7208 -1.2501 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 1.6758 1.9566 -0.8897 32 1 3.1297 1.4429 -0.0005 33 1 0.9942 1.6612 1.8351 34 1 0.3270 2.4053 3.3735 35 1 -0.4965 3.5734 5.3716 36 1 1.5078 7.1389 4.1417 37 1 3.1294 -0.7430 1.2384 38 1 1.6955 -0.1935 2.1398 39 1 0.4142 -2.1345 1.3672 40 1 1.9376 -2.7019 2.0984 41 1 1.2534 -5.3583 2.6366 42 1 0.4144 -2.1346 -1.3675 43 1 1.9360 -2.7010 -2.0999 44 1 1.6959 -0.1934 -2.1399 45 1 3.1295 -0.7431 -1.2382 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699864372.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:24 Heat of formation + Delta-G solvation = -99.728404 kcal Electronic energy + Delta-G solvation = -29384.093999 eV Core-core repulsion = 25037.198061 eV Total energy + Delta-G solvation = -4346.895938 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.14508 -50.09446 -41.38227 -40.12225 -39.08137 -36.62582 -34.78197 -32.94825 -32.06203 -31.64902 -31.54454 -28.67622 -27.95929 -25.97211 -24.88330 -24.09014 -23.81276 -22.44607 -21.67332 -19.75813 -19.47294 -18.90032 -18.36982 -18.07337 -17.20867 -16.96366 -16.82432 -16.63076 -16.53133 -16.23882 -16.04389 -15.62877 -15.53527 -15.45554 -15.00522 -14.95409 -14.84244 -14.44114 -14.18666 -13.99397 -13.53523 -13.49136 -13.17014 -13.01586 -12.92923 -12.65391 -12.58714 -12.56055 -12.30959 -12.20958 -11.86891 -11.77524 -11.44809 -11.26050 -11.03697 -10.99146 -10.47144 -10.32868 -10.17348 -9.85358 -8.60308 -7.84504 -5.27204 -0.61883 -0.11642 1.45675 1.48955 1.57012 1.58084 2.01880 2.43272 2.53033 2.67062 3.18818 3.29344 3.41968 3.52199 3.74703 3.77018 3.82069 3.88723 3.95527 4.00471 4.43024 4.52498 4.55058 4.59252 4.64499 4.73844 4.75320 4.81418 4.86721 4.88448 4.89224 4.90031 4.98838 5.10837 5.15801 5.27271 5.34177 5.38367 5.43625 5.53477 5.55230 5.59212 5.70333 5.89502 6.41758 6.43841 7.08606 7.20387 7.93144 8.42611 9.21073 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016653 B = 0.002541 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.977265 B =11016.711291 C =11931.868270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.054 4.054 3 C 0.141 3.859 4 N -0.703 5.703 5 C 0.554 3.446 6 O -0.573 6.573 7 C -0.196 4.196 8 C -0.018 4.018 9 C -0.156 4.156 10 C 0.156 3.844 11 F -0.126 7.126 12 C -0.199 4.199 13 C 0.166 3.834 14 F -0.127 7.127 15 C -0.118 4.118 16 C 0.179 3.821 17 N -0.610 5.610 18 C -0.260 4.260 19 H 0.060 0.940 20 C -0.048 4.048 21 N -0.930 5.930 22 Si 0.959 3.041 23 H -0.272 1.272 24 H -0.290 1.290 25 H -0.293 1.293 26 C 0.143 3.857 27 C -0.113 4.113 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.412 0.588 34 H 0.174 0.826 35 H 0.181 0.819 36 H 0.169 0.831 37 H 0.041 0.959 38 H 0.073 0.927 39 H 0.011 0.989 40 H 0.047 0.953 41 H 0.249 0.751 42 H 0.024 0.976 43 H 0.046 0.954 44 H 0.081 0.919 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.248 20.384 5.718 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.055 4.055 3 C 0.017 3.983 4 N -0.356 5.356 5 C 0.342 3.658 6 O -0.454 6.454 7 C -0.200 4.200 8 C -0.036 4.036 9 C -0.175 4.175 10 C 0.136 3.864 11 F -0.104 7.104 12 C -0.218 4.218 13 C 0.145 3.855 14 F -0.105 7.105 15 C -0.157 4.157 16 C 0.053 3.947 17 N -0.334 5.334 18 C -0.390 4.390 19 H 0.078 0.922 20 C -0.243 4.243 21 N -0.576 5.576 22 Si 0.788 3.212 23 H -0.196 1.196 24 H -0.217 1.217 25 H -0.220 1.220 26 C 0.017 3.983 27 C -0.152 4.152 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.251 0.749 34 H 0.191 0.809 35 H 0.199 0.801 36 H 0.187 0.813 37 H 0.060 0.940 38 H 0.091 0.909 39 H 0.029 0.971 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.042 0.958 43 H 0.064 0.936 44 H 0.100 0.900 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.775 20.716 5.248 21.897 hybrid contribution 0.612 -0.990 0.433 1.242 sum -4.163 19.725 5.681 20.945 Atomic orbital electron populations 1.21892 0.93313 1.01925 1.02354 1.20577 0.96687 0.92120 0.96092 1.21362 0.98464 0.91273 0.87197 1.45843 1.52956 1.10858 1.25925 1.18218 0.80026 0.82161 0.85388 1.90828 1.39527 1.67036 1.47985 1.20122 1.06876 0.94086 0.98942 1.21364 0.91010 1.00893 0.90380 1.21489 1.03314 0.92615 1.00059 1.17626 0.94299 0.91165 0.83295 1.91573 1.86573 1.81993 1.50289 1.21124 1.02950 1.03516 0.94255 1.17536 0.90861 0.89318 0.87746 1.91580 1.71731 1.80218 1.66975 1.22073 0.99623 0.97006 0.96978 1.20612 0.95625 0.89882 0.88568 1.44299 1.66937 1.20806 1.01338 1.19494 1.19098 0.94541 1.05882 0.92215 1.25651 0.98706 0.99817 1.00140 1.70154 1.29334 1.39683 1.18419 0.85337 0.79194 0.79185 0.77498 1.19613 1.21709 1.21995 1.21038 0.96644 0.92349 0.88251 1.21886 1.00123 0.96138 0.97054 0.91636 0.93302 0.91400 0.91024 0.92672 0.74891 0.80917 0.80142 0.81300 0.93995 0.90856 0.97105 0.93418 0.94181 0.95829 0.93575 0.90028 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.37 7.54 71.98 0.54 -2.83 16 2 C -0.05 -1.48 0.53 -52.15 -0.03 -1.50 16 3 C 0.14 3.51 4.56 86.38 0.39 3.91 16 4 N -0.70 -15.17 4.90 -466.22 -2.28 -17.46 16 5 C 0.55 14.18 7.76 86.71 0.67 14.85 16 6 O -0.57 -19.68 15.34 -3.99 -0.06 -19.74 16 7 C -0.20 -3.86 5.88 -20.05 -0.12 -3.98 16 8 C -0.02 -0.22 9.53 22.51 0.21 0.00 16 9 C -0.16 -1.54 10.01 22.27 0.22 -1.31 16 10 C 0.16 2.00 7.30 22.46 0.16 2.16 16 11 F -0.13 -1.70 17.26 44.97 0.78 -0.92 16 12 C -0.20 -2.98 9.99 22.32 0.22 -2.76 16 13 C 0.17 3.45 7.28 22.66 0.17 3.62 16 14 F -0.13 -3.39 15.55 44.97 0.70 -2.70 16 15 C -0.12 -3.83 4.75 30.67 0.15 -3.69 16 16 C 0.18 7.83 4.84 86.36 0.42 8.25 16 17 N -0.61 -29.08 2.99 -699.13 -2.09 -31.17 16 18 C -0.26 -13.99 9.59 84.03 0.81 -13.19 16 19 H 0.06 3.20 7.89 -2.91 -0.02 3.18 16 20 C -0.05 -2.60 4.91 84.86 0.42 -2.18 16 21 N -0.93 -52.99 11.19 21.65 0.24 -52.74 16 22 Si 0.96 44.27 29.59 68.60 2.03 46.30 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 C 0.14 5.53 6.04 86.36 0.52 6.05 16 27 C -0.11 -3.44 4.91 30.67 0.15 -3.29 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.49 4.98 -2.38 -0.01 1.48 16 30 H 0.07 1.32 6.86 -2.39 -0.02 1.30 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.41 6.75 4.18 -92.71 -0.39 6.37 16 34 H 0.17 1.17 6.40 -2.91 -0.02 1.15 16 35 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16 36 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.07 1.93 6.82 -2.39 -0.02 1.91 16 39 H 0.01 0.50 6.69 -2.39 -0.02 0.48 16 40 H 0.05 2.45 6.04 -2.39 -0.01 2.44 16 41 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 42 H 0.02 0.91 6.69 -2.39 -0.02 0.90 16 43 H 0.05 1.81 7.94 -2.39 -0.02 1.79 16 44 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -69.56 361.33 4.87 -64.69 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.65 Total: 9.63 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 4.91 Total: 4.12 kcal Atomic # 7 Polarization: -97.24 SS G_CDS: -4.13 Total: -101.37 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.06 Total: -19.74 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 1.48 Total: -3.62 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -69.56 4.87 -64.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699864372.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.034 kcal (2) G-P(sol) polarization free energy of solvation -69.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds