Wall clock time and date at job start Tue Mar 31 2020 21:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42903 * 113.99516 * 2 1 4 4 H 1.09002 * 109.47382 * 30.00095 * 3 2 1 5 5 C 1.53000 * 109.46726 * 150.00349 * 3 2 1 6 6 C 1.50698 * 109.46984 * 294.99644 * 5 3 2 7 7 O 1.21286 * 120.00122 * 0.02562 * 6 5 3 8 8 N 1.34782 * 120.00288 * 180.02562 * 6 5 3 9 9 C 1.47428 * 125.64386 * 359.69003 * 8 6 5 10 10 C 1.55129 * 104.71940 * 155.81993 * 9 8 6 11 11 H 1.08999 * 110.90309 * 155.27797 * 10 9 8 12 12 N 1.46500 * 111.19190 * 279.18787 * 10 9 8 13 13 C 1.36932 * 120.00233 * 267.18940 * 12 10 9 14 14 H 1.07995 * 120.00340 * 0.02562 * 13 12 10 15 15 C 1.38821 * 119.99887 * 180.02562 * 13 12 10 16 16 N 1.31618 * 120.00094 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99883 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.46957 * 60.00151 * 17 15 13 19 19 H 1.48498 * 109.47057 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.46996 * 300.00242 * 17 15 13 21 21 C 1.55156 * 101.48580 * 37.29630 * 10 9 8 22 22 C 1.53003 * 110.71582 * 205.96685 * 21 10 9 23 23 C 1.53002 * 110.87276 * 82.76636 * 21 10 9 24 24 C 1.47015 * 125.65124 * 180.02562 * 8 6 5 25 25 C 1.53002 * 109.46923 * 270.00121 * 3 2 1 26 26 F 1.39895 * 109.47052 * 299.99728 * 25 3 2 27 27 F 1.39889 * 109.47380 * 60.00300 * 25 3 2 28 28 F 1.39906 * 109.46680 * 180.02562 * 25 3 2 29 29 H 1.08996 * 109.46835 * 299.99639 * 1 2 3 30 30 H 1.08994 * 109.47272 * 60.00221 * 1 2 3 31 31 H 1.09002 * 109.46835 * 179.97438 * 1 2 3 32 32 H 1.08990 * 109.47170 * 54.99820 * 5 3 2 33 33 H 1.09001 * 109.46952 * 174.99897 * 5 3 2 34 34 H 1.08995 * 110.36757 * 274.74806 * 9 8 6 35 35 H 1.09007 * 110.36695 * 37.07272 * 9 8 6 36 36 H 0.97008 * 119.99651 * 87.19181 * 12 10 9 37 37 H 0.96998 * 120.00086 * 179.97438 * 16 15 13 38 38 H 1.08999 * 109.46626 * 174.97349 * 22 21 10 39 39 H 1.09001 * 109.47340 * 294.97549 * 22 21 10 40 40 H 1.08993 * 109.47077 * 54.98238 * 22 21 10 41 41 H 1.09003 * 109.46867 * 304.93594 * 23 21 10 42 42 H 1.09002 * 109.46496 * 64.93236 * 23 21 10 43 43 H 1.08996 * 109.46782 * 184.93324 * 23 21 10 44 44 H 1.09004 * 109.88127 * 300.43345 * 24 8 6 45 45 H 1.08999 * 109.88702 * 61.44481 * 24 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 3.3589 1.2633 0.7212 6 6 3.1417 0.9237 2.1732 7 8 2.0187 0.7336 2.5901 8 7 4.1952 0.8311 3.0087 9 6 5.6076 1.0301 2.6357 10 6 6.3114 1.4338 3.9578 11 1 7.3734 1.1909 3.9230 12 7 6.1094 2.8545 4.2529 13 6 7.0298 3.7783 3.8350 14 1 7.9044 3.4596 3.2874 15 6 6.8386 5.1244 4.1151 16 7 5.7729 5.5128 4.7828 17 14 8.0938 6.3846 3.5443 18 1 8.2039 6.3383 2.0641 19 1 7.6603 7.7410 3.9657 20 1 9.4147 6.0764 4.1488 21 6 5.5700 0.5410 4.9876 22 6 5.6078 1.1746 6.3798 23 6 6.1685 -0.8668 5.0193 24 6 4.1270 0.5082 4.4413 25 6 2.2176 1.7714 -1.4425 26 9 3.0715 0.8809 -2.1020 27 9 0.9845 1.8100 -2.1020 28 9 2.7870 3.0493 -1.4425 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.9931 0.5053 0.2617 33 1 3.8427 2.2371 0.6443 34 1 6.0308 0.1047 2.2452 35 1 5.6966 1.8293 1.8996 36 1 5.3236 3.1408 4.7444 37 1 5.6395 6.4533 4.9788 38 1 5.0074 0.5783 7.0667 39 1 6.6378 1.2106 6.7347 40 1 5.2052 2.1862 6.3296 41 1 6.1595 -1.2881 4.0140 42 1 7.1947 -0.8171 5.3832 43 1 5.5776 -1.4979 5.6831 44 1 3.5177 1.2487 4.9596 45 1 3.6989 -0.4849 4.5776 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734503207.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:37 Heat of formation + Delta-G solvation = -238.935223 kcal Electronic energy + Delta-G solvation = -31605.459019 eV Core-core repulsion = 26821.757395 eV Total energy + Delta-G solvation = -4783.701624 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -51.23290 -48.77322 -48.68158 -41.40708 -39.84109 -38.67007 -35.66133 -34.68240 -33.50317 -32.54768 -29.47910 -28.97850 -27.93555 -27.51631 -26.68284 -25.61131 -23.55415 -22.94296 -20.53322 -20.16703 -19.79889 -19.36153 -19.20915 -19.03685 -17.83922 -17.59241 -17.09589 -16.58465 -16.42082 -15.95412 -15.69392 -15.57672 -15.42070 -15.37338 -15.33267 -15.13490 -14.91302 -14.85347 -14.82848 -14.58585 -14.24994 -13.64514 -13.55510 -13.43284 -13.26454 -13.18492 -12.94347 -12.85663 -12.76297 -12.74055 -12.58215 -12.35854 -12.16006 -12.04206 -11.77937 -11.42689 -11.26726 -11.01416 -10.95343 -10.84997 -9.63570 -8.92192 -7.89540 -5.17180 1.43051 1.51930 1.52784 1.58596 1.60125 2.02706 2.23032 2.59278 2.59635 2.81378 3.16575 3.40714 3.42634 3.58230 3.72357 3.85977 3.90040 3.93651 4.11413 4.26688 4.34622 4.38330 4.46161 4.50646 4.52909 4.66419 4.77109 4.78623 4.82001 4.92555 4.93602 5.04457 5.12367 5.15837 5.34802 5.36720 5.46350 5.57515 5.64790 5.72939 6.31244 6.56344 7.11412 7.39113 8.14360 8.36684 9.33486 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.010426 B = 0.004026 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2685.007036 B = 6953.254280 C = 8766.849964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.362 6.362 3 C 0.072 3.928 4 H 0.112 0.888 5 C -0.136 4.136 6 C 0.533 3.467 7 O -0.576 6.576 8 N -0.604 5.604 9 C 0.073 3.927 10 C 0.167 3.833 11 H 0.085 0.915 12 N -0.720 5.720 13 C -0.233 4.233 14 H 0.084 0.916 15 C -0.071 4.071 16 N -0.970 5.970 17 Si 0.964 3.036 18 H -0.279 1.279 19 H -0.305 1.305 20 H -0.278 1.278 21 C -0.079 4.079 22 C -0.121 4.121 23 C -0.124 4.124 24 C 0.124 3.876 25 C 0.436 3.564 26 F -0.176 7.176 27 F -0.181 7.181 28 F -0.180 7.180 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.131 0.869 33 H 0.124 0.876 34 H 0.096 0.904 35 H 0.069 0.931 36 H 0.373 0.627 37 H 0.247 0.753 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.033 0.967 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.039 0.961 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.895 -14.319 -8.670 17.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.280 6.280 3 C 0.011 3.989 4 H 0.130 0.870 5 C -0.176 4.176 6 C 0.322 3.678 7 O -0.457 6.457 8 N -0.335 5.335 9 C -0.052 4.052 10 C 0.056 3.944 11 H 0.103 0.897 12 N -0.358 5.358 13 C -0.365 4.365 14 H 0.102 0.898 15 C -0.263 4.263 16 N -0.620 5.620 17 Si 0.795 3.205 18 H -0.205 1.205 19 H -0.232 1.232 20 H -0.204 1.204 21 C -0.080 4.080 22 C -0.179 4.179 23 C -0.182 4.182 24 C 0.001 3.999 25 C 0.382 3.618 26 F -0.158 7.158 27 F -0.162 7.162 28 F -0.162 7.162 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.149 0.851 33 H 0.142 0.858 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.206 0.794 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.265 -14.487 -8.602 17.652 hybrid contribution -0.087 1.763 -0.254 1.783 sum -5.352 -12.725 -8.856 16.401 Atomic orbital electron populations 1.23204 0.78417 1.04933 1.01167 1.88005 1.22575 1.23500 1.93931 1.22871 0.98315 0.89533 0.88179 0.87005 1.21751 0.96581 1.07046 0.92181 1.20033 0.83385 0.76634 0.87770 1.90647 1.23814 1.52665 1.78564 1.48351 1.07439 1.68046 1.09699 1.23447 0.80020 1.01195 1.00585 1.21679 0.97796 0.83623 0.91279 0.89734 1.42517 1.25898 1.01258 1.66159 1.19615 1.01545 0.87799 1.27561 0.89839 1.25435 0.99599 0.99132 1.02127 1.69813 1.30111 1.15128 1.46975 0.85345 0.78941 0.78189 0.78066 1.20476 1.23172 1.20400 1.21893 0.93110 0.97381 0.95635 1.21562 1.01931 0.99511 0.94879 1.21720 1.01219 0.92549 1.02683 1.21981 0.97502 0.99817 0.80566 1.21357 0.74079 0.75303 0.91089 1.93184 1.71030 1.68165 1.83390 1.93151 1.43333 1.96199 1.83560 1.93220 1.85175 1.40858 1.96939 0.93300 0.92199 0.87173 0.85127 0.85801 0.88631 0.91246 0.79410 0.94381 0.91572 0.92360 0.94753 0.91648 0.91274 0.91294 0.94297 0.90862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.70 113.37 1.21 1.58 16 2 O -0.36 -9.26 9.52 -135.18 -1.29 -10.55 16 3 C 0.07 1.80 1.72 30.60 0.05 1.85 16 4 H 0.11 2.82 7.60 -2.39 -0.02 2.80 16 5 C -0.14 -3.51 4.17 29.85 0.12 -3.39 16 6 C 0.53 17.29 7.73 87.66 0.68 17.97 16 7 O -0.58 -21.75 15.75 10.75 0.17 -21.58 16 8 N -0.60 -18.94 3.32 -811.35 -2.70 -21.64 16 9 C 0.07 2.09 6.09 86.93 0.53 2.62 16 10 C 0.17 5.50 2.96 46.46 0.14 5.64 16 11 H 0.08 2.65 7.99 -2.39 -0.02 2.63 16 12 N -0.72 -32.30 4.57 -316.02 -1.44 -33.74 16 13 C -0.23 -11.72 9.96 84.04 0.84 -10.88 16 14 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 15 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 16 N -0.97 -57.36 13.06 21.65 0.28 -57.07 16 17 Si 0.96 44.12 29.55 68.60 2.03 46.15 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 19 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 21 C -0.08 -2.19 0.80 -50.99 -0.04 -2.23 16 22 C -0.12 -3.68 8.15 71.98 0.59 -3.09 16 23 C -0.12 -2.51 8.44 71.98 0.61 -1.90 16 24 C 0.12 3.83 6.03 86.73 0.52 4.35 16 25 C 0.44 10.32 2.85 71.98 0.21 10.52 16 26 F -0.18 -4.23 16.83 44.97 0.76 -3.47 16 27 F -0.18 -4.16 15.50 44.97 0.70 -3.46 16 28 F -0.18 -4.55 16.71 44.97 0.75 -3.80 16 29 H 0.05 1.06 8.08 -2.39 -0.02 1.04 16 30 H 0.06 1.06 6.49 -2.39 -0.02 1.05 16 31 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.13 2.85 7.94 -2.39 -0.02 2.83 16 33 H 0.12 3.16 7.37 -2.39 -0.02 3.14 16 34 H 0.10 2.11 7.71 -2.39 -0.02 2.09 16 35 H 0.07 2.18 7.48 -2.38 -0.02 2.16 16 36 H 0.37 18.90 6.32 -92.70 -0.59 18.31 16 37 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 38 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.03 1.30 6.34 -2.39 -0.02 1.29 16 41 H 0.06 1.20 7.44 -2.39 -0.02 1.18 16 42 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.04 1.41 7.82 -2.39 -0.02 1.39 16 45 H 0.07 2.06 7.85 -2.39 -0.02 2.05 16 Total: -1.00 -64.71 374.55 5.61 -59.11 By element: Atomic # 1 Polarization: 29.94 SS G_CDS: 0.43 Total: 30.37 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 5.92 Total: 19.69 kcal Atomic # 7 Polarization: -108.59 SS G_CDS: -3.86 Total: -112.45 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -1.12 Total: -32.13 kcal Atomic # 9 Polarization: -12.94 SS G_CDS: 2.21 Total: -10.74 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -64.71 5.61 -59.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734503207.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.830 kcal (2) G-P(sol) polarization free energy of solvation -64.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds