Wall clock time and date at job start Tue Mar 31 2020 20:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38624 * 120.44601 * 2 1 4 4 C 1.38572 * 118.39692 * 180.02562 * 3 2 1 5 5 N 1.32347 * 119.10848 * 359.97438 * 4 3 2 6 6 C 1.31776 * 120.81954 * 0.02562 * 5 4 3 7 7 C 1.50704 * 119.12574 * 179.97438 * 6 5 4 8 8 N 1.46902 * 109.46836 * 90.00023 * 7 6 5 9 9 C 1.46903 * 111.00007 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47301 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.47159 * 179.97438 * 10 9 8 12 12 H 1.09007 * 109.46427 * 55.00086 * 11 10 9 13 13 C 1.53001 * 109.47065 * 174.99654 * 11 10 9 14 14 N 1.46497 * 109.47036 * 294.99799 * 11 10 9 15 15 C 1.34777 * 119.99525 * 154.99621 * 14 11 10 16 16 O 1.21283 * 120.00463 * 0.02562 * 15 14 11 17 17 C 1.50700 * 119.99675 * 179.72583 * 15 14 11 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 14 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99674 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00584 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46793 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47282 * 119.99523 * 23 21 19 26 26 H 1.48500 * 109.47237 * 240.00020 * 23 21 19 27 27 N 1.31818 * 121.75492 * 0.27529 * 6 5 4 28 28 H 1.09010 * 109.47189 * 90.00460 * 1 2 3 29 29 H 1.09000 * 109.47364 * 210.00155 * 1 2 3 30 30 H 1.09001 * 109.47695 * 330.00530 * 1 2 3 31 31 H 1.07995 * 120.80130 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.44969 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.47171 * 330.00307 * 7 6 5 34 34 H 1.08999 * 109.47181 * 210.00019 * 7 6 5 35 35 H 1.00901 * 111.00406 * 303.95335 * 8 7 6 36 36 H 1.08994 * 109.47146 * 59.99493 * 9 8 7 37 37 H 1.09008 * 109.46497 * 300.00104 * 9 8 7 38 38 H 1.09002 * 109.47208 * 60.00104 * 10 9 8 39 39 H 1.09003 * 109.47291 * 299.99940 * 10 9 8 40 40 H 1.08998 * 109.46617 * 180.02562 * 13 11 10 41 41 H 1.09003 * 109.47371 * 300.00160 * 13 11 10 42 42 H 1.09002 * 109.46839 * 60.00194 * 13 11 10 43 43 H 0.97000 * 120.00580 * 335.00367 * 14 11 10 44 44 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 45 45 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 46 46 H 0.97003 * 120.00297 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2094 1.1951 0.0000 4 6 3.5942 1.1455 -0.0005 5 7 4.1963 -0.0331 -0.0005 6 6 3.4956 -1.1491 -0.0005 7 6 4.2206 -2.4703 -0.0011 8 7 4.4566 -2.8999 1.3838 9 6 5.1636 -4.1870 1.4225 10 6 5.3903 -4.6009 2.8778 11 6 6.1260 -5.9418 2.9181 12 1 7.0464 -5.8687 2.3386 13 6 6.4631 -6.2952 4.3681 14 7 5.2709 -6.9853 2.3472 15 6 5.8240 -8.0922 1.8130 16 8 7.0295 -8.2246 1.8053 17 6 4.9441 -9.1685 1.2312 18 16 5.9752 -10.5177 0.6049 19 6 4.7255 -11.6034 0.0016 20 1 3.6844 -11.3295 0.0884 21 6 5.0789 -12.8100 -0.5863 22 7 6.3479 -13.1431 -0.6936 23 14 3.7540 -13.9606 -1.2266 24 1 2.4177 -13.3582 -0.9881 25 1 3.9473 -14.1763 -2.6831 26 1 3.8435 -15.2621 -0.5172 27 7 2.1775 -1.1407 -0.0059 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 1.6899 2.1419 0.0004 32 1 4.1745 2.0564 -0.0001 33 1 5.1754 -2.3606 -0.5152 34 1 3.6149 -3.2169 -0.5148 35 1 4.9612 -2.1949 1.9001 36 1 6.1249 -4.0889 0.9183 37 1 4.5647 -4.9457 0.9184 38 1 4.4287 -4.6992 3.3816 39 1 5.9888 -3.8423 3.3823 40 1 6.9876 -7.2503 4.3967 41 1 7.0993 -5.5188 4.7929 42 1 5.5427 -6.3682 4.9476 43 1 4.3067 -6.8797 2.3536 44 1 4.2770 -9.5499 2.0044 45 1 4.3537 -8.7532 0.4145 46 1 6.5949 -13.9865 -1.1041 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753950341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:52 Heat of formation + Delta-G solvation = -28.995389 kcal Electronic energy + Delta-G solvation = -25218.474785 eV Core-core repulsion = 21460.779198 eV Total energy + Delta-G solvation = -3757.695587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.05675 -40.78010 -38.19652 -36.54899 -35.31732 -34.58453 -33.88198 -32.84247 -30.56095 -29.80292 -29.31222 -27.65817 -27.02690 -24.35372 -23.67153 -22.81235 -22.27581 -21.52048 -19.83261 -18.73212 -17.95277 -17.47034 -17.34758 -16.88093 -16.69757 -16.53130 -16.33806 -16.12054 -15.80501 -15.32162 -15.13181 -14.71779 -14.65973 -14.39936 -14.25675 -14.02687 -13.76840 -13.74262 -13.47078 -13.19143 -13.15498 -13.14422 -12.92225 -12.90617 -12.57787 -12.27599 -12.14042 -11.82255 -11.72444 -11.68178 -11.54136 -11.15792 -10.88277 -10.43647 -10.26532 -10.23565 -10.07911 -9.54692 -8.65930 -8.34761 -6.12386 -0.13234 0.12801 1.27908 1.41111 1.47572 1.58955 1.65787 2.26596 2.34773 2.55142 2.83084 2.99291 3.12532 3.29858 3.33628 3.61231 3.88762 3.96825 4.00880 4.10059 4.11907 4.17105 4.29707 4.32679 4.36470 4.48374 4.52224 4.55821 4.59466 4.67808 4.69770 4.72886 4.84052 4.90734 4.92693 5.07449 5.10731 5.20257 5.33149 5.42268 5.48879 5.59615 5.81051 6.08083 6.20193 6.26576 6.56183 7.06669 7.12497 7.30001 8.74696 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012616 B = 0.001868 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.957572 B =14986.890231 C =16529.907319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.155 3.845 3 C -0.221 4.221 4 C 0.139 3.861 5 N -0.544 5.544 6 C 0.310 3.690 7 C 0.129 3.871 8 N -0.677 5.677 9 C 0.062 3.938 10 C -0.106 4.106 11 C 0.144 3.856 12 H 0.065 0.935 13 C -0.158 4.158 14 N -0.708 5.708 15 C 0.535 3.465 16 O -0.566 6.566 17 C -0.131 4.131 18 S -0.151 6.151 19 C -0.546 4.546 20 H 0.082 0.918 21 C 0.012 3.988 22 N -0.911 5.911 23 Si 0.999 3.001 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.273 1.273 27 N -0.531 5.531 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.107 0.893 31 H 0.184 0.816 32 H 0.200 0.800 33 H 0.058 0.942 34 H 0.092 0.908 35 H 0.346 0.654 36 H 0.029 0.971 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.031 0.969 41 H 0.084 0.916 42 H 0.071 0.929 43 H 0.414 0.586 44 H 0.108 0.892 45 H 0.107 0.893 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.306 33.714 5.587 36.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.010 3.990 3 C -0.242 4.242 4 C -0.025 4.025 5 N -0.259 5.259 6 C 0.042 3.958 7 C -0.001 4.001 8 N -0.309 5.309 9 C -0.067 4.067 10 C -0.144 4.144 11 C 0.039 3.961 12 H 0.084 0.916 13 C -0.217 4.217 14 N -0.362 5.362 15 C 0.321 3.679 16 O -0.444 6.444 17 C -0.282 4.282 18 S 0.076 5.924 19 C -0.694 4.694 20 H 0.100 0.900 21 C -0.192 4.192 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.199 1.199 27 N -0.247 5.247 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.125 0.875 31 H 0.201 0.799 32 H 0.217 0.783 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.164 0.836 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.114 0.886 40 H 0.051 0.949 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.251 0.749 44 H 0.126 0.874 45 H 0.126 0.874 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.345 32.262 5.585 34.337 hybrid contribution -1.456 0.176 -0.827 1.684 sum -11.801 32.438 4.758 34.844 Atomic orbital electron populations 1.20891 0.85797 1.04984 1.04522 1.22440 0.99220 0.88300 0.89089 1.23166 0.96374 1.01422 1.03271 1.23861 0.93245 0.96265 0.89139 1.68247 1.42586 0.99674 1.15431 1.23023 0.86969 0.94401 0.91416 1.20530 0.98133 0.89994 0.91486 1.60419 1.53191 1.05558 1.11770 1.21957 0.96311 0.90793 0.97663 1.21721 1.02063 0.94590 0.96061 1.20992 0.93924 0.86620 0.94583 0.91629 1.22126 1.02504 1.01599 0.95424 1.45916 1.11178 1.18626 1.60493 1.20008 0.88004 0.82834 0.77029 1.90684 1.16653 1.78925 1.58165 1.23389 1.02316 0.98135 1.04362 1.85549 1.13513 1.16466 1.76839 1.23243 0.94316 1.06408 1.45388 0.89996 1.26134 0.98713 0.99041 0.95341 1.70192 1.18113 1.23671 1.42798 0.84902 0.77870 0.77326 0.77829 1.18070 1.19907 1.19886 1.68121 1.09839 1.32010 1.14766 0.88732 0.90790 0.87455 0.79857 0.78302 0.92385 0.89014 0.83608 0.95252 0.91104 0.89239 0.88610 0.94927 0.89707 0.90953 0.74893 0.87396 0.87433 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.22 71.23 0.73 -0.07 16 2 C 0.16 2.20 6.82 42.58 0.29 2.49 16 3 C -0.22 -2.06 9.86 22.44 0.22 -1.84 16 4 C 0.14 1.63 11.30 84.69 0.96 2.59 16 5 N -0.54 -10.12 10.33 -187.85 -1.94 -12.06 16 6 C 0.31 6.40 7.16 138.75 0.99 7.40 16 7 C 0.13 2.52 6.12 85.56 0.52 3.04 16 8 N -0.68 -11.99 6.49 -517.93 -3.36 -15.35 16 9 C 0.06 1.09 5.57 86.30 0.48 1.57 16 10 C -0.11 -1.59 5.01 30.59 0.15 -1.44 16 11 C 0.14 3.13 2.57 44.99 0.12 3.25 16 12 H 0.07 1.77 7.58 -2.38 -0.02 1.75 16 13 C -0.16 -3.27 9.48 71.98 0.68 -2.58 16 14 N -0.71 -17.91 4.53 -442.52 -2.00 -19.92 16 15 C 0.54 19.95 7.81 87.66 0.68 20.63 16 16 O -0.57 -26.46 15.53 -3.04 -0.05 -26.50 16 17 C -0.13 -5.28 6.16 71.24 0.44 -4.84 16 18 S -0.15 -8.50 20.57 -56.49 -1.16 -9.67 16 19 C -0.55 -31.63 9.50 67.95 0.65 -30.98 16 20 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 21 C 0.01 0.71 5.49 84.86 0.47 1.18 16 22 N -0.91 -56.60 13.22 21.65 0.29 -56.31 16 23 Si 1.00 44.20 29.55 68.60 2.03 46.23 16 24 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 N -0.53 -11.02 10.27 -176.01 -1.81 -12.83 16 28 H 0.09 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.11 0.21 8.10 -2.39 -0.02 0.19 16 31 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 32 H 0.20 0.82 8.06 -2.91 -0.02 0.79 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.35 5.64 8.72 -89.69 -0.78 4.86 16 36 H 0.03 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.07 1.40 7.75 -2.38 -0.02 1.38 16 38 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 43 H 0.41 7.97 8.60 -92.71 -0.80 7.17 16 44 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 45 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 46 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -82.87 405.59 -1.22 -84.09 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.59 Total: 21.92 kcal Atomic # 6 Polarization: -6.99 SS G_CDS: 7.38 Total: 0.39 kcal Atomic # 7 Polarization: -107.63 SS G_CDS: -8.83 Total: -116.46 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.05 Total: -26.50 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.67 kcal Total: -82.87 -1.22 -84.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753950341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.093 kcal (2) G-P(sol) polarization free energy of solvation -82.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds