Wall clock time and date at job start Tue Mar 31 2020 21:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.32153 * 120.00085 * 2 1 4 4 C 1.32127 * 120.00194 * 180.27428 * 3 2 1 5 5 C 1.38390 * 119.99277 * 359.73793 * 4 3 2 6 6 N 1.32119 * 120.00262 * 359.97438 * 5 4 3 7 7 C 1.32154 * 119.99908 * 359.97438 * 6 5 4 8 8 C 1.50704 * 120.00172 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47383 * 89.99352 * 8 7 6 10 10 C 1.46895 * 111.00198 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47398 * 180.02562 * 10 9 8 12 12 H 1.09001 * 109.47112 * 305.00414 * 11 10 9 13 13 C 1.53001 * 109.47100 * 65.00143 * 11 10 9 14 14 C 1.53003 * 109.47014 * 184.99735 * 11 10 9 15 15 N 1.46499 * 109.46708 * 174.99880 * 14 11 10 16 16 C 1.34784 * 119.99893 * 180.02562 * 15 14 11 17 17 O 1.21283 * 119.99649 * 0.02562 * 16 15 14 18 18 C 1.50697 * 119.99774 * 179.72962 * 16 15 14 19 19 S 1.81008 * 109.46759 * 180.02562 * 18 16 15 20 20 C 1.76198 * 99.99946 * 179.97438 * 19 18 16 21 21 H 1.08000 * 119.99996 * 359.97438 * 20 19 18 22 22 C 1.38798 * 120.00252 * 179.97438 * 20 19 18 23 23 N 1.31635 * 119.99702 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00159 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47239 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47003 * 120.00084 * 24 22 20 27 27 H 1.48500 * 109.46787 * 239.99933 * 24 22 20 28 28 H 1.09005 * 109.47032 * 270.24411 * 1 2 3 29 29 H 1.09002 * 109.46910 * 30.24121 * 1 2 3 30 30 H 1.08994 * 109.47431 * 150.24492 * 1 2 3 31 31 H 1.07993 * 120.00014 * 179.75449 * 4 3 2 32 32 H 1.08002 * 119.99540 * 179.97438 * 5 4 3 33 33 H 1.09005 * 109.46714 * 329.99566 * 8 7 6 34 34 H 1.09004 * 109.47145 * 209.99958 * 8 7 6 35 35 H 1.00897 * 111.00146 * 303.96256 * 9 8 7 36 36 H 1.09001 * 109.47061 * 59.99910 * 10 9 8 37 37 H 1.08997 * 109.47148 * 300.00255 * 10 9 8 38 38 H 1.08999 * 109.47109 * 59.99648 * 13 11 10 39 39 H 1.08996 * 109.47478 * 180.02562 * 13 11 10 40 40 H 1.09005 * 109.47003 * 300.00163 * 13 11 10 41 41 H 1.08998 * 109.46692 * 55.00382 * 14 11 10 42 42 H 1.08994 * 109.47584 * 295.00246 * 14 11 10 43 43 H 0.97005 * 120.00261 * 0.02562 * 15 14 11 44 44 H 1.09001 * 109.46809 * 299.99238 * 18 16 15 45 45 H 1.08993 * 109.47525 * 59.99679 * 18 16 15 46 46 H 0.97000 * 119.99806 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1445 -0.0055 5 6 4.1809 -0.0541 -0.0057 6 7 3.5202 -1.1982 0.0000 7 6 2.1987 -1.1981 0.0065 8 6 1.4451 -2.5032 0.0125 9 7 1.2071 -2.9249 1.3993 10 6 0.4735 -4.1968 1.4443 11 6 0.2445 -4.6022 2.9017 12 1 1.2003 -4.6330 3.4248 13 6 -0.6736 -3.5814 3.5769 14 6 -0.4081 -5.9853 2.9498 15 7 -0.5185 -6.4249 4.3429 16 6 -1.0658 -7.6227 4.6302 17 8 -1.4665 -8.3366 3.7354 18 6 -1.1737 -8.0775 6.0628 19 16 -1.9458 -9.7137 6.1197 20 6 -1.9457 -9.9917 7.8597 21 1 -1.5402 -9.2446 8.5258 22 6 -2.4669 -11.1707 8.3741 23 7 -2.9616 -12.0811 7.5622 24 14 -2.4674 -11.4651 10.2188 25 1 -1.8603 -10.2974 10.9066 26 1 -3.8636 -11.6472 10.6905 27 1 -1.6782 -12.6851 10.5256 28 1 -0.3633 0.0044 1.0277 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3634 -0.8921 -0.5100 31 1 4.0290 2.0798 -0.0095 32 1 5.2609 -0.0541 -0.0106 33 1 2.0316 -3.2637 -0.5030 34 1 0.4901 -2.3736 -0.4969 35 1 2.0741 -2.9895 1.9114 36 1 1.0536 -4.9689 0.9388 37 1 -0.4881 -4.0794 0.9448 38 1 -1.6294 -3.5505 3.0538 39 1 -0.8365 -3.8699 4.6152 40 1 -0.2087 -2.5960 3.5426 41 1 0.2030 -6.6949 2.3921 42 1 -1.4020 -5.9337 2.5052 43 1 -0.1976 -5.8541 5.0585 44 1 -0.1779 -8.1306 6.5031 45 1 -1.7819 -7.3686 6.6244 46 1 -3.3254 -12.9053 7.9217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753619248.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:12 Heat of formation + Delta-G solvation = -1.230117 kcal Electronic energy + Delta-G solvation = -25124.691067 eV Core-core repulsion = 21368.199472 eV Total energy + Delta-G solvation = -3756.491594 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.66531 -39.32519 -37.76690 -35.65586 -34.94400 -33.58322 -32.42371 -31.99591 -29.37913 -28.66561 -27.50722 -26.39072 -25.46718 -24.27377 -23.42096 -22.61444 -20.70866 -20.25322 -18.35494 -17.84628 -17.05878 -16.42886 -16.38245 -16.13223 -15.80243 -15.70758 -15.21783 -14.80248 -14.70991 -14.59663 -14.07536 -13.90069 -13.57795 -13.39916 -13.24779 -13.07033 -13.01816 -12.73995 -12.58447 -12.47780 -12.10365 -11.98746 -11.80324 -11.52025 -11.30269 -11.19081 -11.06812 -11.03477 -11.01057 -10.74661 -9.79948 -9.61064 -9.55267 -9.38504 -9.07278 -8.92129 -8.84750 -8.22285 -6.49199 -6.21336 -3.91655 0.25993 0.64739 3.00120 3.12247 3.12487 3.21913 3.28754 3.33351 3.46279 3.63314 3.71890 3.94887 3.99423 4.19073 4.20903 4.52029 4.56603 4.65408 4.68448 4.77362 4.85102 4.98015 5.05782 5.13955 5.16889 5.22280 5.24761 5.30426 5.31826 5.38351 5.55341 5.59052 5.67128 5.78399 5.79473 5.91009 5.92262 6.02723 6.12660 6.15348 6.41096 6.65175 6.75671 6.86036 7.31287 7.60450 7.73049 8.35986 8.63718 9.24196 10.86177 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.032849 B = 0.001454 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.189036 B =19249.840051 C =19418.323998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.103 3.897 3 N -0.443 5.443 4 C 0.054 3.946 5 C 0.041 3.959 6 N -0.433 5.433 7 C 0.081 3.919 8 C 0.109 3.891 9 N -0.679 5.679 10 C 0.066 3.934 11 C -0.100 4.100 12 H 0.075 0.925 13 C -0.140 4.140 14 C 0.126 3.874 15 N -0.737 5.737 16 C 0.531 3.469 17 O -0.519 6.519 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.535 4.535 21 H 0.073 0.927 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.090 0.910 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.170 0.830 32 H 0.169 0.831 33 H 0.053 0.947 34 H 0.097 0.903 35 H 0.345 0.655 36 H 0.038 0.962 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.051 0.949 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.398 0.602 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.161 27.745 -15.898 34.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.038 4.038 3 N -0.158 5.158 4 C -0.107 4.107 5 C -0.119 4.119 6 N -0.148 5.148 7 C -0.061 4.061 8 C -0.021 4.021 9 N -0.310 5.310 10 C -0.063 4.063 11 C -0.119 4.119 12 H 0.094 0.906 13 C -0.197 4.197 14 C 0.002 3.998 15 N -0.392 5.392 16 C 0.317 3.683 17 O -0.393 6.393 18 C -0.304 4.304 19 S 0.166 5.834 20 C -0.683 4.683 21 H 0.091 0.909 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.108 0.892 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.187 0.813 32 H 0.187 0.813 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.163 0.837 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.085 0.915 43 H 0.232 0.768 44 H 0.107 0.893 45 H 0.108 0.892 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.825 26.747 -17.361 33.675 hybrid contribution 1.620 0.392 2.308 2.847 sum 12.445 27.140 -15.053 33.437 Atomic orbital electron populations 1.20771 0.87418 1.03597 1.04149 1.22136 0.98623 0.88700 0.94323 1.68345 1.08968 1.29244 1.09250 1.23795 0.90833 0.99937 0.96085 1.23731 1.01913 0.88694 0.97559 1.68244 1.08298 1.30170 1.08050 1.21926 0.90355 0.96386 0.97402 1.20793 0.98876 0.91125 0.91304 1.60463 1.26825 1.31923 1.11811 1.21938 0.99011 0.89136 0.96233 1.21338 0.99987 0.94521 0.96030 0.90636 1.21752 0.99160 0.98936 0.99848 1.21244 1.01018 0.93957 0.83614 1.45982 1.64840 1.20147 1.08221 1.20301 0.76467 0.80367 0.91148 1.90700 1.46700 1.53535 1.48371 1.23528 1.05482 1.06466 0.94922 1.85395 1.77471 1.10763 1.09815 1.22917 1.46884 1.06749 0.91789 0.90876 1.24993 0.94549 0.94963 0.99083 1.70032 1.37663 1.07808 1.34793 0.86115 0.77970 0.78303 0.83094 1.19628 1.20560 1.20577 0.89194 0.90464 0.89946 0.81326 0.81340 0.92849 0.88479 0.83683 0.94368 0.90120 0.92564 0.92975 0.91509 0.91788 0.91459 0.76824 0.89267 0.89248 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.55 9.78 36.01 0.35 -0.20 16 2 C 0.10 0.79 6.79 -82.41 -0.56 0.23 16 3 N -0.44 -3.70 10.42 -9.29 -0.10 -3.79 16 4 C 0.05 0.33 11.23 -17.37 -0.19 0.13 16 5 C 0.04 0.25 11.23 -17.37 -0.20 0.06 16 6 N -0.43 -3.58 10.42 -9.29 -0.10 -3.68 16 7 C 0.08 0.62 6.30 -82.41 -0.52 0.10 16 8 C 0.11 0.67 5.59 -4.98 -0.03 0.64 16 9 N -0.68 -4.29 5.94 -115.06 -0.68 -4.98 16 10 C 0.07 0.43 5.07 -3.83 -0.02 0.41 16 11 C -0.10 -0.75 2.57 -90.62 -0.23 -0.99 16 12 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 13 C -0.14 -1.06 8.95 37.16 0.33 -0.73 16 14 C 0.13 1.39 5.06 -4.04 -0.02 1.37 16 15 N -0.74 -9.61 5.28 -60.30 -0.32 -9.93 16 16 C 0.53 9.89 7.85 -10.98 -0.09 9.80 16 17 O -0.52 -11.82 15.86 5.56 0.09 -11.73 16 18 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 19 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 20 C -0.54 -15.30 9.50 30.94 0.29 -15.00 16 21 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 22 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 23 N -0.87 -26.22 13.22 55.49 0.73 -25.49 16 24 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 25 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.33 5.95 -51.93 -0.31 0.02 16 31 H 0.17 0.48 8.06 -52.49 -0.42 0.05 16 32 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.10 0.47 5.94 -51.93 -0.31 0.16 16 35 H 0.35 2.36 8.72 -39.29 -0.34 2.02 16 36 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.41 7.18 -51.93 -0.37 0.04 16 40 H 0.07 0.50 7.75 -51.93 -0.40 0.10 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.40 4.10 7.65 -40.82 -0.31 3.79 16 44 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 45 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 46 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 399.16 15.07 6.02 6.02 Total: -1.00 -36.21 399.16 -9.43 -45.64 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -7.09 Total: 0.45 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.75 Total: -5.05 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: -0.46 Total: -47.87 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.21 -9.43 -45.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753619248.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.409 kcal (2) G-P(sol) polarization free energy of solvation -36.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds