Wall clock time and date at job start Tue Mar 31 2020 20:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38620 * 120.44714 * 2 1 4 4 C 1.38570 * 118.40098 * 180.02562 * 3 2 1 5 5 N 1.32354 * 119.10587 * 359.97438 * 4 3 2 6 6 C 1.31788 * 120.81717 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.12023 * 180.02562 * 6 5 4 8 8 N 1.46894 * 109.47369 * 89.99961 * 7 6 5 9 9 C 1.46909 * 111.00227 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.46968 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47367 * 65.00072 * 10 9 8 12 12 C 1.53005 * 109.46627 * 184.99903 * 10 9 8 13 13 N 1.46498 * 109.47407 * 304.99439 * 10 9 8 14 14 C 1.46498 * 120.00263 * 300.00818 * 13 10 9 15 15 C 1.34773 * 119.99863 * 120.00029 * 13 10 9 16 16 O 1.21288 * 120.00222 * 0.02562 * 15 13 10 17 17 C 1.50702 * 120.00162 * 180.02562 * 15 13 10 18 18 S 1.80999 * 109.47188 * 180.02562 * 17 15 13 19 19 C 1.76204 * 99.99922 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00079 * 0.02562 * 19 18 17 21 21 C 1.38795 * 119.99913 * 180.02562 * 19 18 17 22 22 N 1.31630 * 120.00274 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00094 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47104 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47590 * 119.99884 * 23 21 19 26 26 H 1.48500 * 109.47507 * 240.00007 * 23 21 19 27 27 N 1.31810 * 121.75378 * 359.70960 * 6 5 4 28 28 H 1.09001 * 109.46953 * 90.00117 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99715 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00345 * 1 2 3 31 31 H 1.08007 * 120.80019 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.45342 * 179.97438 * 4 3 2 33 33 H 1.09008 * 109.46784 * 209.99600 * 7 6 5 34 34 H 1.08994 * 109.47501 * 329.99184 * 7 6 5 35 35 H 1.00899 * 111.00064 * 303.94888 * 8 7 6 36 36 H 1.08998 * 109.46426 * 299.99920 * 9 8 7 37 37 H 1.08995 * 109.46616 * 59.99516 * 9 8 7 38 38 H 1.09003 * 109.46961 * 179.97438 * 12 10 9 39 39 H 1.08997 * 109.47291 * 300.00136 * 12 10 9 40 40 H 1.09002 * 109.47251 * 60.00232 * 12 10 9 41 41 H 1.09006 * 109.47577 * 89.99592 * 14 13 10 42 42 H 1.09003 * 109.47451 * 209.99590 * 14 13 10 43 43 H 1.09002 * 109.47154 * 329.99836 * 14 13 10 44 44 H 1.08998 * 109.47268 * 300.00505 * 17 15 13 45 45 H 1.09000 * 109.46932 * 60.00580 * 17 15 13 46 46 H 0.97003 * 120.00290 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5943 1.1456 -0.0005 5 7 4.1964 -0.0331 -0.0005 6 6 3.4957 -1.1492 -0.0005 7 6 4.2206 -2.4703 0.0001 8 7 4.4557 -2.8993 1.3852 9 6 5.1617 -4.1870 1.4250 10 6 5.3885 -4.5995 2.8807 11 1 4.4271 -4.7828 3.3605 12 6 6.2314 -5.8756 2.9237 13 7 6.0908 -3.5263 3.5887 14 6 7.4138 -3.0920 3.1336 15 6 5.5197 -2.9385 4.6586 16 8 4.4244 -3.2982 5.0356 17 6 6.2418 -1.8341 5.3865 18 16 5.2241 -1.2550 6.7668 19 6 6.2787 -0.0041 7.4208 20 1 7.2345 0.1928 6.9580 21 6 5.8812 0.7282 8.5308 22 7 4.7161 0.4886 9.0946 23 14 6.9989 2.0548 9.2238 24 1 8.2416 2.1279 8.4140 25 1 6.3007 3.3646 9.1772 26 1 7.3429 1.7272 10.6308 27 7 2.1776 -1.1407 0.0052 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6900 2.1419 -0.0004 32 1 4.1746 2.0564 -0.0010 33 1 3.6153 -3.2172 -0.5138 34 1 5.1757 -2.3609 -0.5135 35 1 4.9599 -2.1941 1.9015 36 1 4.5625 -4.9454 0.9211 37 1 6.1233 -4.0898 0.9212 38 1 6.3934 -6.1693 3.9609 39 1 5.7090 -6.6741 2.3970 40 1 7.1929 -5.6923 2.4440 41 1 7.3020 -2.2896 2.4043 42 1 7.9906 -2.7310 3.9852 43 1 7.9334 -3.9321 2.6727 44 1 7.1909 -2.2105 5.7682 45 1 6.4281 -1.0079 4.7004 46 1 4.4384 1.0002 9.8706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753678804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:58 Heat of formation + Delta-G solvation = 16.214395 kcal Electronic energy + Delta-G solvation = -26746.124977 eV Core-core repulsion = 22990.389833 eV Total energy + Delta-G solvation = -3755.735144 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.19920 -39.71188 -37.01225 -35.25603 -34.41960 -32.92683 -32.40637 -31.75202 -28.87143 -28.63611 -27.52303 -26.76569 -25.46588 -24.45232 -23.44575 -21.91642 -21.45169 -18.92211 -17.88223 -17.67323 -16.87333 -16.70699 -15.97959 -15.82868 -15.42331 -15.26718 -15.06339 -14.78773 -14.40240 -14.11559 -14.02451 -13.43572 -13.28996 -13.18969 -13.11395 -12.96845 -12.72379 -12.53709 -12.40747 -12.31579 -12.14956 -12.10967 -11.83859 -11.53383 -11.06066 -11.01765 -10.98130 -10.86917 -10.72678 -10.64412 -9.76766 -9.63495 -9.35900 -9.24227 -9.05275 -8.61793 -8.40519 -8.17748 -6.46309 -6.19400 -3.89227 0.71863 0.95869 2.98076 3.15320 3.22292 3.27284 3.32052 3.41506 3.65400 3.71996 3.92730 4.22368 4.23762 4.32656 4.75128 4.78232 4.91510 4.99913 5.04301 5.09619 5.15515 5.15794 5.16812 5.23038 5.24870 5.27937 5.40009 5.44173 5.46418 5.48148 5.56655 5.65184 5.68225 5.74213 5.75021 5.93860 6.03656 6.16200 6.17451 6.26000 6.72162 6.83040 6.91008 7.20996 7.60837 7.62767 7.99407 8.37590 8.66301 9.25903 10.88047 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008248 B = 0.003424 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3393.931288 B = 8176.794776 C =10428.653327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.175 3.825 3 C -0.230 4.230 4 C 0.152 3.848 5 N -0.521 5.521 6 C 0.326 3.674 7 C 0.131 3.869 8 N -0.675 5.675 9 C 0.056 3.944 10 C 0.137 3.863 11 H 0.110 0.890 12 C -0.159 4.159 13 N -0.620 5.620 14 C 0.077 3.923 15 C 0.535 3.465 16 O -0.509 6.509 17 C -0.149 4.149 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.917 3.083 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.500 5.500 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.147 0.853 32 H 0.169 0.831 33 H 0.097 0.903 34 H 0.055 0.945 35 H 0.350 0.650 36 H 0.084 0.916 37 H 0.033 0.967 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.056 0.944 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.082 -4.662 -22.933 23.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.029 3.971 3 C -0.252 4.252 4 C -0.013 4.013 5 N -0.236 5.236 6 C 0.058 3.942 7 C 0.000 4.000 8 N -0.309 5.309 9 C -0.075 4.075 10 C 0.033 3.967 11 H 0.128 0.872 12 C -0.218 4.218 13 N -0.358 5.358 14 C -0.066 4.066 15 C 0.322 3.678 16 O -0.382 6.382 17 C -0.300 4.300 18 S 0.166 5.834 19 C -0.682 4.682 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 N -0.215 5.215 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.165 0.835 32 H 0.186 0.814 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.169 0.831 36 H 0.102 0.898 37 H 0.051 0.949 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.105 0.895 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.821 -6.299 -22.153 23.103 hybrid contribution 2.588 2.620 -0.242 3.691 sum 0.768 -3.680 -22.395 22.708 Atomic orbital electron populations 1.20797 0.87768 1.04455 1.03417 1.21801 0.97748 0.88217 0.89343 1.22775 0.96672 1.00599 1.05203 1.23210 0.92252 0.96099 0.89781 1.68217 1.41959 0.98937 1.14530 1.22970 0.86769 0.94039 0.90436 1.20553 0.97881 0.90051 0.91494 1.60281 1.53711 1.05628 1.11234 1.22321 0.96430 0.91928 0.96772 1.21065 0.97905 0.86338 0.91383 0.87166 1.22102 0.99995 0.96816 1.02846 1.47905 1.19037 1.37861 1.30948 1.21734 0.84405 0.99819 1.00668 1.20289 0.85826 0.82405 0.79244 1.90698 1.19923 1.62916 1.64682 1.23552 1.04095 0.98770 1.03579 1.85417 1.24886 1.44975 1.28148 1.22907 1.06077 1.22035 1.17178 0.90975 1.24981 0.95569 0.97264 0.95751 1.70033 1.19303 1.39783 1.21166 0.86138 0.80075 0.80615 0.78794 1.19627 1.20599 1.20562 1.68087 1.09574 1.30302 1.13572 0.89836 0.89642 0.90008 0.83516 0.81407 0.88518 0.92715 0.83075 0.89784 0.94884 0.91736 0.91426 0.92467 0.93254 0.90600 0.91280 0.89394 0.89525 0.92285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.22 36.01 0.37 -0.50 16 2 C 0.18 2.02 6.82 -82.24 -0.56 1.46 16 3 C -0.23 -2.30 9.86 -39.32 -0.39 -2.69 16 4 C 0.15 1.66 11.30 -17.20 -0.19 1.47 16 5 N -0.52 -6.96 10.34 -10.73 -0.11 -7.07 16 6 C 0.33 4.45 7.16 -157.19 -1.12 3.33 16 7 C 0.13 1.52 6.12 -4.98 -0.03 1.49 16 8 N -0.68 -8.94 6.48 -115.06 -0.75 -9.68 16 9 C 0.06 0.58 5.03 -3.82 -0.02 0.56 16 10 C 0.14 1.70 2.95 -67.93 -0.20 1.50 16 11 H 0.11 1.72 6.90 -51.93 -0.36 1.36 16 12 C -0.16 -1.51 9.17 37.16 0.34 -1.17 16 13 N -0.62 -8.84 1.83 -173.93 -0.32 -9.16 16 14 C 0.08 0.84 9.38 59.85 0.56 1.40 16 15 C 0.53 10.45 7.69 -10.99 -0.08 10.36 16 16 O -0.51 -12.02 15.19 5.55 0.08 -11.93 16 17 C -0.15 -3.13 4.71 36.01 0.17 -2.96 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 19 C -0.53 -15.42 9.50 30.94 0.29 -15.12 16 20 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 23 Si 0.92 21.61 29.55 -169.99 -5.02 16.58 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 N -0.50 -6.93 10.27 -6.98 -0.07 -7.00 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 31 H 0.15 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16 33 H 0.10 1.01 8.14 -51.92 -0.42 0.59 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.35 5.26 7.84 -39.29 -0.31 4.95 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.03 0.30 7.84 -51.93 -0.41 -0.11 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.46 6.66 -51.93 -0.35 0.11 16 41 H 0.05 0.51 8.13 -51.93 -0.42 0.08 16 42 H 0.08 0.84 6.44 -51.93 -0.33 0.51 16 43 H 0.07 0.57 6.43 -51.93 -0.33 0.24 16 44 H 0.09 1.70 7.40 -51.92 -0.38 1.32 16 45 H 0.09 1.71 8.11 -51.92 -0.42 1.29 16 46 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 397.26 15.07 5.99 5.99 Total: -1.00 -37.02 397.26 -9.73 -46.75 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -7.08 Total: 4.02 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -0.96 Total: 1.15 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.51 Total: -58.64 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.08 Total: -11.93 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -37.02 -9.73 -46.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753678804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.960 kcal (2) G-P(sol) polarization free energy of solvation -37.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds