Wall clock time and date at job start Tue Mar 31 2020 20:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 114.00015 * 2 1 4 4 H 1.09004 * 109.46849 * 329.99872 * 3 2 1 5 5 C 1.52997 * 109.47208 * 210.00250 * 3 2 1 6 6 C 1.50704 * 109.47116 * 65.00011 * 5 3 2 7 7 O 1.21284 * 120.00139 * 359.97438 * 6 5 3 8 8 N 1.34780 * 119.99621 * 180.02562 * 6 5 3 9 9 C 1.48114 * 127.03757 * 0.04161 * 8 6 5 10 10 C 1.54942 * 103.25311 * 140.67207 * 9 8 6 11 11 C 1.54614 * 102.83969 * 37.37977 * 10 9 8 12 12 C 1.52993 * 110.32981 * 97.03924 * 11 10 9 13 13 C 1.53000 * 110.32524 * 219.25781 * 11 10 9 14 14 N 1.46508 * 109.46980 * 295.61939 * 13 11 10 15 15 C 1.36935 * 119.99877 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00043 * 359.97438 * 15 14 13 17 17 C 1.38817 * 119.99750 * 180.02562 * 15 14 13 18 18 N 1.31614 * 119.99806 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47274 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47275 * 119.99874 * 19 17 15 22 22 H 1.48504 * 109.47024 * 240.00033 * 19 17 15 23 23 C 1.47485 * 127.02713 * 179.97438 * 8 6 5 24 24 C 1.52999 * 109.47308 * 89.99780 * 3 2 1 25 25 F 1.39893 * 109.47163 * 180.02562 * 24 3 2 26 26 F 1.39900 * 109.47116 * 300.00530 * 24 3 2 27 27 F 1.39905 * 109.46705 * 60.00033 * 24 3 2 28 28 H 1.08995 * 109.46696 * 300.00052 * 1 2 3 29 29 H 1.09003 * 109.46963 * 60.00026 * 1 2 3 30 30 H 1.08996 * 109.46859 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47053 * 304.99807 * 5 3 2 32 32 H 1.08995 * 109.47294 * 184.99816 * 5 3 2 33 33 H 1.08998 * 110.66152 * 259.11548 * 9 8 6 34 34 H 1.08999 * 110.65867 * 22.06282 * 9 8 6 35 35 H 1.08994 * 110.73972 * 279.03665 * 10 9 8 36 36 H 1.09004 * 110.73609 * 155.71278 * 10 9 8 37 37 H 1.08999 * 109.47492 * 304.37901 * 12 11 10 38 38 H 1.09005 * 109.47303 * 64.37971 * 12 11 10 39 39 H 1.09002 * 109.47437 * 184.37673 * 12 11 10 40 40 H 1.08997 * 109.47573 * 55.61851 * 13 11 10 41 41 H 1.08994 * 109.47450 * 175.62118 * 13 11 10 42 42 H 0.96994 * 119.99912 * 359.97438 * 14 13 11 43 43 H 0.97008 * 119.99527 * 179.97438 * 18 17 15 44 44 H 1.09003 * 109.91439 * 86.12402 * 23 8 6 45 45 H 1.08996 * 110.08042 * 324.93238 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 3.3589 1.2633 -0.7213 6 6 3.1416 0.9236 -2.1734 7 8 2.0186 0.7335 -2.5902 8 7 4.1953 0.8302 -3.0086 9 6 5.6233 1.0278 -2.6687 10 6 6.3395 -0.0738 -3.4899 11 6 5.5292 -0.1027 -4.8063 12 6 6.2244 0.7403 -5.8771 13 6 5.3556 -1.5432 -5.2920 14 7 6.6657 -2.1066 -5.6275 15 6 6.7603 -3.3927 -6.0881 16 1 5.8692 -3.9918 -6.2036 17 6 8.0017 -3.9267 -6.4055 18 7 9.0877 -3.1966 -6.2642 19 14 8.1309 -5.6813 -7.0331 20 1 6.7752 -6.2839 -7.1008 21 1 8.7402 -5.6791 -8.3873 22 1 8.9798 -6.4761 -6.1096 23 6 4.1622 0.5088 -4.4476 24 6 2.2177 1.7714 1.4425 25 9 2.7862 3.0496 1.4424 26 9 0.9845 1.8099 2.1020 27 9 3.0716 0.8807 2.1020 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.9931 0.5052 -0.2618 32 1 3.8427 2.2370 -0.6444 33 1 5.9588 2.0176 -2.9781 34 1 5.7880 0.8835 -1.6010 35 1 6.2812 -1.0351 -2.9794 36 1 7.3770 0.2006 -3.6812 37 1 6.3754 1.7523 -5.5015 38 1 7.1893 0.2952 -6.1202 39 1 5.6040 0.7739 -6.7727 40 1 4.8948 -2.1392 -4.5043 41 1 4.7182 -1.5542 -6.1760 42 1 7.4660 -1.5684 -5.5241 43 1 9.9552 -3.5699 -6.4857 44 1 3.9986 1.4173 -5.0272 45 1 3.3688 -0.2099 -4.6524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716879151.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:49 Heat of formation + Delta-G solvation = -220.965575 kcal Electronic energy + Delta-G solvation = -30650.695772 eV Core-core repulsion = 25867.773371 eV Total energy + Delta-G solvation = -4782.922401 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.47405 -48.02427 -47.91225 -40.36502 -38.85314 -37.70015 -34.85731 -33.10149 -32.48227 -30.31935 -29.43298 -28.00533 -26.81004 -26.26056 -25.29242 -23.33334 -22.61753 -22.27286 -19.65844 -19.05747 -18.94819 -18.45788 -18.42141 -17.21874 -17.05539 -16.57364 -16.03870 -15.75132 -15.11422 -14.92693 -14.74358 -14.66518 -14.56028 -14.38500 -14.19745 -14.10759 -14.07939 -13.94691 -13.67459 -13.39356 -13.10595 -12.61204 -12.56419 -12.49674 -12.36662 -12.21090 -12.03916 -11.74123 -11.62047 -11.39785 -11.01967 -10.83967 -10.63750 -10.35077 -10.24187 -10.22730 -10.00650 -9.89212 -9.66655 -8.88765 -8.71972 -6.92367 -5.78145 -3.05814 2.19221 2.50287 2.82455 2.98034 3.34565 3.42977 3.49372 3.51105 3.56051 3.90880 4.23956 4.37458 4.51193 4.59869 4.71344 4.85857 4.92142 4.99209 5.06671 5.14711 5.21536 5.26954 5.38766 5.46243 5.46589 5.58839 5.71712 5.84968 5.90280 5.97479 6.06660 6.21173 6.28569 6.39308 6.47439 6.49606 6.65831 6.76825 6.84953 7.46723 7.70827 8.03213 8.41365 9.53123 10.10119 10.45523 11.44901 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.018563 B = 0.002396 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.024592 B =11682.736493 C =11992.119923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.346 6.346 3 C 0.069 3.931 4 H 0.115 0.885 5 C -0.143 4.143 6 C 0.542 3.458 7 O -0.537 6.537 8 N -0.616 5.616 9 C 0.095 3.905 10 C -0.119 4.119 11 C -0.080 4.080 12 C -0.132 4.132 13 C 0.167 3.833 14 N -0.729 5.729 15 C -0.237 4.237 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.934 5.934 19 Si 0.906 3.094 20 H -0.281 1.281 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.118 3.882 24 C 0.429 3.571 25 F -0.180 7.180 26 F -0.182 7.182 27 F -0.173 7.173 28 H 0.049 0.951 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.385 0.615 43 H 0.254 0.746 44 H 0.067 0.933 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.189 15.399 14.638 25.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.263 6.263 3 C 0.008 3.992 4 H 0.132 0.868 5 C -0.183 4.183 6 C 0.330 3.670 7 O -0.414 6.414 8 N -0.350 5.350 9 C -0.028 4.028 10 C -0.157 4.157 11 C -0.081 4.081 12 C -0.190 4.190 13 C 0.039 3.961 14 N -0.374 5.374 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.206 1.206 21 H -0.219 1.219 22 H -0.219 1.219 23 C -0.004 4.004 24 C 0.374 3.626 25 F -0.162 7.162 26 F -0.163 7.163 27 F -0.155 7.155 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.113 0.887 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.219 0.781 43 H 0.064 0.936 44 H 0.085 0.915 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.826 14.966 14.454 24.981 hybrid contribution 0.363 -0.553 0.017 0.662 sum -13.463 14.413 14.471 24.462 Atomic orbital electron populations 1.23087 0.79336 1.04044 1.00961 1.88085 1.21436 1.22976 1.93783 1.22911 0.98345 0.89884 0.88081 0.86758 1.21784 0.96329 1.06170 0.94029 1.19549 0.83740 0.77274 0.86446 1.90709 1.22612 1.50506 1.77551 1.48749 1.06789 1.68960 1.10484 1.22718 0.79929 0.99773 1.00384 1.22775 0.99269 0.98754 0.94871 1.21659 0.93390 0.97409 0.95674 1.21812 1.01791 0.97923 0.97467 1.20698 0.89791 0.89024 0.96549 1.42360 1.02546 1.13373 1.79077 1.19276 0.92796 0.89484 1.35240 0.91224 1.24709 0.95460 0.98294 1.02515 1.69659 0.97421 1.36102 1.55123 0.86130 0.77375 0.84634 0.78149 1.20585 1.21908 1.21910 1.22149 0.98474 0.99992 0.79821 1.21511 0.74200 0.75379 0.91465 1.93190 1.85233 1.40783 1.96975 1.93164 1.43377 1.96189 1.83595 1.93212 1.70896 1.68038 1.83344 0.93209 0.92485 0.88651 0.86468 0.86398 0.90720 0.90313 0.90017 0.89589 0.93440 0.90794 0.92662 0.96212 0.96191 0.78078 0.93609 0.91495 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 10.70 101.05 1.08 1.27 16 2 O -0.35 -3.96 9.51 -49.66 -0.47 -4.43 16 3 C 0.07 0.65 1.72 -26.73 -0.05 0.61 16 4 H 0.11 0.97 7.60 -51.93 -0.39 0.58 16 5 C -0.14 -1.31 4.10 -27.88 -0.11 -1.42 16 6 C 0.54 6.85 7.77 -10.98 -0.09 6.76 16 7 O -0.54 -8.42 15.76 -8.87 -0.14 -8.56 16 8 N -0.62 -7.61 3.29 -169.77 -0.56 -8.17 16 9 C 0.09 0.97 6.95 -2.13 -0.01 0.95 16 10 C -0.12 -1.61 5.73 -24.86 -0.14 -1.75 16 11 C -0.08 -1.20 0.67 -153.15 -0.10 -1.30 16 12 C -0.13 -1.89 8.05 37.15 0.30 -1.59 16 13 C 0.17 3.27 4.85 -4.04 -0.02 3.25 16 14 N -0.73 -17.64 5.12 -59.91 -0.31 -17.95 16 15 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 19 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 C 0.12 1.61 6.28 -2.99 -0.02 1.59 16 24 C 0.43 3.94 2.85 37.16 0.11 4.05 16 25 F -0.18 -1.56 16.71 2.25 0.04 -1.52 16 26 F -0.18 -1.73 15.50 2.25 0.03 -1.69 16 27 F -0.17 -1.80 16.83 2.25 0.04 -1.76 16 28 H 0.05 0.38 6.49 -51.93 -0.34 0.04 16 29 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.12 1.02 7.71 -51.93 -0.40 0.62 16 32 H 0.12 0.76 7.66 -51.93 -0.40 0.36 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.65 7.23 -51.93 -0.38 0.27 16 35 H 0.08 1.28 7.84 -51.93 -0.41 0.87 16 36 H 0.09 1.15 7.85 -51.93 -0.41 0.75 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 1.24 6.75 -51.93 -0.35 0.89 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.02 0.41 8.11 -51.93 -0.42 -0.01 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.38 9.58 6.18 -40.82 -0.25 9.33 16 43 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.07 0.83 7.68 -51.93 -0.40 0.43 16 45 H 0.08 1.20 7.60 -51.93 -0.39 0.81 16 LS Contribution 375.46 15.07 5.66 5.66 Total: -1.00 -32.31 375.46 -5.93 -38.24 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -6.62 Total: 4.50 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 0.70 Total: 5.27 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: -0.14 Total: -52.96 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.61 Total: -12.99 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.11 Total: -4.97 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.31 -5.93 -38.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716879151.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -182.726 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds