Wall clock time and date at job start Tue Mar 31 2020 20:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38620 * 120.44714 * 2 1 4 4 C 1.38570 * 118.40098 * 180.02562 * 3 2 1 5 5 N 1.32354 * 119.10587 * 359.97438 * 4 3 2 6 6 C 1.31788 * 120.81717 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.12023 * 180.02562 * 6 5 4 8 8 N 1.46894 * 109.47369 * 89.99961 * 7 6 5 9 9 C 1.46909 * 111.00227 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.46968 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.47034 * 294.99345 * 10 9 8 12 12 C 1.53004 * 109.46656 * 175.00264 * 10 9 8 13 13 N 1.46498 * 109.47479 * 54.99987 * 10 9 8 14 14 C 1.46497 * 120.00025 * 59.99894 * 13 10 9 15 15 C 1.34771 * 119.99890 * 239.99592 * 13 10 9 16 16 O 1.21281 * 119.99940 * 0.02562 * 15 13 10 17 17 C 1.50699 * 119.99969 * 179.97438 * 15 13 10 18 18 S 1.81000 * 109.47451 * 180.02562 * 17 15 13 19 19 C 1.76195 * 100.00458 * 180.02562 * 18 17 15 20 20 H 1.08006 * 119.99796 * 359.97438 * 19 18 17 21 21 C 1.38796 * 120.00526 * 180.02562 * 19 18 17 22 22 N 1.31637 * 119.99727 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00331 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47085 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.46923 * 120.00070 * 23 21 19 26 26 H 1.48498 * 109.47219 * 240.00059 * 23 21 19 27 27 N 1.31810 * 121.75378 * 359.70960 * 6 5 4 28 28 H 1.09001 * 109.46953 * 90.00117 * 1 2 3 29 29 H 1.09000 * 109.47318 * 209.99715 * 1 2 3 30 30 H 1.09000 * 109.47161 * 330.00345 * 1 2 3 31 31 H 1.08007 * 120.80019 * 359.97438 * 3 2 1 32 32 H 1.07998 * 120.45342 * 179.97438 * 4 3 2 33 33 H 1.09008 * 109.46784 * 209.99600 * 7 6 5 34 34 H 1.08994 * 109.47501 * 329.99184 * 7 6 5 35 35 H 1.00899 * 111.00064 * 303.94888 * 8 7 6 36 36 H 1.08998 * 109.46426 * 299.99920 * 9 8 7 37 37 H 1.08995 * 109.46616 * 59.99516 * 9 8 7 38 38 H 1.08992 * 109.47498 * 59.99714 * 12 10 9 39 39 H 1.09004 * 109.47175 * 180.02562 * 12 10 9 40 40 H 1.09004 * 109.47037 * 299.99227 * 12 10 9 41 41 H 1.08998 * 109.47318 * 89.99572 * 14 13 10 42 42 H 1.09002 * 109.47338 * 210.00224 * 14 13 10 43 43 H 1.09003 * 109.47149 * 329.99738 * 14 13 10 44 44 H 1.09000 * 109.47235 * 300.00261 * 17 15 13 45 45 H 1.09002 * 109.47183 * 60.00506 * 17 15 13 46 46 H 0.96994 * 119.99774 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5943 1.1456 -0.0005 5 7 4.1964 -0.0331 -0.0005 6 6 3.4957 -1.1492 -0.0005 7 6 4.2206 -2.4703 0.0001 8 7 4.4557 -2.8993 1.3852 9 6 5.1617 -4.1870 1.4250 10 6 5.3885 -4.5995 2.8807 11 1 6.0605 -3.8874 3.3597 12 6 6.0110 -5.9965 2.9238 13 7 4.1065 -4.6140 3.5896 14 6 3.0284 -5.4960 3.1358 15 6 3.9190 -3.8160 4.6594 16 8 4.8113 -3.0855 5.0349 17 6 2.6001 -3.8305 5.3883 18 16 2.6597 -2.6595 6.7672 19 6 1.0391 -2.8767 7.4236 20 1 0.3592 -3.5778 6.9623 21 6 0.6358 -2.1461 8.5326 22 7 1.4639 -1.2905 9.0938 23 14 -1.0826 -2.3759 9.2280 24 1 -1.8117 -3.3877 8.4218 25 1 -0.9890 -2.8393 10.6358 26 1 -1.8130 -1.0839 9.1798 27 7 2.1776 -1.1407 0.0052 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6900 2.1419 -0.0004 32 1 4.1746 2.0564 -0.0010 33 1 3.6153 -3.2172 -0.5138 34 1 5.1757 -2.3609 -0.5135 35 1 4.9599 -2.1941 1.9015 36 1 4.5625 -4.9454 0.9211 37 1 6.1233 -4.0898 0.9212 38 1 6.9648 -5.9857 2.3964 39 1 6.1722 -6.2906 3.9610 40 1 5.3390 -6.7087 2.4449 41 1 3.1104 -6.4590 3.6396 42 1 2.0652 -5.0434 3.3714 43 1 3.1075 -5.6417 2.0584 44 1 1.8028 -3.5435 4.7026 45 1 2.4072 -4.8329 5.7706 46 1 1.1822 -0.7803 9.8691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753678805.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:01 Heat of formation + Delta-G solvation = 15.543669 kcal Electronic energy + Delta-G solvation = -26802.336541 eV Core-core repulsion = 23046.572312 eV Total energy + Delta-G solvation = -3755.764228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.19840 -39.56452 -36.97885 -35.24871 -34.41993 -32.92533 -32.37358 -31.66296 -28.85180 -28.54811 -27.51815 -26.60701 -25.43189 -24.47033 -23.44847 -21.91354 -21.40194 -18.95759 -17.84719 -17.62184 -16.84719 -16.60075 -15.93398 -15.69352 -15.45113 -15.22506 -14.81319 -14.75226 -14.49038 -14.21467 -13.94506 -13.53944 -13.20915 -13.10456 -13.05415 -12.87806 -12.67991 -12.50515 -12.41217 -12.24858 -12.19625 -11.90240 -11.84985 -11.53439 -11.03696 -10.96674 -10.94757 -10.85265 -10.69842 -10.64136 -9.72840 -9.63626 -9.36008 -9.17840 -9.02126 -8.55210 -8.29315 -8.13160 -6.41959 -6.16405 -3.85384 0.71825 0.95579 3.06927 3.23972 3.26016 3.30246 3.34795 3.41622 3.72026 3.73547 3.92479 4.25055 4.26033 4.32858 4.70397 4.78856 4.90946 5.00608 5.07228 5.14699 5.18632 5.19728 5.25123 5.26086 5.30611 5.31110 5.38101 5.44616 5.50957 5.57737 5.66469 5.68872 5.69974 5.77014 5.89853 6.00880 6.07583 6.12490 6.26011 6.27638 6.73330 6.88634 6.90974 7.20797 7.65163 7.75640 7.99308 8.41098 8.76195 9.29049 10.91160 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008065 B = 0.003589 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3470.875250 B = 7799.144540 C =10182.708854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.177 3.823 3 C -0.231 4.231 4 C 0.151 3.849 5 N -0.522 5.522 6 C 0.327 3.673 7 C 0.132 3.868 8 N -0.673 5.673 9 C 0.053 3.947 10 C 0.138 3.862 11 H 0.100 0.900 12 C -0.157 4.157 13 N -0.602 5.602 14 C 0.088 3.912 15 C 0.540 3.460 16 O -0.525 6.525 17 C -0.146 4.146 18 S -0.064 6.064 19 C -0.531 4.531 20 H 0.072 0.928 21 C 0.073 3.927 22 N -0.869 5.869 23 Si 0.917 3.083 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.500 5.500 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.147 0.853 32 H 0.168 0.832 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.350 0.650 36 H 0.077 0.923 37 H 0.041 0.959 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.086 0.914 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.300 -2.802 -23.223 23.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.031 3.969 3 C -0.253 4.253 4 C -0.015 4.015 5 N -0.237 5.237 6 C 0.058 3.942 7 C 0.001 3.999 8 N -0.305 5.305 9 C -0.077 4.077 10 C 0.033 3.967 11 H 0.118 0.882 12 C -0.216 4.216 13 N -0.337 5.337 14 C -0.055 4.055 15 C 0.328 3.672 16 O -0.400 6.400 17 C -0.297 4.297 18 S 0.162 5.838 19 C -0.680 4.680 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.504 5.504 23 Si 0.743 3.257 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 N -0.215 5.215 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.165 0.835 32 H 0.185 0.815 33 H 0.113 0.887 34 H 0.073 0.927 35 H 0.169 0.831 36 H 0.095 0.905 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.494 -2.747 -22.457 23.067 hybrid contribution -1.802 0.230 -0.249 1.834 sum 2.692 -2.517 -22.706 23.004 Atomic orbital electron populations 1.20806 0.87737 1.04592 1.03391 1.21805 0.97763 0.88197 0.89143 1.22774 0.96661 1.00620 1.05236 1.23188 0.92227 0.96083 0.89967 1.68213 1.41963 0.98941 1.14606 1.22966 0.86761 0.94018 0.90408 1.20538 0.97848 0.89984 0.91495 1.60271 1.53730 1.05376 1.11167 1.22352 0.96671 0.91728 0.96988 1.20981 0.86455 0.98023 0.91222 0.88224 1.22077 1.00551 0.96159 1.02822 1.47573 1.13731 1.42337 1.30075 1.21613 0.90759 0.93410 0.99759 1.20191 0.89212 0.78556 0.79201 1.90659 1.44135 1.39491 1.65731 1.23517 0.96907 1.05988 1.03289 1.85349 1.20056 1.49966 1.28381 1.22913 0.99491 1.28451 1.17121 0.90989 1.24979 0.98279 0.94551 0.95785 1.70039 1.35212 1.23875 1.21301 0.86142 0.82598 0.78134 0.78785 1.19606 1.20597 1.20626 1.68091 1.09553 1.30311 1.13530 0.89845 0.89564 0.89968 0.83547 0.81490 0.88664 0.92714 0.83082 0.90481 0.94110 0.91710 0.91769 0.92286 0.93399 0.90955 0.91529 0.89354 0.89610 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.22 36.01 0.37 -0.55 16 2 C 0.18 2.05 6.82 -82.24 -0.56 1.49 16 3 C -0.23 -2.28 9.86 -39.32 -0.39 -2.67 16 4 C 0.15 1.60 11.30 -17.20 -0.19 1.40 16 5 N -0.52 -6.78 10.34 -10.73 -0.11 -6.89 16 6 C 0.33 4.35 7.16 -157.19 -1.12 3.22 16 7 C 0.13 1.47 6.12 -4.98 -0.03 1.44 16 8 N -0.67 -8.45 6.21 -115.06 -0.71 -9.16 16 9 C 0.05 0.53 4.93 -3.82 -0.02 0.51 16 10 C 0.14 1.68 2.88 -67.93 -0.20 1.49 16 11 H 0.10 1.47 6.90 -51.93 -0.36 1.11 16 12 C -0.16 -1.50 9.19 37.16 0.34 -1.16 16 13 N -0.60 -8.87 2.48 -173.94 -0.43 -9.31 16 14 C 0.09 1.04 9.30 59.85 0.56 1.59 16 15 C 0.54 10.78 7.69 -10.99 -0.08 10.69 16 16 O -0.52 -12.34 15.19 5.56 0.08 -12.26 16 17 C -0.15 -3.16 4.71 36.00 0.17 -2.99 16 18 S -0.06 -1.81 20.57 -107.50 -2.21 -4.02 16 19 C -0.53 -15.53 9.50 30.94 0.29 -15.23 16 20 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.66 13.22 55.49 0.73 -25.93 16 23 Si 0.92 21.77 29.55 -169.99 -5.02 16.75 16 24 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 27 N -0.50 -6.85 10.27 -6.98 -0.07 -6.92 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 31 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 32 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 33 H 0.10 0.97 8.14 -51.92 -0.42 0.55 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.35 5.09 8.72 -39.29 -0.34 4.75 16 36 H 0.08 0.69 6.88 -51.93 -0.36 0.33 16 37 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.92 6.44 -51.93 -0.33 0.58 16 43 H 0.07 0.64 6.53 -51.93 -0.34 0.30 16 44 H 0.09 1.84 7.40 -51.92 -0.38 1.45 16 45 H 0.09 1.73 8.11 -51.92 -0.42 1.31 16 46 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 398.46 15.07 6.00 6.00 Total: -1.00 -36.95 398.46 -9.83 -46.78 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.13 Total: 3.69 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -0.96 Total: 1.26 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.60 Total: -58.21 kcal Atomic # 8 Polarization: -12.34 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Atomic # 16 Polarization: -1.81 SS G_CDS: -2.21 Total: -4.02 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.95 -9.83 -46.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753678805.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.324 kcal (2) G-P(sol) polarization free energy of solvation -36.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds