Wall clock time and date at job start Tue Mar 31 2020 21:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42903 * 113.99516 * 2 1 4 4 H 1.09002 * 109.47382 * 30.00095 * 3 2 1 5 5 C 1.53000 * 109.46726 * 150.00349 * 3 2 1 6 6 C 1.50698 * 109.46984 * 294.99644 * 5 3 2 7 7 O 1.21286 * 120.00122 * 0.02562 * 6 5 3 8 8 N 1.34782 * 120.00288 * 180.02562 * 6 5 3 9 9 C 1.47428 * 125.64386 * 359.69003 * 8 6 5 10 10 C 1.55129 * 104.71940 * 155.81993 * 9 8 6 11 11 H 1.08999 * 110.90309 * 155.27797 * 10 9 8 12 12 N 1.46500 * 111.19190 * 279.18787 * 10 9 8 13 13 C 1.36932 * 120.00233 * 267.18940 * 12 10 9 14 14 H 1.07995 * 120.00340 * 0.02562 * 13 12 10 15 15 C 1.38821 * 119.99887 * 180.02562 * 13 12 10 16 16 N 1.31618 * 120.00094 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99883 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46957 * 60.00151 * 17 15 13 19 19 H 1.48498 * 109.47057 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46996 * 300.00242 * 17 15 13 21 21 C 1.55156 * 101.48580 * 37.29630 * 10 9 8 22 22 C 1.53003 * 110.71582 * 205.96685 * 21 10 9 23 23 C 1.53002 * 110.87276 * 82.76636 * 21 10 9 24 24 C 1.47015 * 125.65124 * 180.02562 * 8 6 5 25 25 C 1.53002 * 109.46923 * 270.00121 * 3 2 1 26 26 F 1.39895 * 109.47052 * 299.99728 * 25 3 2 27 27 F 1.39889 * 109.47380 * 60.00300 * 25 3 2 28 28 F 1.39906 * 109.46680 * 180.02562 * 25 3 2 29 29 H 1.08996 * 109.46835 * 299.99639 * 1 2 3 30 30 H 1.08994 * 109.47272 * 60.00221 * 1 2 3 31 31 H 1.09002 * 109.46835 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47170 * 54.99820 * 5 3 2 33 33 H 1.09001 * 109.46952 * 174.99897 * 5 3 2 34 34 H 1.08995 * 110.36757 * 274.74806 * 9 8 6 35 35 H 1.09007 * 110.36695 * 37.07272 * 9 8 6 36 36 H 0.97008 * 119.99651 * 87.19181 * 12 10 9 37 37 H 0.96998 * 120.00086 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.46626 * 174.97349 * 22 21 10 39 39 H 1.09001 * 109.47340 * 294.97549 * 22 21 10 40 40 H 1.08993 * 109.47077 * 54.98238 * 22 21 10 41 41 H 1.09003 * 109.46867 * 304.93594 * 23 21 10 42 42 H 1.09002 * 109.46496 * 64.93236 * 23 21 10 43 43 H 1.08996 * 109.46782 * 184.93324 * 23 21 10 44 44 H 1.09004 * 109.88127 * 300.43345 * 24 8 6 45 45 H 1.08999 * 109.88702 * 61.44481 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3589 1.2633 0.7212 6 6 3.1417 0.9237 2.1732 7 8 2.0187 0.7336 2.5901 8 7 4.1952 0.8311 3.0087 9 6 5.6076 1.0301 2.6357 10 6 6.3114 1.4338 3.9578 11 1 7.3734 1.1909 3.9230 12 7 6.1094 2.8545 4.2529 13 6 7.0298 3.7783 3.8350 14 1 7.9044 3.4596 3.2874 15 6 6.8386 5.1244 4.1151 16 7 5.7729 5.5128 4.7828 17 14 8.0938 6.3846 3.5443 18 1 8.2039 6.3383 2.0641 19 1 7.6603 7.7410 3.9657 20 1 9.4147 6.0764 4.1488 21 6 5.5700 0.5410 4.9876 22 6 5.6078 1.1746 6.3798 23 6 6.1685 -0.8668 5.0193 24 6 4.1270 0.5082 4.4413 25 6 2.2176 1.7714 -1.4425 26 9 3.0715 0.8809 -2.1020 27 9 0.9845 1.8100 -2.1020 28 9 2.7870 3.0493 -1.4425 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9931 0.5053 0.2617 33 1 3.8427 2.2371 0.6443 34 1 6.0308 0.1047 2.2452 35 1 5.6966 1.8293 1.8996 36 1 5.3236 3.1408 4.7444 37 1 5.6395 6.4533 4.9788 38 1 5.0074 0.5783 7.0667 39 1 6.6378 1.2106 6.7347 40 1 5.2052 2.1862 6.3296 41 1 6.1595 -1.2881 4.0140 42 1 7.1947 -0.8171 5.3832 43 1 5.5776 -1.4979 5.6831 44 1 3.5177 1.2487 4.9596 45 1 3.6989 -0.4849 4.5776 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734503207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:38 Heat of formation + Delta-G solvation = -221.209732 kcal Electronic energy + Delta-G solvation = -31604.690384 eV Core-core repulsion = 26821.757395 eV Total energy + Delta-G solvation = -4782.932989 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -50.22232 -47.76880 -47.66487 -40.12110 -38.68651 -37.47453 -33.92473 -33.35503 -32.42378 -30.77747 -28.06270 -27.86281 -26.68032 -26.62635 -25.48790 -23.85460 -22.44736 -21.55988 -19.33741 -18.84550 -18.78457 -18.24861 -18.16844 -17.24987 -16.75940 -16.32069 -15.75706 -15.40522 -15.09457 -14.63551 -14.54883 -14.43489 -14.31547 -14.13285 -14.06653 -13.91611 -13.83792 -13.82212 -13.71619 -13.06100 -12.84508 -12.50087 -12.30705 -12.26597 -12.16997 -11.92570 -11.84401 -11.58084 -11.46664 -11.35927 -11.03881 -10.92376 -10.56694 -10.47564 -10.30540 -10.02405 -9.93734 -9.69995 -9.61231 -9.05742 -8.26607 -7.08024 -5.87079 -3.17303 2.46824 2.88714 3.18992 3.22769 3.37798 3.42963 3.44124 3.61547 3.86508 4.17579 4.48425 4.59000 4.66656 4.77893 5.04998 5.08613 5.17404 5.18419 5.31693 5.33369 5.41556 5.52172 5.57239 5.59339 5.67606 5.74289 5.85329 5.96087 6.04304 6.14673 6.19347 6.22822 6.31701 6.38348 6.52960 6.61445 6.66948 6.73999 6.91253 7.59958 7.85563 8.30396 8.41450 9.42458 9.97176 10.31858 11.34667 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.004026 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.007036 B = 6953.254280 C = 8766.849964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.348 6.348 3 C 0.070 3.930 4 H 0.115 0.885 5 C -0.141 4.141 6 C 0.540 3.460 7 O -0.548 6.548 8 N -0.600 5.600 9 C 0.064 3.936 10 C 0.179 3.821 11 H 0.075 0.925 12 N -0.708 5.708 13 C -0.249 4.249 14 H 0.072 0.928 15 C -0.006 4.006 16 N -0.928 5.928 17 Si 0.906 3.094 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 C -0.091 4.091 22 C -0.126 4.126 23 C -0.131 4.131 24 C 0.124 3.876 25 C 0.429 3.571 26 F -0.176 7.176 27 F -0.184 7.184 28 F -0.176 7.176 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.122 0.878 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.387 0.613 37 H 0.257 0.743 38 H 0.043 0.957 39 H 0.058 0.942 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.967 -12.221 -7.560 15.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.265 6.265 3 C 0.009 3.991 4 H 0.133 0.867 5 C -0.181 4.181 6 C 0.328 3.672 7 O -0.427 6.427 8 N -0.332 5.332 9 C -0.062 4.062 10 C 0.066 3.934 11 H 0.093 0.907 12 N -0.348 5.348 13 C -0.380 4.380 14 H 0.090 0.910 15 C -0.203 4.203 16 N -0.575 5.575 17 Si 0.737 3.263 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 C -0.092 4.092 22 C -0.184 4.184 23 C -0.189 4.189 24 C 0.002 3.998 25 C 0.375 3.625 26 F -0.157 7.157 27 F -0.165 7.165 28 F -0.158 7.158 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.110 0.890 32 H 0.130 0.870 33 H 0.140 0.860 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.222 0.778 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.376 -12.330 -7.463 15.760 hybrid contribution 0.276 1.218 -0.615 1.392 sum -6.100 -11.112 -8.078 15.031 Atomic orbital electron populations 1.23053 0.79655 1.03645 1.01037 1.88036 1.21190 1.23445 1.93872 1.22935 0.98613 0.89480 0.88050 0.86725 1.21761 0.95777 1.06470 0.94108 1.19510 0.83798 0.77238 0.86640 1.90666 1.22785 1.51418 1.77803 1.48233 1.07064 1.68310 1.09585 1.23543 0.80641 0.99808 1.02206 1.21377 0.96667 0.85883 0.89467 0.90736 1.42364 1.26908 0.99298 1.66204 1.19183 1.01516 0.87367 1.29927 0.91024 1.24742 0.97793 0.97116 1.00632 1.69647 1.27891 1.15716 1.44284 0.86293 0.80740 0.80930 0.78327 1.21189 1.21717 1.21181 1.21941 0.94156 0.96017 0.97122 1.21636 1.01936 1.01196 0.93611 1.21758 1.00718 0.94949 1.01458 1.21968 0.97077 1.00070 0.80727 1.21505 0.74085 0.75577 0.91375 1.93186 1.70988 1.68168 1.83396 1.93147 1.43501 1.96228 1.83656 1.93226 1.85085 1.40525 1.96932 0.92498 0.93291 0.88960 0.86993 0.85972 0.92344 0.90183 0.77751 0.93296 0.93775 0.92288 0.90965 0.92753 0.92254 0.92816 0.91518 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.70 101.05 1.08 1.32 16 2 O -0.35 -4.68 9.52 -49.66 -0.47 -5.15 16 3 C 0.07 0.91 1.72 -26.73 -0.05 0.86 16 4 H 0.12 1.46 7.60 -51.93 -0.39 1.06 16 5 C -0.14 -1.92 4.17 -27.88 -0.12 -2.03 16 6 C 0.54 8.99 7.73 -10.98 -0.08 8.90 16 7 O -0.55 -10.38 15.75 -8.88 -0.14 -10.52 16 8 N -0.60 -9.79 3.32 -170.38 -0.57 -10.36 16 9 C 0.06 1.00 6.09 -2.41 -0.01 0.98 16 10 C 0.18 3.10 2.96 -65.66 -0.19 2.91 16 11 H 0.07 1.27 7.99 -51.93 -0.42 0.86 16 12 N -0.71 -15.87 4.57 -51.24 -0.23 -16.11 16 13 C -0.25 -6.30 9.96 -15.06 -0.15 -6.45 16 14 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 15 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 16 N -0.93 -26.62 13.06 55.49 0.72 -25.90 16 17 Si 0.91 21.29 29.55 -169.99 -5.02 16.27 16 18 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 21 C -0.09 -1.34 0.80 -152.67 -0.12 -1.47 16 22 C -0.13 -1.95 8.15 37.16 0.30 -1.65 16 23 C -0.13 -1.57 8.44 37.16 0.31 -1.25 16 24 C 0.12 1.97 6.03 -3.07 -0.02 1.96 16 25 C 0.43 5.36 2.85 37.16 0.11 5.47 16 26 F -0.18 -2.27 16.83 2.25 0.04 -2.23 16 27 F -0.18 -2.24 15.50 2.25 0.03 -2.21 16 28 F -0.18 -2.32 16.71 2.25 0.04 -2.28 16 29 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 30 H 0.05 0.47 6.49 -51.93 -0.34 0.13 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.11 1.35 7.94 -51.93 -0.41 0.94 16 33 H 0.12 1.62 7.37 -51.93 -0.38 1.23 16 34 H 0.06 0.77 7.71 -51.93 -0.40 0.37 16 35 H 0.08 1.33 7.48 -51.92 -0.39 0.94 16 36 H 0.39 9.52 6.32 -40.82 -0.26 9.26 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.34 6.34 -51.93 -0.33 1.01 16 41 H 0.05 0.62 7.44 -51.93 -0.39 0.23 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.07 1.18 7.82 -51.93 -0.41 0.77 16 45 H 0.06 0.90 7.85 -51.93 -0.41 0.49 16 LS Contribution 374.55 15.07 5.64 5.64 Total: -1.00 -29.76 374.55 -5.59 -35.35 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.60 Total: 8.19 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 0.96 Total: 9.29 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: -0.08 Total: -52.36 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.61 Total: -15.67 kcal Atomic # 9 Polarization: -6.83 SS G_CDS: 0.11 Total: -6.72 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.76 -5.59 -35.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734503207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.860 kcal (2) G-P(sol) polarization free energy of solvation -29.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds