Wall clock time and date at job start Tue Mar 31 2020 21:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38597 * 120.80096 * 2 1 4 4 N 1.32340 * 119.10547 * 179.97438 * 3 2 1 5 5 C 1.31790 * 120.81586 * 359.97438 * 4 3 2 6 6 C 1.50706 * 119.12173 * 179.97438 * 5 4 3 7 7 N 1.46898 * 109.47010 * 90.00354 * 6 5 4 8 8 C 1.46898 * 110.99934 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47390 * 179.97438 * 8 7 6 10 10 H 1.09004 * 109.46881 * 54.99442 * 9 8 7 11 11 C 1.53004 * 109.47024 * 295.00117 * 9 8 7 12 12 C 1.52997 * 109.47504 * 174.99803 * 9 8 7 13 13 N 1.46505 * 109.47212 * 184.99959 * 12 9 8 14 14 C 1.34771 * 119.99622 * 179.97438 * 13 12 9 15 15 O 1.21280 * 120.00597 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99622 * 179.97438 * 14 13 12 17 17 S 1.81002 * 109.47156 * 180.02562 * 16 14 13 18 18 C 1.76204 * 100.00151 * 180.02562 * 17 16 14 19 19 H 1.08000 * 119.99845 * 359.97438 * 18 17 16 20 20 C 1.38796 * 120.00054 * 180.02562 * 18 17 16 21 21 N 1.31631 * 120.00100 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99948 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47203 * 90.00024 * 22 20 18 24 24 H 1.48506 * 109.46989 * 210.00023 * 22 20 18 25 25 H 1.48506 * 109.47313 * 329.99924 * 22 20 18 26 26 N 1.31795 * 121.75926 * 0.27772 * 5 4 3 27 27 C 1.32341 * 120.81245 * 359.44336 * 26 5 4 28 28 H 1.09008 * 109.46932 * 90.00092 * 1 2 3 29 29 H 1.09000 * 109.47514 * 210.00577 * 1 2 3 30 30 H 1.09005 * 109.47039 * 330.00507 * 1 2 3 31 31 H 1.07996 * 120.45146 * 359.94860 * 3 2 1 32 32 H 1.08999 * 109.47103 * 330.00168 * 6 5 4 33 33 H 1.09001 * 109.47094 * 210.00157 * 6 5 4 34 34 H 1.00893 * 111.00632 * 56.04114 * 7 6 5 35 35 H 1.09003 * 109.47230 * 59.99766 * 8 7 6 36 36 H 1.08998 * 109.46947 * 299.99824 * 8 7 6 37 37 H 1.09000 * 109.47403 * 59.99547 * 11 9 8 38 38 H 1.09001 * 109.46917 * 180.02562 * 11 9 8 39 39 H 1.09004 * 109.46741 * 299.99412 * 11 9 8 40 40 H 1.09002 * 109.47153 * 64.99951 * 12 9 8 41 41 H 1.09001 * 109.46832 * 305.00142 * 12 9 8 42 42 H 0.96996 * 119.99606 * 0.02562 * 13 12 9 43 43 H 1.09001 * 109.47380 * 300.00190 * 16 14 13 44 44 H 1.09002 * 109.47060 * 60.00278 * 16 14 13 45 45 H 0.96999 * 120.00126 * 180.02562 * 21 20 18 46 46 H 1.07998 * 120.44693 * 180.26103 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2166 1.1905 0.0000 4 7 3.5395 1.1513 0.0005 5 6 4.1808 0.0000 0.0015 6 6 5.6879 0.0000 0.0015 7 7 6.1775 0.0011 1.3865 8 6 7.6460 0.0017 1.4256 9 6 8.1174 0.0035 2.8812 10 1 7.6688 -0.8378 3.4094 11 6 7.6940 1.3115 3.5527 12 6 9.6416 -0.1216 2.9238 13 7 10.0832 -0.2399 4.3158 14 6 11.3952 -0.3628 4.5983 15 8 12.2104 -0.3749 3.7005 16 6 11.8494 -0.4839 6.0301 17 16 13.6527 -0.6321 6.0806 18 6 13.9010 -0.7556 7.8206 19 1 13.0542 -0.7269 8.4903 20 6 15.1850 -0.8888 8.3307 21 7 16.2172 -0.9223 7.5146 22 14 15.4482 -1.0190 10.1754 23 1 15.4062 -2.4467 10.5819 24 1 16.7704 -0.4424 10.5286 25 1 14.3774 -0.2714 10.8823 26 7 3.5395 -1.1514 -0.0034 27 6 2.2166 -1.1905 0.0015 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8901 0.5138 31 1 1.6972 2.1373 -0.0008 32 1 6.0512 0.8895 -0.5131 33 1 6.0512 -0.8905 -0.5116 34 1 5.8020 -0.7797 1.9035 35 1 8.0226 0.8915 0.9210 36 1 8.0232 -0.8885 0.9223 37 1 6.6081 1.4007 3.5224 38 1 8.0303 1.3130 4.5896 39 1 8.1426 2.1529 3.0245 40 1 10.0916 0.7634 2.4739 41 1 9.9491 -1.0077 2.3685 42 1 9.4311 -0.2306 5.0338 43 1 11.5424 0.4027 6.5850 44 1 11.3991 -1.3684 6.4806 45 1 17.1145 -1.0157 7.8710 46 1 1.6971 -2.1373 0.0017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715226154.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:07 Heat of formation + Delta-G solvation = -29.681992 kcal Electronic energy + Delta-G solvation = -24758.244792 eV Core-core repulsion = 21000.519432 eV Total energy + Delta-G solvation = -3757.725360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.06684 -40.68217 -38.52620 -36.42282 -34.79344 -34.70744 -34.57727 -33.33442 -30.90239 -29.47486 -27.75688 -27.37630 -26.41427 -25.63721 -24.49621 -22.78431 -21.77916 -21.34407 -19.80788 -18.78195 -18.02875 -17.64824 -17.40757 -16.87459 -16.80341 -16.47958 -16.27028 -15.92529 -15.51571 -15.32117 -15.25717 -14.91527 -14.65025 -14.49819 -14.39245 -13.98343 -13.81907 -13.57830 -13.40500 -13.22065 -13.16073 -13.12600 -13.03585 -12.88032 -12.61317 -12.05993 -12.01924 -11.86329 -11.77878 -11.73099 -11.68913 -11.13679 -10.95120 -10.27009 -10.19996 -10.18063 -10.09552 -9.46960 -8.66093 -8.34041 -6.12220 -0.15331 0.12740 1.27694 1.43037 1.47705 1.58271 1.62870 2.25303 2.29411 2.61032 2.89145 3.00177 3.21285 3.32277 3.38087 3.68809 3.85007 3.87608 3.92773 3.94461 4.03987 4.09047 4.22353 4.30801 4.40271 4.50331 4.51901 4.60264 4.64785 4.73829 4.78510 4.82816 4.83530 4.95681 5.07824 5.11197 5.16319 5.26864 5.42358 5.43085 5.48544 5.50861 5.85049 6.01211 6.20458 6.27411 6.51901 7.07262 7.10650 7.25811 8.75291 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.033814 B = 0.001375 C = 0.001350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.853628 B =20352.733889 C =20731.052835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.184 4.184 3 C 0.131 3.869 4 N -0.523 5.523 5 C 0.296 3.704 6 C 0.132 3.868 7 N -0.678 5.678 8 C 0.072 3.928 9 C -0.084 4.084 10 H 0.088 0.912 11 C -0.135 4.135 12 C 0.126 3.874 13 N -0.710 5.710 14 C 0.533 3.467 15 O -0.567 6.567 16 C -0.130 4.130 17 S -0.152 6.152 18 C -0.547 4.547 19 H 0.083 0.917 20 C 0.014 3.986 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.258 1.258 26 N -0.534 5.534 27 C 0.133 3.867 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.191 0.809 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.344 0.656 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.415 0.585 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.271 0.729 46 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.181 1.953 -14.581 39.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.188 4.188 3 C -0.034 4.034 4 N -0.237 5.237 5 C 0.029 3.971 6 C 0.001 3.999 7 N -0.310 5.310 8 C -0.057 4.057 9 C -0.103 4.103 10 H 0.106 0.894 11 C -0.193 4.193 12 C 0.002 3.998 13 N -0.364 5.364 14 C 0.318 3.682 15 O -0.446 6.446 16 C -0.281 4.281 17 S 0.075 5.925 18 C -0.695 4.695 19 H 0.101 0.899 20 C -0.191 4.191 21 N -0.548 5.548 22 Si 0.820 3.180 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.182 1.182 26 N -0.248 5.248 27 C -0.033 4.033 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.208 0.792 32 H 0.115 0.885 33 H 0.079 0.921 34 H 0.162 0.838 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.252 0.748 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.080 0.920 46 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -34.709 2.620 -16.062 38.335 hybrid contribution -1.193 -0.959 1.819 2.378 sum -35.902 1.661 -14.242 38.660 Atomic orbital electron populations 1.20750 0.86526 1.04812 1.03945 1.22085 1.00885 0.94776 1.01037 1.23748 0.89051 0.99986 0.90619 1.68245 1.11242 1.30767 1.13434 1.23084 0.97864 0.83732 0.92469 1.20531 0.85301 1.02820 0.91222 1.60343 1.08300 1.50442 1.11919 1.21855 0.86497 1.01726 0.95665 1.21198 0.92028 1.00294 0.96803 0.89412 1.21711 1.02076 0.95749 0.99748 1.21370 0.94874 1.01554 0.81992 1.45729 1.06198 1.74626 1.09877 1.20060 0.82895 0.75265 0.89949 1.90689 1.54198 1.50653 1.49021 1.23378 1.01324 1.06689 0.96729 1.85576 1.00064 1.96052 1.10794 1.23216 0.96300 1.58252 0.91744 0.89907 1.26120 0.94453 0.93762 1.04715 1.70185 0.99478 1.47715 1.37434 0.84954 0.78025 0.78895 0.76099 1.19281 1.20281 1.18199 1.68246 1.11524 1.30647 1.14349 1.23710 0.88952 0.99972 0.90655 0.89422 0.89660 0.89723 0.79171 0.88512 0.92079 0.83777 0.90208 0.93948 0.91386 0.92757 0.93266 0.92310 0.92249 0.74766 0.87239 0.87187 0.91990 0.79023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.11 10.06 71.23 0.72 0.60 16 2 C -0.18 -1.54 5.91 -19.69 -0.12 -1.66 16 3 C 0.13 1.54 11.01 84.70 0.93 2.47 16 4 N -0.52 -9.42 10.33 -187.84 -1.94 -11.36 16 5 C 0.30 5.32 7.15 138.75 0.99 6.31 16 6 C 0.13 2.07 6.12 85.56 0.52 2.59 16 7 N -0.68 -10.24 5.94 -517.94 -3.08 -13.32 16 8 C 0.07 1.04 5.07 86.30 0.44 1.48 16 9 C -0.08 -1.29 2.57 -10.79 -0.03 -1.31 16 10 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 11 C -0.14 -2.15 8.95 71.98 0.64 -1.50 16 12 C 0.13 2.80 5.06 86.38 0.44 3.24 16 13 N -0.71 -18.06 5.28 -463.06 -2.45 -20.51 16 14 C 0.53 19.94 7.85 87.66 0.69 20.63 16 15 O -0.57 -26.75 15.86 -3.03 -0.05 -26.79 16 16 C -0.13 -5.21 6.16 71.24 0.44 -4.77 16 17 S -0.15 -8.54 20.57 -56.49 -1.16 -9.71 16 18 C -0.55 -31.53 9.50 67.95 0.65 -30.88 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.82 5.49 84.86 0.47 1.28 16 21 N -0.91 -56.44 13.22 21.65 0.29 -56.15 16 22 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 24 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 25 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 26 N -0.53 -9.01 10.34 -187.84 -1.94 -10.95 16 27 C 0.13 1.46 11.01 84.70 0.93 2.39 16 28 H 0.09 -0.03 8.14 -2.38 -0.02 -0.05 16 29 H 0.08 -0.06 8.10 -2.39 -0.02 -0.08 16 30 H 0.08 -0.05 8.10 -2.38 -0.02 -0.07 16 31 H 0.19 1.04 8.06 -2.91 -0.02 1.01 16 32 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.34 5.10 8.72 -89.70 -0.78 4.32 16 35 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.07 1.10 7.75 -2.39 -0.02 1.08 16 38 H 0.05 0.83 7.18 -2.39 -0.02 0.81 16 39 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.42 7.81 7.65 -92.71 -0.71 7.10 16 43 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 44 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 45 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.19 0.87 8.06 -2.91 -0.02 0.85 16 Total: -1.00 -81.61 403.66 -1.09 -82.70 By element: Atomic # 1 Polarization: 19.87 SS G_CDS: -0.50 Total: 19.37 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: 7.71 Total: 0.87 kcal Atomic # 7 Polarization: -103.17 SS G_CDS: -9.12 Total: -112.29 kcal Atomic # 8 Polarization: -26.75 SS G_CDS: -0.05 Total: -26.79 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.71 kcal Total: -81.61 -1.09 -82.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715226154.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.017 kcal (2) G-P(sol) polarization free energy of solvation -81.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds