Wall clock time and date at job start Tue Mar 31 2020 21:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38597 * 120.80096 * 2 1 4 4 N 1.32340 * 119.10547 * 179.97438 * 3 2 1 5 5 C 1.31790 * 120.81586 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.12173 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47010 * 90.00354 * 6 5 4 8 8 C 1.46898 * 110.99934 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47390 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.46881 * 54.99442 * 9 8 7 11 11 C 1.53004 * 109.47024 * 295.00117 * 9 8 7 12 12 C 1.52997 * 109.47504 * 174.99803 * 9 8 7 13 13 N 1.46505 * 109.47212 * 184.99959 * 12 9 8 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 9 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47156 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00151 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99845 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00054 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00100 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99948 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47203 * 90.00024 * 22 20 18 24 24 H 1.48506 * 109.46989 * 210.00023 * 22 20 18 25 25 H 1.48506 * 109.47313 * 329.99924 * 22 20 18 26 26 N 1.31795 * 121.75926 * 0.27772 * 5 4 3 27 27 C 1.32341 * 120.81245 * 359.44336 * 26 5 4 28 28 H 1.09008 * 109.46932 * 90.00092 * 1 2 3 29 29 H 1.09000 * 109.47514 * 210.00577 * 1 2 3 30 30 H 1.09005 * 109.47039 * 330.00507 * 1 2 3 31 31 H 1.07996 * 120.45146 * 359.94860 * 3 2 1 32 32 H 1.08999 * 109.47103 * 330.00168 * 6 5 4 33 33 H 1.09001 * 109.47094 * 210.00157 * 6 5 4 34 34 H 1.00893 * 111.00632 * 56.04114 * 7 6 5 35 35 H 1.09003 * 109.47230 * 59.99766 * 8 7 6 36 36 H 1.08998 * 109.46947 * 299.99824 * 8 7 6 37 37 H 1.09000 * 109.47403 * 59.99547 * 11 9 8 38 38 H 1.09001 * 109.46917 * 180.02562 * 11 9 8 39 39 H 1.09004 * 109.46741 * 299.99412 * 11 9 8 40 40 H 1.09002 * 109.47153 * 64.99951 * 12 9 8 41 41 H 1.09001 * 109.46832 * 305.00142 * 12 9 8 42 42 H 0.96996 * 119.99606 * 0.02562 * 13 12 9 43 43 H 1.09001 * 109.47380 * 300.00190 * 16 14 13 44 44 H 1.09002 * 109.47060 * 60.00278 * 16 14 13 45 45 H 0.96999 * 120.00126 * 180.02562 * 21 20 18 46 46 H 1.07998 * 120.44693 * 180.26103 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2166 1.1905 0.0000 4 7 3.5395 1.1513 0.0005 5 6 4.1808 0.0000 0.0015 6 6 5.6879 0.0000 0.0015 7 7 6.1775 0.0011 1.3865 8 6 7.6460 0.0017 1.4256 9 6 8.1174 0.0035 2.8812 10 1 7.6688 -0.8378 3.4094 11 6 7.6940 1.3115 3.5527 12 6 9.6416 -0.1216 2.9238 13 7 10.0832 -0.2399 4.3158 14 6 11.3952 -0.3628 4.5983 15 8 12.2104 -0.3749 3.7005 16 6 11.8494 -0.4839 6.0301 17 16 13.6527 -0.6321 6.0806 18 6 13.9010 -0.7556 7.8206 19 1 13.0542 -0.7269 8.4903 20 6 15.1850 -0.8888 8.3307 21 7 16.2172 -0.9223 7.5146 22 14 15.4482 -1.0190 10.1754 23 1 15.4062 -2.4467 10.5819 24 1 16.7704 -0.4424 10.5286 25 1 14.3774 -0.2714 10.8823 26 7 3.5395 -1.1514 -0.0034 27 6 2.2166 -1.1905 0.0015 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.6972 2.1373 -0.0008 32 1 6.0512 0.8895 -0.5131 33 1 6.0512 -0.8905 -0.5116 34 1 5.8020 -0.7797 1.9035 35 1 8.0226 0.8915 0.9210 36 1 8.0232 -0.8885 0.9223 37 1 6.6081 1.4007 3.5224 38 1 8.0303 1.3130 4.5896 39 1 8.1426 2.1529 3.0245 40 1 10.0916 0.7634 2.4739 41 1 9.9491 -1.0077 2.3685 42 1 9.4311 -0.2306 5.0338 43 1 11.5424 0.4027 6.5850 44 1 11.3991 -1.3684 6.4806 45 1 17.1145 -1.0157 7.8710 46 1 1.6971 -2.1373 0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715226154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:07 Heat of formation + Delta-G solvation = -2.818570 kcal Electronic energy + Delta-G solvation = -24757.079907 eV Core-core repulsion = 21000.519432 eV Total energy + Delta-G solvation = -3756.560475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.57743 -39.29014 -37.68625 -35.57579 -34.19067 -34.11123 -32.42286 -32.36732 -29.53471 -28.85099 -26.69104 -25.83410 -25.38304 -25.16852 -23.78216 -22.28616 -20.66658 -20.22163 -18.27667 -17.84395 -17.37872 -16.36230 -16.22100 -15.95432 -15.65811 -15.25925 -15.00650 -14.78697 -14.72318 -14.60507 -14.22263 -13.97202 -13.85696 -13.51622 -13.18820 -13.10429 -13.05989 -12.70377 -12.64196 -12.53282 -12.41127 -11.79818 -11.44045 -11.30490 -11.21008 -11.12503 -11.04327 -11.00392 -10.97629 -10.73584 -9.79643 -9.76944 -9.67832 -9.35923 -9.04870 -8.87033 -8.81026 -8.20724 -6.47311 -6.19505 -3.89822 0.32273 0.60087 3.00587 3.14235 3.15321 3.23960 3.29843 3.34342 3.39927 3.66282 3.74281 4.03365 4.06794 4.22608 4.22664 4.26043 4.56782 4.69368 4.72720 4.79048 4.91410 4.92708 5.06755 5.15632 5.15967 5.20133 5.27350 5.32755 5.37277 5.40145 5.46309 5.62597 5.71881 5.82993 5.84965 5.88808 5.93489 6.07664 6.17404 6.19827 6.44315 6.50605 6.68621 6.88368 7.61708 7.62422 7.76439 8.37420 8.66762 9.25813 10.87968 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033814 B = 0.001375 C = 0.001350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.853628 B =20352.733889 C =20731.052835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.195 4.195 3 C 0.147 3.853 4 N -0.496 5.496 5 C 0.316 3.684 6 C 0.128 3.872 7 N -0.678 5.678 8 C 0.068 3.932 9 C -0.099 4.099 10 H 0.075 0.925 11 C -0.139 4.139 12 C 0.126 3.874 13 N -0.737 5.737 14 C 0.531 3.469 15 O -0.519 6.519 16 C -0.153 4.153 17 S -0.061 6.061 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.868 5.868 22 Si 0.918 3.082 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 N -0.513 5.513 27 C 0.147 3.853 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.168 0.832 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.344 0.656 35 H 0.081 0.919 36 H 0.039 0.961 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.398 0.602 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.033 2.083 -15.853 37.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.200 4.200 3 C -0.019 4.019 4 N -0.209 5.209 5 C 0.048 3.952 6 C -0.003 4.003 7 N -0.310 5.310 8 C -0.062 4.062 9 C -0.118 4.118 10 H 0.094 0.906 11 C -0.197 4.197 12 C 0.002 3.998 13 N -0.392 5.392 14 C 0.317 3.683 15 O -0.393 6.393 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 N -0.226 5.226 27 C -0.020 4.020 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.185 0.815 32 H 0.118 0.882 33 H 0.078 0.922 34 H 0.162 0.838 35 H 0.100 0.900 36 H 0.057 0.943 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.232 0.768 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -31.481 2.744 -17.336 36.044 hybrid contribution -1.969 -1.017 2.312 3.203 sum -33.450 1.727 -15.024 36.710 Atomic orbital electron populations 1.20666 0.89038 1.03677 1.02965 1.21761 0.99257 0.95720 1.03213 1.23233 0.89599 0.98295 0.90823 1.68267 1.09734 1.30463 1.12409 1.23019 0.97526 0.83411 0.91231 1.20583 0.85326 1.02929 0.91414 1.60371 1.08506 1.50385 1.11689 1.21929 0.86387 1.01560 0.96289 1.21335 0.94597 0.99858 0.96053 0.90647 1.21751 1.02107 0.96053 0.99777 1.21248 0.92806 1.02163 0.83618 1.45978 1.07861 1.77098 1.08225 1.20292 0.81572 0.75274 0.91159 1.90699 1.52514 1.47973 1.48127 1.23532 1.07084 1.04828 0.94968 1.85393 0.92637 1.95668 1.09702 1.22876 0.95537 1.58232 0.91734 0.90943 1.24984 0.94926 0.94583 0.99050 1.70020 0.98862 1.46618 1.34819 0.86174 0.77769 0.78439 0.83147 1.20285 1.20748 1.19703 1.68252 1.10150 1.30656 1.13580 1.23162 0.89462 0.98314 0.91022 0.90526 0.90833 0.90793 0.81500 0.88219 0.92247 0.83847 0.90046 0.94324 0.91494 0.93005 0.92563 0.91428 0.91750 0.76831 0.89242 0.89283 0.92200 0.81548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.20 10.06 36.00 0.36 0.16 16 2 C -0.20 -0.99 5.91 -104.36 -0.62 -1.61 16 3 C 0.15 0.94 11.01 -17.20 -0.19 0.75 16 4 N -0.50 -4.53 10.33 -10.72 -0.11 -4.64 16 5 C 0.32 2.85 7.15 -157.20 -1.12 1.73 16 6 C 0.13 1.01 6.12 -4.97 -0.03 0.98 16 7 N -0.68 -5.36 5.94 -115.06 -0.68 -6.04 16 8 C 0.07 0.52 5.07 -3.83 -0.02 0.50 16 9 C -0.10 -0.84 2.57 -90.62 -0.23 -1.07 16 10 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 11 C -0.14 -1.22 8.95 37.16 0.33 -0.89 16 12 C 0.13 1.47 5.06 -4.04 -0.02 1.45 16 13 N -0.74 -9.99 5.28 -60.29 -0.32 -10.30 16 14 C 0.53 10.10 7.85 -10.99 -0.09 10.01 16 15 O -0.52 -12.01 15.86 5.56 0.09 -11.92 16 16 C -0.15 -3.15 6.16 36.01 0.22 -2.92 16 17 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 18 C -0.54 -15.42 9.50 30.94 0.29 -15.12 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 21 N -0.87 -26.38 13.22 55.49 0.73 -25.65 16 22 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 26 N -0.51 -4.45 10.34 -10.72 -0.11 -4.57 16 27 C 0.15 0.91 11.01 -17.20 -0.19 0.72 16 28 H 0.08 0.10 8.14 -51.92 -0.42 -0.33 16 29 H 0.07 0.08 8.10 -51.93 -0.42 -0.34 16 30 H 0.07 0.09 8.10 -51.93 -0.42 -0.33 16 31 H 0.17 0.59 8.06 -52.49 -0.42 0.16 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.34 2.71 8.72 -39.30 -0.34 2.36 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.07 0.60 7.75 -51.93 -0.40 0.20 16 38 H 0.05 0.45 7.18 -51.93 -0.37 0.08 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.40 4.30 7.65 -40.82 -0.31 3.99 16 43 H 0.09 1.70 8.14 -51.91 -0.42 1.27 16 44 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 45 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 46 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 LS Contribution 403.66 15.07 6.08 6.08 Total: -1.00 -36.54 403.66 -10.26 -46.80 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.31 Total: 0.88 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.40 Total: -3.30 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.49 Total: -51.20 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.92 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.54 -10.26 -46.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715226154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.978 kcal (2) G-P(sol) polarization free energy of solvation -36.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds