Wall clock time and date at job start Tue Mar 31 2020 21:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32153 * 120.00312 * 2 1 4 4 C 1.32126 * 120.00573 * 180.27162 * 3 2 1 5 5 C 1.38391 * 119.99243 * 359.73738 * 4 3 2 6 6 N 1.32131 * 119.99928 * 359.97438 * 5 4 3 7 7 C 1.32148 * 119.99886 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99857 * 179.97438 * 7 6 5 9 9 N 1.46898 * 109.47010 * 90.00427 * 8 7 6 10 10 C 1.46898 * 110.99934 * 180.02562 * 9 8 7 11 11 C 1.52997 * 109.47390 * 179.97438 * 10 9 8 12 12 H 1.09004 * 109.46881 * 54.99442 * 11 10 9 13 13 C 1.53004 * 109.47024 * 295.00117 * 11 10 9 14 14 C 1.52997 * 109.47504 * 174.99803 * 11 10 9 15 15 N 1.46505 * 109.47212 * 184.99959 * 14 11 10 16 16 C 1.34771 * 119.99622 * 179.97438 * 15 14 11 17 17 O 1.21280 * 120.00597 * 0.02562 * 16 15 14 18 18 C 1.50701 * 119.99622 * 179.97438 * 16 15 14 19 19 S 1.81002 * 109.47156 * 180.02562 * 18 16 15 20 20 C 1.76204 * 100.00151 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99845 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00054 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00190 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 119.99981 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47522 * 90.00063 * 24 22 20 26 26 H 1.48504 * 109.47097 * 210.00185 * 24 22 20 27 27 H 1.48507 * 109.47328 * 329.99912 * 24 22 20 28 28 H 1.08994 * 109.47457 * 270.24628 * 1 2 3 29 29 H 1.09004 * 109.47131 * 30.24899 * 1 2 3 30 30 H 1.08996 * 109.47167 * 150.24109 * 1 2 3 31 31 H 1.07996 * 120.00739 * 179.75380 * 4 3 2 32 32 H 1.08003 * 120.00546 * 179.97438 * 5 4 3 33 33 H 1.08999 * 109.47103 * 330.00240 * 8 7 6 34 34 H 1.09001 * 109.47094 * 210.00229 * 8 7 6 35 35 H 1.00893 * 111.00632 * 56.04114 * 9 8 7 36 36 H 1.09003 * 109.47230 * 59.99766 * 10 9 8 37 37 H 1.08998 * 109.46947 * 299.99824 * 10 9 8 38 38 H 1.09001 * 109.46917 * 180.02562 * 13 11 10 39 39 H 1.09004 * 109.46741 * 299.99412 * 13 11 10 40 40 H 1.09000 * 109.47403 * 59.99547 * 13 11 10 41 41 H 1.09002 * 109.47153 * 64.99951 * 14 11 10 42 42 H 1.09001 * 109.46832 * 305.00142 * 14 11 10 43 43 H 0.96996 * 119.99606 * 0.02562 * 15 14 11 44 44 H 1.09001 * 109.47380 * 300.00190 * 18 16 15 45 45 H 1.09002 * 109.47060 * 60.00278 * 18 16 15 46 46 H 0.96997 * 120.00635 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1444 0.0000 4 6 3.4890 1.1445 -0.0054 5 6 4.1809 -0.0540 -0.0056 6 7 3.5202 -1.1983 0.0001 7 6 2.1987 -1.1981 0.0056 8 6 1.4451 -2.5032 0.0116 9 7 1.2058 -2.9241 1.3985 10 6 0.4722 -4.1960 1.4435 11 6 0.2429 -4.6012 2.9009 12 1 -0.2597 -3.7906 3.4286 13 6 1.5895 -4.8868 3.5687 14 6 -0.6275 -5.8585 2.9498 15 7 -0.9461 -6.1780 4.3437 16 6 -1.7077 -7.2520 4.6316 17 8 -2.1288 -7.9543 3.7371 18 6 -2.0349 -7.5809 6.0654 19 16 -3.0648 -9.0683 6.1233 20 6 -3.2901 -9.2169 7.8646 21 1 -2.8396 -8.4961 8.5308 22 6 -4.0458 -10.2608 8.3799 23 7 -4.2138 -10.3722 9.6807 24 14 -4.8233 -11.5086 7.2277 25 1 -3.8784 -12.6322 7.0041 26 1 -6.0758 -12.0283 7.8331 27 1 -5.1341 -10.8575 5.9296 28 1 -0.3634 0.0044 1.0276 29 1 -0.3633 0.8878 -0.5177 30 1 -0.3633 -0.8921 -0.5101 31 1 4.0291 2.0797 -0.0094 32 1 5.2609 -0.0542 -0.0105 33 1 2.0320 -3.2640 -0.5030 34 1 0.4906 -2.3739 -0.4987 35 1 0.7191 -2.2071 1.9152 36 1 1.0527 -4.9684 0.9390 37 1 -0.4890 -4.0788 0.9431 38 1 1.4261 -5.1760 4.6069 39 1 2.0921 -5.6975 3.0410 40 1 2.2096 -3.9911 3.5339 41 1 -0.0876 -6.6919 2.5003 42 1 -1.5505 -5.6831 2.3971 43 1 -0.6096 -5.6161 5.0591 44 1 -1.1118 -7.7569 6.6177 45 1 -2.5743 -6.7474 6.5154 46 1 -4.7422 -11.1015 10.0409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753619249.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:14 Heat of formation + Delta-G solvation = -27.844712 kcal Electronic energy + Delta-G solvation = -25168.116082 eV Core-core repulsion = 21410.470392 eV Total energy + Delta-G solvation = -3757.645690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.15910 -40.71111 -38.54240 -36.50466 -35.48319 -34.67252 -34.43930 -32.78429 -30.86522 -29.21935 -28.02488 -27.89324 -27.18454 -24.98622 -23.99220 -23.12094 -21.79641 -21.33244 -19.85237 -18.86634 -17.91491 -17.47629 -17.39435 -17.07052 -16.82062 -16.67775 -16.44448 -16.15549 -15.79422 -15.38214 -15.26578 -14.94331 -14.87202 -14.56014 -14.22840 -13.88159 -13.80670 -13.59191 -13.42011 -13.34352 -13.17849 -13.10475 -12.99821 -12.80393 -12.66378 -12.50043 -12.08296 -11.96235 -11.93141 -11.82333 -11.70702 -11.16631 -10.99577 -10.52987 -10.10618 -10.07246 -10.01285 -9.38150 -8.98892 -8.51030 -6.21869 -0.22854 0.14879 1.00097 1.32131 1.47566 1.56955 1.58740 2.22911 2.27192 2.61841 2.73175 2.87312 3.03788 3.19134 3.33512 3.51588 3.75753 3.83578 3.89184 4.02959 4.06086 4.15250 4.24374 4.30687 4.38702 4.46562 4.48312 4.53288 4.62108 4.63209 4.75683 4.77382 4.82429 4.86726 4.97825 5.09222 5.12245 5.28638 5.43347 5.46216 5.51441 5.71124 5.91784 6.11843 6.35270 6.36463 6.48847 6.84197 6.94214 7.21344 8.61347 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.034764 B = 0.001492 C = 0.001486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.244473 B =18764.368117 C =18837.048643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.075 3.925 3 N -0.467 5.467 4 C 0.051 3.949 5 C 0.038 3.962 6 N -0.448 5.448 7 C 0.073 3.927 8 C 0.113 3.887 9 N -0.682 5.682 10 C 0.072 3.928 11 C -0.085 4.085 12 H 0.090 0.910 13 C -0.137 4.137 14 C 0.126 3.874 15 N -0.710 5.710 16 C 0.534 3.466 17 O -0.564 6.564 18 C -0.112 4.112 19 S -0.176 6.176 20 C -0.530 4.530 21 H 0.062 0.938 22 C 0.046 3.954 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.263 1.263 26 H -0.259 1.259 27 H -0.237 1.237 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.199 0.801 32 H 0.196 0.804 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.345 0.655 36 H 0.075 0.925 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.064 0.936 43 H 0.415 0.585 44 H 0.112 0.888 45 H 0.114 0.886 46 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.700 25.581 -22.202 37.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.065 4.065 3 N -0.182 5.182 4 C -0.109 4.109 5 C -0.122 4.122 6 N -0.163 5.163 7 C -0.068 4.068 8 C -0.017 4.017 9 N -0.314 5.314 10 C -0.058 4.058 11 C -0.104 4.104 12 H 0.109 0.891 13 C -0.195 4.195 14 C 0.002 3.998 15 N -0.363 5.363 16 C 0.320 3.680 17 O -0.443 6.443 18 C -0.263 4.263 19 S 0.050 5.950 20 C -0.678 4.678 21 H 0.080 0.920 22 C -0.159 4.159 23 N -0.555 5.555 24 Si 0.736 3.264 25 H -0.187 1.187 26 H -0.183 1.183 27 H -0.160 1.160 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.114 0.886 31 H 0.216 0.784 32 H 0.213 0.787 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.164 0.836 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.082 0.918 43 H 0.253 0.747 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.556 24.036 -23.475 37.024 hybrid contribution -0.336 0.697 1.356 1.561 sum 15.219 24.734 -22.119 36.505 Atomic orbital electron populations 1.20892 0.86286 1.04811 1.04471 1.22492 0.99517 0.88875 0.95644 1.68355 1.10156 1.29677 1.10051 1.24313 0.90372 1.01250 0.95009 1.24287 1.03326 0.88247 0.96320 1.68278 1.08909 1.31066 1.08065 1.22093 0.90734 0.96396 0.97562 1.20768 0.98373 0.91538 0.90979 1.60300 1.53312 1.05713 1.12088 1.21852 0.96925 0.91609 0.95376 1.21219 0.96174 0.96019 0.97035 0.89149 1.21721 0.96093 1.01933 0.99708 1.21401 0.99092 0.97598 0.81687 1.45730 1.52330 1.28233 1.10056 1.19925 0.77838 0.80665 0.89596 1.90688 1.53572 1.50935 1.49077 1.23281 1.04246 1.01539 0.97244 1.84701 1.66471 1.35000 1.08784 1.22475 1.38170 1.16394 0.90742 0.91976 1.25559 0.95317 0.98703 0.96344 1.70013 1.39888 1.32978 1.12609 0.85865 0.79464 0.80184 0.80838 1.18737 1.18316 1.16041 0.88849 0.90057 0.88586 0.78415 0.78691 0.89703 0.90646 0.83604 0.90655 0.93260 0.92955 0.93460 0.91485 0.92338 0.91778 0.74747 0.86964 0.86786 0.91376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.78 71.23 0.70 -0.10 16 2 C 0.07 0.99 6.79 42.54 0.29 1.28 16 3 N -0.47 -6.99 10.42 -183.30 -1.91 -8.90 16 4 C 0.05 0.53 11.23 84.69 0.95 1.48 16 5 C 0.04 0.42 11.23 84.68 0.95 1.37 16 6 N -0.45 -7.32 10.42 -183.28 -1.91 -9.23 16 7 C 0.07 1.03 6.30 42.54 0.27 1.29 16 8 C 0.11 1.20 5.59 85.56 0.48 1.67 16 9 N -0.68 -7.21 5.94 -517.94 -3.08 -10.29 16 10 C 0.07 0.74 5.07 86.30 0.44 1.18 16 11 C -0.09 -1.02 2.57 -10.79 -0.03 -1.05 16 12 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 13 C -0.14 -1.89 8.95 71.98 0.64 -1.25 16 14 C 0.13 2.34 5.06 86.38 0.44 2.77 16 15 N -0.71 -15.73 5.28 -463.06 -2.45 -18.18 16 16 C 0.53 17.89 7.85 87.66 0.69 18.58 16 17 O -0.56 -23.73 15.86 -3.03 -0.05 -23.78 16 18 C -0.11 -4.16 6.16 71.24 0.44 -3.72 16 19 S -0.18 -8.87 18.55 -56.49 -1.05 -9.92 16 20 C -0.53 -30.86 10.04 67.95 0.68 -30.18 16 21 H 0.06 3.81 8.03 -2.91 -0.02 3.78 16 22 C 0.05 2.71 5.50 84.86 0.47 3.18 16 23 N -0.92 -55.80 13.97 21.65 0.30 -55.50 16 24 Si 0.91 44.96 27.74 68.60 1.90 46.86 16 25 H -0.26 -12.61 7.11 99.48 0.71 -11.91 16 26 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 27 H -0.24 -11.59 6.74 99.48 0.67 -10.92 16 28 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.10 0.40 5.95 -2.39 -0.01 0.38 16 31 H 0.20 0.65 8.06 -2.91 -0.02 0.63 16 32 H 0.20 0.87 8.06 -2.91 -0.02 0.85 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 34 H 0.08 0.49 5.94 -2.39 -0.01 0.47 16 35 H 0.35 3.08 8.72 -89.70 -0.78 2.29 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.05 0.71 7.18 -2.39 -0.02 0.70 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.97 7.75 -2.39 -0.02 0.95 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.42 6.75 7.65 -92.71 -0.71 6.04 16 44 H 0.11 3.83 8.14 -2.40 -0.02 3.81 16 45 H 0.11 3.85 8.14 -2.39 -0.02 3.83 16 46 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -79.08 396.47 -1.36 -80.44 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -0.53 Total: 11.97 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: 7.40 Total: -3.47 kcal Atomic # 7 Polarization: -93.05 SS G_CDS: -9.04 Total: -102.10 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.05 Total: -23.78 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.90 Total: 46.86 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.05 Total: -9.92 kcal Total: -79.08 -1.36 -80.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753619249.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.593 kcal (2) G-P(sol) polarization free energy of solvation -79.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds