Wall clock time and date at job start Tue Mar 31 2020 21:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32153 * 120.00312 * 2 1 4 4 C 1.32126 * 120.00573 * 180.27162 * 3 2 1 5 5 C 1.38391 * 119.99243 * 359.73738 * 4 3 2 6 6 N 1.32131 * 119.99928 * 359.97438 * 5 4 3 7 7 C 1.32148 * 119.99886 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99857 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.47010 * 90.00427 * 8 7 6 10 10 C 1.46898 * 110.99934 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47390 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.46881 * 54.99442 * 11 10 9 13 13 C 1.53004 * 109.47024 * 295.00117 * 11 10 9 14 14 C 1.52997 * 109.47504 * 174.99803 * 11 10 9 15 15 N 1.46505 * 109.47212 * 184.99959 * 14 11 10 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 11 17 17 O 1.21280 * 120.00597 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99622 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.47156 * 180.02562 * 18 16 15 20 20 C 1.76204 * 100.00151 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99845 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00054 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00190 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99981 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47522 * 90.00063 * 24 22 20 26 26 H 1.48504 * 109.47097 * 210.00185 * 24 22 20 27 27 H 1.48507 * 109.47328 * 329.99912 * 24 22 20 28 28 H 1.08994 * 109.47457 * 270.24628 * 1 2 3 29 29 H 1.09004 * 109.47131 * 30.24899 * 1 2 3 30 30 H 1.08996 * 109.47167 * 150.24109 * 1 2 3 31 31 H 1.07996 * 120.00739 * 179.75380 * 4 3 2 32 32 H 1.08003 * 120.00546 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47103 * 330.00240 * 8 7 6 34 34 H 1.09001 * 109.47094 * 210.00229 * 8 7 6 35 35 H 1.00893 * 111.00632 * 56.04114 * 9 8 7 36 36 H 1.09003 * 109.47230 * 59.99766 * 10 9 8 37 37 H 1.08998 * 109.46947 * 299.99824 * 10 9 8 38 38 H 1.09001 * 109.46917 * 180.02562 * 13 11 10 39 39 H 1.09004 * 109.46741 * 299.99412 * 13 11 10 40 40 H 1.09000 * 109.47403 * 59.99547 * 13 11 10 41 41 H 1.09002 * 109.47153 * 64.99951 * 14 11 10 42 42 H 1.09001 * 109.46832 * 305.00142 * 14 11 10 43 43 H 0.96996 * 119.99606 * 0.02562 * 15 14 11 44 44 H 1.09001 * 109.47380 * 300.00190 * 18 16 15 45 45 H 1.09002 * 109.47060 * 60.00278 * 18 16 15 46 46 H 0.96997 * 120.00635 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1444 0.0000 4 6 3.4890 1.1445 -0.0054 5 6 4.1809 -0.0540 -0.0056 6 7 3.5202 -1.1983 0.0001 7 6 2.1987 -1.1981 0.0056 8 6 1.4451 -2.5032 0.0116 9 7 1.2058 -2.9241 1.3985 10 6 0.4722 -4.1960 1.4435 11 6 0.2429 -4.6012 2.9009 12 1 -0.2597 -3.7906 3.4286 13 6 1.5895 -4.8868 3.5687 14 6 -0.6275 -5.8585 2.9498 15 7 -0.9461 -6.1780 4.3437 16 6 -1.7077 -7.2520 4.6316 17 8 -2.1288 -7.9543 3.7371 18 6 -2.0349 -7.5809 6.0654 19 16 -3.0648 -9.0683 6.1233 20 6 -3.2901 -9.2169 7.8646 21 1 -2.8396 -8.4961 8.5308 22 6 -4.0458 -10.2608 8.3799 23 7 -4.2138 -10.3722 9.6807 24 14 -4.8233 -11.5086 7.2277 25 1 -3.8784 -12.6322 7.0041 26 1 -6.0758 -12.0283 7.8331 27 1 -5.1341 -10.8575 5.9296 28 1 -0.3634 0.0044 1.0276 29 1 -0.3633 0.8878 -0.5177 30 1 -0.3633 -0.8921 -0.5101 31 1 4.0291 2.0797 -0.0094 32 1 5.2609 -0.0542 -0.0105 33 1 2.0320 -3.2640 -0.5030 34 1 0.4906 -2.3739 -0.4987 35 1 0.7191 -2.2071 1.9152 36 1 1.0527 -4.9684 0.9390 37 1 -0.4890 -4.0788 0.9431 38 1 1.4261 -5.1760 4.6069 39 1 2.0921 -5.6975 3.0410 40 1 2.2096 -3.9911 3.5339 41 1 -0.0876 -6.6919 2.5003 42 1 -1.5505 -5.6831 2.3971 43 1 -0.6096 -5.6161 5.0591 44 1 -1.1118 -7.7569 6.6177 45 1 -2.5743 -6.7474 6.5154 46 1 -4.7422 -11.1015 10.0409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753619249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:15 Heat of formation + Delta-G solvation = 0.028047 kcal Electronic energy + Delta-G solvation = -25166.907429 eV Core-core repulsion = 21410.470392 eV Total energy + Delta-G solvation = -3756.437036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.70256 -39.43979 -37.84579 -35.73147 -35.00259 -33.64746 -32.43763 -32.03468 -29.51596 -28.79935 -27.52093 -26.43540 -25.59787 -24.31560 -23.53709 -22.66377 -20.76139 -20.36476 -18.39521 -17.87941 -17.07893 -16.49542 -16.44307 -16.19707 -15.89229 -15.76247 -15.31294 -14.97539 -14.77079 -14.62626 -14.31376 -13.84057 -13.56958 -13.48326 -13.28547 -13.24609 -12.87739 -12.79670 -12.67266 -12.64858 -12.39357 -12.01697 -11.92026 -11.54489 -11.34739 -11.27519 -11.22323 -11.07619 -11.00413 -10.59214 -9.85553 -9.64948 -9.55075 -9.50720 -9.01608 -8.96253 -8.92256 -8.49673 -6.91396 -6.28609 -4.00340 0.21363 0.63631 2.76291 2.99027 3.05222 3.30453 3.34228 3.45299 3.50800 3.57963 3.65590 3.83215 3.96197 4.16003 4.33490 4.48114 4.52823 4.58111 4.64367 4.71336 4.76898 4.78615 4.84477 4.95737 5.10363 5.10625 5.14627 5.19703 5.26883 5.30497 5.37009 5.42644 5.60990 5.70594 5.76377 5.78813 5.85610 5.97404 6.02248 6.12608 6.37358 6.55269 6.78369 6.80512 7.29984 7.62046 7.94412 8.41950 8.50335 9.17616 10.80628 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.034764 B = 0.001492 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.244473 B =18764.368117 C =18837.048643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.084 3.916 3 N -0.440 5.440 4 C 0.052 3.948 5 C 0.044 3.956 6 N -0.417 5.417 7 C 0.085 3.915 8 C 0.108 3.892 9 N -0.677 5.677 10 C 0.067 3.933 11 C -0.100 4.100 12 H 0.076 0.924 13 C -0.140 4.140 14 C 0.127 3.873 15 N -0.735 5.735 16 C 0.530 3.470 17 O -0.521 6.521 18 C -0.124 4.124 19 S -0.142 6.142 20 C -0.522 4.522 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.095 0.905 34 H 0.057 0.943 35 H 0.340 0.660 36 H 0.081 0.919 37 H 0.038 0.962 38 H 0.051 0.949 39 H 0.055 0.945 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.064 0.936 43 H 0.399 0.601 44 H 0.097 0.903 45 H 0.097 0.903 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.280 24.284 -21.015 35.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.057 4.057 3 N -0.155 5.155 4 C -0.108 4.108 5 C -0.116 4.116 6 N -0.132 5.132 7 C -0.056 4.056 8 C -0.021 4.021 9 N -0.308 5.308 10 C -0.062 4.062 11 C -0.119 4.119 12 H 0.094 0.906 13 C -0.198 4.198 14 C 0.002 3.998 15 N -0.389 5.389 16 C 0.316 3.684 17 O -0.395 6.395 18 C -0.275 4.275 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.187 0.813 32 H 0.188 0.812 33 H 0.113 0.887 34 H 0.075 0.925 35 H 0.158 0.842 36 H 0.099 0.901 37 H 0.056 0.944 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.234 0.766 44 H 0.115 0.885 45 H 0.115 0.885 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.111 22.691 -22.301 35.222 hybrid contribution -0.369 0.919 0.993 1.403 sum 14.743 23.611 -21.308 35.055 Atomic orbital electron populations 1.20828 0.87833 1.04226 1.03792 1.22150 0.98391 0.89139 0.95971 1.68310 1.09072 1.29076 1.09071 1.23808 0.90739 1.00043 0.96227 1.23818 1.02057 0.88683 0.97029 1.68284 1.08118 1.29723 1.07038 1.21905 0.90788 0.95762 0.97151 1.20794 0.97826 0.92398 0.91103 1.60365 1.53098 1.05629 1.11704 1.21941 0.96418 0.91650 0.96236 1.21341 0.97174 0.97285 0.96077 0.90583 1.21756 0.95873 1.02308 0.99821 1.21260 0.98657 0.96491 0.83407 1.45939 1.54575 1.30075 1.08358 1.20268 0.77320 0.79763 0.91052 1.90697 1.51373 1.49070 1.48402 1.23280 1.04723 1.04302 0.95182 1.84783 1.64384 1.30758 1.11671 1.22324 1.38616 1.16983 0.89018 0.89394 1.24708 0.94775 0.96864 0.94930 1.69935 1.38860 1.31887 1.11022 0.86733 0.79734 0.82548 0.82822 1.19205 1.19946 1.15935 0.89697 0.89867 0.89975 0.81268 0.81237 0.88693 0.92516 0.84174 0.90063 0.94399 0.92950 0.92582 0.91411 0.91405 0.91721 0.76640 0.88509 0.88501 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.49 9.78 36.00 0.35 -0.13 16 2 C 0.08 0.60 6.79 -82.42 -0.56 0.04 16 3 N -0.44 -3.51 10.42 -9.29 -0.10 -3.60 16 4 C 0.05 0.31 11.23 -17.37 -0.19 0.11 16 5 C 0.04 0.27 11.23 -17.37 -0.19 0.08 16 6 N -0.42 -3.55 10.42 -9.28 -0.10 -3.65 16 7 C 0.09 0.64 6.30 -82.41 -0.52 0.12 16 8 C 0.11 0.65 5.59 -4.97 -0.03 0.62 16 9 N -0.68 -4.19 5.94 -115.06 -0.68 -4.87 16 10 C 0.07 0.41 5.07 -3.83 -0.02 0.40 16 11 C -0.10 -0.71 2.57 -90.62 -0.23 -0.95 16 12 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 13 C -0.14 -1.10 8.95 37.16 0.33 -0.77 16 14 C 0.13 1.30 5.06 -4.04 -0.02 1.28 16 15 N -0.73 -9.00 5.28 -60.29 -0.32 -9.32 16 16 C 0.53 9.30 7.85 -10.99 -0.09 9.21 16 17 O -0.52 -11.18 15.86 5.56 0.09 -11.09 16 18 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 19 S -0.14 -3.61 18.55 -107.50 -1.99 -5.61 16 20 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 21 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 22 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 23 N -0.88 -26.58 13.97 55.49 0.78 -25.80 16 24 Si 0.86 21.81 27.74 -169.99 -4.71 17.09 16 25 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.25 5.95 -51.93 -0.31 -0.06 16 31 H 0.17 0.45 8.06 -52.49 -0.42 0.02 16 32 H 0.17 0.52 8.06 -52.48 -0.42 0.09 16 33 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.24 5.94 -51.93 -0.31 -0.07 16 35 H 0.34 1.89 8.72 -39.30 -0.34 1.54 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.05 0.42 7.18 -51.93 -0.37 0.04 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.55 7.75 -51.93 -0.40 0.15 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.40 3.85 7.65 -40.82 -0.31 3.54 16 44 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 45 H 0.10 1.73 8.14 -51.92 -0.42 1.30 16 46 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 396.47 15.07 5.97 5.97 Total: -1.00 -36.31 396.47 -8.92 -45.23 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.12 Total: -0.15 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -0.73 Total: -4.20 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.42 Total: -47.25 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.71 Total: 17.09 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.31 -8.92 -45.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753619249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.259 kcal (2) G-P(sol) polarization free energy of solvation -36.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds