Wall clock time and date at job start Tue Mar 31 2020 20:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42898 * 114.00015 * 2 1 4 4 H 1.09004 * 109.46849 * 329.99872 * 3 2 1 5 5 C 1.52997 * 109.47208 * 210.00250 * 3 2 1 6 6 C 1.50704 * 109.47116 * 65.00011 * 5 3 2 7 7 O 1.21284 * 120.00139 * 359.97438 * 6 5 3 8 8 N 1.34780 * 119.99621 * 180.02562 * 6 5 3 9 9 C 1.48114 * 127.03757 * 0.04161 * 8 6 5 10 10 C 1.54942 * 103.25311 * 140.67207 * 9 8 6 11 11 C 1.54614 * 102.83969 * 37.37977 * 10 9 8 12 12 C 1.52993 * 110.32981 * 97.03924 * 11 10 9 13 13 C 1.53000 * 110.32524 * 219.25781 * 11 10 9 14 14 N 1.46508 * 109.46980 * 295.61939 * 13 11 10 15 15 C 1.36935 * 119.99877 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00043 * 359.97438 * 15 14 13 17 17 C 1.38817 * 119.99750 * 180.02562 * 15 14 13 18 18 N 1.31614 * 119.99806 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.47274 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47275 * 119.99874 * 19 17 15 22 22 H 1.48504 * 109.47024 * 240.00033 * 19 17 15 23 23 C 1.47485 * 127.02713 * 179.97438 * 8 6 5 24 24 C 1.52999 * 109.47308 * 89.99780 * 3 2 1 25 25 F 1.39893 * 109.47163 * 180.02562 * 24 3 2 26 26 F 1.39900 * 109.47116 * 300.00530 * 24 3 2 27 27 F 1.39905 * 109.46705 * 60.00033 * 24 3 2 28 28 H 1.08995 * 109.46696 * 300.00052 * 1 2 3 29 29 H 1.09003 * 109.46963 * 60.00026 * 1 2 3 30 30 H 1.08996 * 109.46859 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47053 * 304.99807 * 5 3 2 32 32 H 1.08995 * 109.47294 * 184.99816 * 5 3 2 33 33 H 1.08998 * 110.66152 * 259.11548 * 9 8 6 34 34 H 1.08999 * 110.65867 * 22.06282 * 9 8 6 35 35 H 1.08994 * 110.73972 * 279.03665 * 10 9 8 36 36 H 1.09004 * 110.73609 * 155.71278 * 10 9 8 37 37 H 1.08999 * 109.47492 * 304.37901 * 12 11 10 38 38 H 1.09005 * 109.47303 * 64.37971 * 12 11 10 39 39 H 1.09002 * 109.47437 * 184.37673 * 12 11 10 40 40 H 1.08997 * 109.47573 * 55.61851 * 13 11 10 41 41 H 1.08994 * 109.47450 * 175.62118 * 13 11 10 42 42 H 0.96994 * 119.99912 * 359.97438 * 14 13 11 43 43 H 0.97008 * 119.99527 * 179.97438 * 18 17 15 44 44 H 1.09003 * 109.91439 * 86.12402 * 23 8 6 45 45 H 1.08996 * 110.08042 * 324.93238 * 23 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 -0.5139 5 6 3.3589 1.2633 -0.7213 6 6 3.1416 0.9236 -2.1734 7 8 2.0186 0.7335 -2.5902 8 7 4.1953 0.8302 -3.0086 9 6 5.6233 1.0278 -2.6687 10 6 6.3395 -0.0738 -3.4899 11 6 5.5292 -0.1027 -4.8063 12 6 6.2244 0.7403 -5.8771 13 6 5.3556 -1.5432 -5.2920 14 7 6.6657 -2.1066 -5.6275 15 6 6.7603 -3.3927 -6.0881 16 1 5.8692 -3.9918 -6.2036 17 6 8.0017 -3.9267 -6.4055 18 7 9.0877 -3.1966 -6.2642 19 14 8.1309 -5.6813 -7.0331 20 1 6.7752 -6.2839 -7.1008 21 1 8.7402 -5.6791 -8.3873 22 1 8.9798 -6.4761 -6.1096 23 6 4.1622 0.5088 -4.4476 24 6 2.2177 1.7714 1.4425 25 9 2.7862 3.0496 1.4424 26 9 0.9845 1.8099 2.1020 27 9 3.0716 0.8807 2.1020 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.9931 0.5052 -0.2618 32 1 3.8427 2.2370 -0.6444 33 1 5.9588 2.0176 -2.9781 34 1 5.7880 0.8835 -1.6010 35 1 6.2812 -1.0351 -2.9794 36 1 7.3770 0.2006 -3.6812 37 1 6.3754 1.7523 -5.5015 38 1 7.1893 0.2952 -6.1202 39 1 5.6040 0.7739 -6.7727 40 1 4.8948 -2.1392 -4.5043 41 1 4.7182 -1.5542 -6.1760 42 1 7.4660 -1.5684 -5.5241 43 1 9.9552 -3.5699 -6.4857 44 1 3.9986 1.4173 -5.0272 45 1 3.3688 -0.2099 -4.6524 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716879151.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:48 Heat of formation + Delta-G solvation = -241.271579 kcal Electronic energy + Delta-G solvation = -30651.576306 eV Core-core repulsion = 25867.773371 eV Total energy + Delta-G solvation = -4783.802936 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.19060 -48.72993 -48.64537 -41.36900 -39.80899 -38.68726 -36.46301 -34.44897 -33.54595 -32.08087 -30.50577 -28.89433 -27.64446 -27.51875 -26.70296 -24.65502 -23.93757 -23.27790 -20.54644 -20.13218 -19.76380 -19.40366 -19.17422 -19.11434 -17.92459 -17.49362 -17.06207 -16.68236 -16.44413 -15.94790 -15.78394 -15.61255 -15.44705 -15.39597 -15.26397 -15.08594 -14.98539 -14.89935 -14.81047 -14.76603 -14.33115 -14.14305 -13.54120 -13.35251 -13.28182 -13.21575 -13.03627 -12.93767 -12.84218 -12.73601 -12.57710 -12.33725 -12.12592 -12.06340 -11.62004 -11.48274 -11.36745 -10.99990 -10.95831 -10.92474 -9.71941 -8.97571 -7.95079 -5.22134 1.44240 1.47188 1.47701 1.56957 1.57526 1.94711 2.27688 2.55858 2.62778 2.83181 3.20201 3.36580 3.39812 3.58109 3.68440 3.74371 3.84397 3.91037 4.24885 4.28695 4.30928 4.33659 4.36846 4.45611 4.47850 4.53171 4.68954 4.75043 4.79915 4.82114 4.92183 4.94029 5.03738 5.13345 5.23435 5.28588 5.42351 5.50110 5.55815 5.76896 6.28221 6.52545 7.07404 7.35799 8.10533 8.37470 9.28218 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.018563 B = 0.002396 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.024592 B =11682.736493 C =11992.119923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.371 6.371 3 C 0.067 3.933 4 H 0.123 0.877 5 C -0.138 4.138 6 C 0.537 3.463 7 O -0.573 6.573 8 N -0.619 5.619 9 C 0.103 3.897 10 C -0.119 4.119 11 C -0.073 4.073 12 C -0.125 4.125 13 C 0.167 3.833 14 N -0.734 5.734 15 C -0.245 4.245 16 H 0.067 0.933 17 C -0.069 4.069 18 N -0.964 5.964 19 Si 0.968 3.032 20 H -0.272 1.272 21 H -0.292 1.292 22 H -0.292 1.292 23 C 0.124 3.876 24 C 0.436 3.564 25 F -0.174 7.174 26 F -0.184 7.184 27 F -0.181 7.181 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.152 0.848 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.053 0.947 40 H 0.005 0.995 41 H 0.013 0.987 42 H 0.380 0.620 43 H 0.252 0.748 44 H 0.086 0.914 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.331 16.903 15.605 26.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.289 6.289 3 C 0.006 3.994 4 H 0.141 0.859 5 C -0.177 4.177 6 C 0.327 3.673 7 O -0.453 6.453 8 N -0.352 5.352 9 C -0.018 4.018 10 C -0.158 4.158 11 C -0.074 4.074 12 C -0.182 4.182 13 C 0.040 3.960 14 N -0.378 5.378 15 C -0.377 4.377 16 H 0.085 0.915 17 C -0.262 4.262 18 N -0.614 5.614 19 Si 0.798 3.202 20 H -0.196 1.196 21 H -0.219 1.219 22 H -0.219 1.219 23 C 0.001 3.999 24 C 0.381 3.619 25 F -0.156 7.156 26 F -0.166 7.166 27 F -0.162 7.162 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.119 0.881 31 H 0.142 0.858 32 H 0.170 0.830 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.072 0.928 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.023 0.977 41 H 0.031 0.969 42 H 0.214 0.786 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.986 16.483 15.436 26.562 hybrid contribution 0.347 -1.028 -0.286 1.122 sum -13.640 15.454 15.150 25.581 Atomic orbital electron populations 1.23176 0.78466 1.04626 1.01361 1.88044 1.22574 1.24321 1.93930 1.23015 0.98701 0.89418 0.88282 0.85931 1.21848 0.96514 1.08146 0.91168 1.20150 0.83121 0.76410 0.87616 1.90695 1.24087 1.52096 1.78410 1.48832 1.07829 1.68676 1.09821 1.22847 0.77854 0.99652 1.01456 1.22713 0.99694 0.98961 0.94396 1.21525 0.94897 0.94354 0.96664 1.21735 0.99916 0.99298 0.97286 1.20780 0.87489 0.91980 0.95707 1.42471 1.04038 1.12540 1.78783 1.19599 0.92769 0.90836 1.34544 0.91489 1.25450 0.95265 1.02013 1.03487 1.69789 0.97637 1.37604 1.56420 0.85149 0.77495 0.80314 0.77250 1.19633 1.21870 1.21945 1.21969 0.96472 1.00086 0.81369 1.21393 0.73972 0.75397 0.91115 1.93202 1.85112 1.40337 1.96935 1.93158 1.43587 1.96205 1.83633 1.93200 1.71118 1.68385 1.83503 0.91983 0.92829 0.88127 0.85789 0.83042 0.87682 0.87652 0.92764 0.89409 0.89944 0.93680 0.92781 0.97706 0.96873 0.78612 0.93928 0.89587 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.70 113.37 1.21 1.54 16 2 O -0.37 -8.14 9.51 -135.19 -1.29 -9.43 16 3 C 0.07 1.14 1.72 30.59 0.05 1.19 16 4 H 0.12 1.87 7.60 -2.38 -0.02 1.85 16 5 C -0.14 -2.13 4.10 29.85 0.12 -2.01 16 6 C 0.54 12.58 7.77 87.66 0.68 13.26 16 7 O -0.57 -17.57 15.76 10.75 0.17 -17.40 16 8 N -0.62 -13.92 3.29 -809.43 -2.66 -16.58 16 9 C 0.10 1.77 6.95 86.73 0.60 2.37 16 10 C -0.12 -3.10 5.73 31.81 0.18 -2.91 16 11 C -0.07 -2.14 0.67 -51.30 -0.03 -2.17 16 12 C -0.12 -3.40 8.05 71.98 0.58 -2.82 16 13 C 0.17 6.72 4.85 86.38 0.42 7.14 16 14 N -0.73 -36.40 5.12 -343.44 -1.76 -38.15 16 15 C -0.25 -13.74 9.99 84.03 0.84 -12.90 16 16 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 17 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 18 N -0.96 -57.62 13.06 21.65 0.28 -57.33 16 19 Si 0.97 46.17 29.55 68.60 2.03 48.20 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 23 C 0.12 3.23 6.28 86.52 0.54 3.78 16 24 C 0.44 7.10 2.85 71.98 0.21 7.30 16 25 F -0.17 -2.54 16.71 44.97 0.75 -1.79 16 26 F -0.18 -3.20 15.50 44.97 0.70 -2.50 16 27 F -0.18 -3.40 16.83 44.97 0.76 -2.64 16 28 H 0.06 0.88 6.49 -2.39 -0.02 0.87 16 29 H 0.05 0.94 8.09 -2.39 -0.02 0.92 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.12 1.81 7.71 -2.39 -0.02 1.79 16 32 H 0.15 1.30 7.66 -2.39 -0.02 1.28 16 33 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.11 1.30 7.23 -2.39 -0.02 1.28 16 35 H 0.05 1.70 7.84 -2.39 -0.02 1.68 16 36 H 0.09 2.25 7.85 -2.38 -0.02 2.23 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.04 1.50 6.75 -2.38 -0.02 1.48 16 39 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.01 0.22 8.11 -2.39 -0.02 0.20 16 41 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.38 19.39 6.18 -92.71 -0.57 18.82 16 43 H 0.25 14.56 8.31 -92.70 -0.77 13.79 16 44 H 0.09 1.93 7.68 -2.39 -0.02 1.92 16 45 H 0.06 1.71 7.60 -2.39 -0.02 1.69 16 Total: -1.00 -70.73 375.46 5.29 -65.44 By element: Atomic # 1 Polarization: 21.48 SS G_CDS: 0.44 Total: 21.92 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 5.87 Total: 10.27 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -4.14 Total: -112.07 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -1.12 Total: -26.83 kcal Atomic # 9 Polarization: -9.14 SS G_CDS: 2.21 Total: -6.93 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -70.73 5.29 -65.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716879151.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -175.834 kcal (2) G-P(sol) polarization free energy of solvation -70.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -246.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -241.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds