Wall clock time and date at job start Tue Mar 31 2020 20:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38624 * 120.44601 * 2 1 4 4 C 1.38572 * 118.39692 * 180.02562 * 3 2 1 5 5 N 1.32347 * 119.10848 * 359.97438 * 4 3 2 6 6 C 1.31776 * 120.81954 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.12574 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.46836 * 90.00023 * 7 6 5 9 9 C 1.46903 * 111.00007 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47301 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.47159 * 179.97438 * 10 9 8 12 12 H 1.09007 * 109.46427 * 55.00086 * 11 10 9 13 13 C 1.53001 * 109.47065 * 174.99654 * 11 10 9 14 14 N 1.46497 * 109.47036 * 294.99799 * 11 10 9 15 15 C 1.34777 * 119.99525 * 154.99621 * 14 11 10 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 11 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 11 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 14 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99674 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00584 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46793 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47282 * 119.99523 * 23 21 19 26 26 H 1.48500 * 109.47237 * 240.00020 * 23 21 19 27 27 N 1.31818 * 121.75492 * 0.27529 * 6 5 4 28 28 H 1.09010 * 109.47189 * 90.00460 * 1 2 3 29 29 H 1.09000 * 109.47364 * 210.00155 * 1 2 3 30 30 H 1.09001 * 109.47695 * 330.00530 * 1 2 3 31 31 H 1.07995 * 120.80130 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.44969 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.47171 * 330.00307 * 7 6 5 34 34 H 1.08999 * 109.47181 * 210.00019 * 7 6 5 35 35 H 1.00901 * 111.00406 * 303.95335 * 8 7 6 36 36 H 1.08994 * 109.47146 * 59.99493 * 9 8 7 37 37 H 1.09008 * 109.46497 * 300.00104 * 9 8 7 38 38 H 1.09002 * 109.47208 * 60.00104 * 10 9 8 39 39 H 1.09003 * 109.47291 * 299.99940 * 10 9 8 40 40 H 1.08998 * 109.46617 * 180.02562 * 13 11 10 41 41 H 1.09003 * 109.47371 * 300.00160 * 13 11 10 42 42 H 1.09002 * 109.46839 * 60.00194 * 13 11 10 43 43 H 0.97000 * 120.00580 * 335.00367 * 14 11 10 44 44 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 45 45 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 46 46 H 0.97003 * 120.00297 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1951 0.0000 4 6 3.5942 1.1455 -0.0005 5 7 4.1963 -0.0331 -0.0005 6 6 3.4956 -1.1491 -0.0005 7 6 4.2206 -2.4703 -0.0011 8 7 4.4566 -2.8999 1.3838 9 6 5.1636 -4.1870 1.4225 10 6 5.3903 -4.6009 2.8778 11 6 6.1260 -5.9418 2.9181 12 1 7.0464 -5.8687 2.3386 13 6 6.4631 -6.2952 4.3681 14 7 5.2709 -6.9853 2.3472 15 6 5.8240 -8.0922 1.8130 16 8 7.0295 -8.2246 1.8053 17 6 4.9441 -9.1685 1.2312 18 16 5.9752 -10.5177 0.6049 19 6 4.7255 -11.6034 0.0016 20 1 3.6844 -11.3295 0.0884 21 6 5.0789 -12.8100 -0.5863 22 7 6.3479 -13.1431 -0.6936 23 14 3.7540 -13.9606 -1.2266 24 1 2.4177 -13.3582 -0.9881 25 1 3.9473 -14.1763 -2.6831 26 1 3.8435 -15.2621 -0.5172 27 7 2.1775 -1.1407 -0.0059 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6899 2.1419 0.0004 32 1 4.1745 2.0564 -0.0001 33 1 5.1754 -2.3606 -0.5152 34 1 3.6149 -3.2169 -0.5148 35 1 4.9612 -2.1949 1.9001 36 1 6.1249 -4.0889 0.9183 37 1 4.5647 -4.9457 0.9184 38 1 4.4287 -4.6992 3.3816 39 1 5.9888 -3.8423 3.3823 40 1 6.9876 -7.2503 4.3967 41 1 7.0993 -5.5188 4.7929 42 1 5.5427 -6.3682 4.9476 43 1 4.3067 -6.8797 2.3536 44 1 4.2770 -9.5499 2.0044 45 1 4.3537 -8.7532 0.4145 46 1 6.5949 -13.9865 -1.1041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753950341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:53 Heat of formation + Delta-G solvation = -2.044190 kcal Electronic energy + Delta-G solvation = -25217.306094 eV Core-core repulsion = 21460.779198 eV Total energy + Delta-G solvation = -3756.526895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.48574 -39.41664 -37.27221 -35.56859 -34.73177 -33.16796 -32.40525 -31.67558 -29.65439 -28.87281 -28.40584 -26.31682 -25.45785 -23.81341 -22.83347 -22.16721 -21.22796 -20.24656 -18.13848 -17.81280 -16.92696 -16.51943 -16.17111 -16.02655 -15.81704 -15.34509 -14.96802 -14.78389 -14.57049 -14.40280 -14.14041 -13.75729 -13.55403 -13.38274 -13.18210 -13.14039 -12.86128 -12.79389 -12.63586 -12.47890 -12.00554 -11.86791 -11.46468 -11.33682 -11.12850 -11.05193 -10.99238 -10.94349 -10.87059 -10.72619 -9.92179 -9.77675 -9.63288 -9.32356 -9.05489 -8.85831 -8.78690 -8.19889 -6.46942 -6.19562 -3.89546 0.42850 0.66455 3.08518 3.15654 3.16291 3.23256 3.30314 3.35764 3.42062 3.65191 3.77931 4.00255 4.04125 4.22780 4.49377 4.61818 4.70141 4.81055 4.87055 4.89804 4.96522 5.03364 5.03848 5.15675 5.22307 5.30328 5.36311 5.40652 5.43904 5.45921 5.49741 5.64178 5.71105 5.75485 5.84994 5.93695 5.98104 6.11654 6.18741 6.25845 6.54660 6.62631 6.75002 6.96532 7.62377 7.72111 7.79353 8.37902 8.68516 9.26009 10.87907 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.001868 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.957572 B =14986.890231 C =16529.907319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.176 3.824 3 C -0.233 4.233 4 C 0.150 3.850 5 N -0.522 5.522 6 C 0.330 3.670 7 C 0.126 3.874 8 N -0.680 5.680 9 C 0.059 3.941 10 C -0.122 4.122 11 C 0.145 3.855 12 H 0.087 0.913 13 C -0.163 4.163 14 N -0.734 5.734 15 C 0.533 3.467 16 O -0.519 6.519 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 N -0.501 5.501 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.147 0.853 32 H 0.168 0.832 33 H 0.060 0.940 34 H 0.101 0.899 35 H 0.342 0.658 36 H 0.037 0.963 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.398 0.602 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.609 31.297 4.920 33.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.029 3.971 3 C -0.256 4.256 4 C -0.015 4.015 5 N -0.237 5.237 6 C 0.061 3.939 7 C -0.004 4.004 8 N -0.312 5.312 9 C -0.070 4.070 10 C -0.160 4.160 11 C 0.039 3.961 12 H 0.105 0.895 13 C -0.221 4.221 14 N -0.388 5.388 15 C 0.319 3.681 16 O -0.393 6.393 17 C -0.305 4.305 18 S 0.165 5.835 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 N -0.216 5.216 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.099 0.901 31 H 0.164 0.836 32 H 0.186 0.814 33 H 0.079 0.921 34 H 0.119 0.881 35 H 0.159 0.841 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.075 0.925 43 H 0.232 0.768 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.602 29.787 4.894 31.129 hybrid contribution -2.261 0.721 -0.665 2.465 sum -9.864 30.508 4.229 32.341 Atomic orbital electron populations 1.20811 0.87709 1.04252 1.03789 1.21836 0.97794 0.88200 0.89252 1.22776 0.96660 1.00575 1.05542 1.23221 0.92213 0.96128 0.89977 1.68251 1.41961 0.98919 1.14600 1.23045 0.86679 0.94068 0.90063 1.20614 0.98409 0.89949 0.91464 1.60443 1.53336 1.05598 1.11819 1.22022 0.96890 0.90810 0.97288 1.21844 1.01629 0.96214 0.96357 1.20839 0.94612 0.85946 0.94697 0.89492 1.22168 1.01663 1.02572 0.95710 1.46131 1.10059 1.20112 1.62539 1.20291 0.88987 0.81985 0.76850 1.90694 1.14875 1.77805 1.55960 1.23538 1.03264 1.00224 1.03426 1.85380 1.09662 1.12654 1.75769 1.22918 0.94107 1.05949 1.45267 0.90886 1.24995 0.96130 0.97179 0.95342 1.70032 1.15593 1.22915 1.41782 0.86120 0.80876 0.80001 0.78518 1.19609 1.20586 1.20592 1.68144 1.09615 1.30259 1.13559 0.89581 0.89640 0.90098 0.83553 0.81444 0.92150 0.88106 0.84060 0.94489 0.90083 0.90406 0.90649 0.91635 0.92019 0.92548 0.76813 0.89275 0.89292 0.92274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.51 10.22 36.00 0.37 -0.14 16 2 C 0.18 1.38 6.82 -82.24 -0.56 0.81 16 3 C -0.23 -1.39 9.86 -39.32 -0.39 -1.78 16 4 C 0.15 1.03 11.30 -17.21 -0.19 0.83 16 5 N -0.52 -5.05 10.33 -10.73 -0.11 -5.16 16 6 C 0.33 3.42 7.16 -157.19 -1.12 2.29 16 7 C 0.13 1.21 6.12 -4.97 -0.03 1.18 16 8 N -0.68 -6.25 6.49 -115.06 -0.75 -7.00 16 9 C 0.06 0.54 5.57 -3.83 -0.02 0.52 16 10 C -0.12 -1.04 5.01 -26.73 -0.13 -1.18 16 11 C 0.14 1.65 2.57 -67.93 -0.17 1.48 16 12 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 13 C -0.16 -1.80 9.48 37.16 0.35 -1.44 16 14 N -0.73 -9.67 4.53 -53.80 -0.24 -9.91 16 15 C 0.53 9.88 7.81 -10.98 -0.09 9.79 16 16 O -0.52 -11.72 15.53 5.55 0.09 -11.63 16 17 C -0.15 -3.12 6.16 36.01 0.22 -2.90 16 18 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.34 9.50 30.94 0.29 -15.05 16 20 H 0.07 1.99 7.80 -52.48 -0.41 1.58 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -26.35 13.22 55.49 0.73 -25.61 16 23 Si 0.92 21.59 29.55 -169.99 -5.02 16.57 16 24 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 N -0.50 -5.26 10.27 -6.98 -0.07 -5.33 16 28 H 0.09 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.21 8.10 -51.93 -0.42 -0.21 16 31 H 0.15 0.40 8.06 -52.49 -0.42 -0.03 16 32 H 0.17 0.59 8.06 -52.49 -0.42 0.16 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.34 2.96 8.72 -39.29 -0.34 2.62 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.08 0.83 7.75 -51.92 -0.40 0.42 16 38 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.40 4.26 8.60 -40.82 -0.35 3.90 16 44 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 405.59 15.07 6.11 6.11 Total: -1.00 -36.33 405.59 -10.42 -46.75 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.37 Total: 2.69 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -1.57 Total: -3.59 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.44 Total: -53.02 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -36.33 -10.42 -46.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753950341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.707 kcal (2) G-P(sol) polarization free energy of solvation -36.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds