Wall clock time and date at job start Tue Mar 31 2020 21:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38389 * 120.00149 * 2 1 4 4 N 1.32123 * 120.00308 * 179.97438 * 3 2 1 5 5 C 1.32157 * 119.99541 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99512 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.46908 * 274.99348 * 6 5 4 8 8 C 1.46906 * 111.00172 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.46389 * 324.99645 * 8 7 6 10 10 C 1.52997 * 109.47302 * 84.99810 * 8 7 6 11 11 C 1.52992 * 109.47164 * 205.00386 * 8 7 6 12 12 H 1.08996 * 109.47729 * 64.99293 * 11 8 7 13 13 C 1.53001 * 109.47279 * 304.99573 * 11 8 7 14 14 N 1.46496 * 109.47128 * 184.99869 * 11 8 7 15 15 C 1.34781 * 120.00209 * 204.99948 * 14 11 8 16 16 O 1.21286 * 119.99826 * 359.97438 * 15 14 11 17 17 C 1.50695 * 120.00346 * 179.97438 * 15 14 11 18 18 S 1.81002 * 109.47318 * 179.97438 * 17 15 14 19 19 C 1.76195 * 100.00087 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00226 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00253 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99778 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00338 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46801 * 359.97438 * 23 21 19 25 25 H 1.48490 * 109.47361 * 119.99924 * 23 21 19 26 26 H 1.48502 * 109.47153 * 240.00152 * 23 21 19 27 27 C 1.38343 * 120.00451 * 0.24731 * 5 4 3 28 28 N 1.32116 * 120.00193 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47130 * 90.00327 * 1 2 3 30 30 H 1.09008 * 109.47164 * 210.00210 * 1 2 3 31 31 H 1.08999 * 109.47349 * 330.00161 * 1 2 3 32 32 H 1.08005 * 119.99968 * 0.02562 * 3 2 1 33 33 H 1.09005 * 109.46789 * 154.99752 * 6 5 4 34 34 H 1.09001 * 109.47726 * 34.99542 * 6 5 4 35 35 H 1.00896 * 111.00123 * 56.05205 * 7 6 5 36 36 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.46832 * 60.00356 * 10 8 7 38 38 H 1.09004 * 109.47261 * 300.00337 * 10 8 7 39 39 H 1.09000 * 109.47104 * 59.99686 * 13 11 8 40 40 H 1.08993 * 109.47832 * 180.02562 * 13 11 8 41 41 H 1.09001 * 109.46924 * 300.00271 * 13 11 8 42 42 H 0.96999 * 120.00528 * 24.99813 * 14 11 8 43 43 H 1.08998 * 109.47444 * 299.99922 * 17 15 14 44 44 H 1.09002 * 109.47292 * 59.99909 * 17 15 14 45 45 H 0.96991 * 119.99946 * 179.97438 * 22 21 19 46 46 H 1.07998 * 119.99938 * 179.72625 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5202 1.1985 0.0005 5 6 4.1809 0.0540 0.0005 6 6 5.6879 0.0540 0.0005 7 7 6.1775 0.1746 -1.3792 8 6 7.6460 0.1774 -1.4184 9 1 8.0318 0.6920 -0.5384 10 6 8.1587 -1.2640 -1.4321 11 6 8.1211 0.8997 -2.6806 12 1 7.8319 1.9494 -2.6293 13 6 7.4793 0.2536 -3.9101 14 7 9.5791 0.7992 -2.7813 15 6 10.2726 1.7268 -3.4706 16 8 9.6895 2.6445 -4.0080 17 6 11.7725 1.6238 -3.5736 18 16 12.4062 3.0057 -4.5560 19 6 14.1303 2.6446 -4.5156 20 1 14.4876 1.7748 -3.9843 21 6 15.0293 3.4774 -5.1674 22 7 14.5938 4.5372 -5.8153 23 14 16.8571 3.0942 -5.1251 24 1 17.0853 1.8571 -4.3359 25 1 17.3536 2.8967 -6.5105 26 1 17.5854 4.2244 -4.4947 27 6 3.4892 -1.1441 -0.0052 28 7 2.1676 -1.1441 0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6589 2.1338 0.0004 33 1 6.0512 -0.8774 0.4349 34 1 6.0513 0.8959 0.5899 35 1 5.8020 0.9979 -1.8255 36 1 9.2483 -1.2619 -1.4607 37 1 7.7728 -1.7785 -2.3121 38 1 7.8202 -1.7786 -0.5327 39 1 6.3945 0.3283 -3.8353 40 1 7.8181 0.7678 -4.8094 41 1 7.7685 -0.7961 -3.9615 42 1 10.0455 0.0651 -2.3518 43 1 12.2085 1.6573 -2.5752 44 1 12.0399 0.6833 -4.0555 45 1 15.2220 5.1194 -6.2705 46 1 4.0293 -2.0794 -0.0097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755227230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:56 Heat of formation + Delta-G solvation = 4.907017 kcal Electronic energy + Delta-G solvation = -25583.102588 eV Core-core repulsion = 21826.877120 eV Total energy + Delta-G solvation = -3756.225468 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.57808 -39.69511 -37.83528 -35.53124 -34.32670 -33.25022 -32.42886 -31.45402 -29.80312 -28.66056 -28.29981 -25.54803 -25.48246 -25.07553 -23.97517 -22.22258 -20.65212 -19.81575 -18.23642 -17.97006 -17.16602 -16.44948 -16.33624 -15.99465 -15.89552 -15.49879 -14.90488 -14.81052 -14.77335 -14.54984 -13.98356 -13.68424 -13.40201 -13.24753 -13.17573 -13.00015 -12.93764 -12.62784 -12.54919 -12.38574 -12.28122 -11.96062 -11.86749 -11.74244 -11.50823 -11.12355 -11.06870 -11.01813 -10.83192 -10.74086 -9.80639 -9.55560 -9.50312 -9.38430 -9.07874 -8.90255 -8.87320 -8.22907 -6.49809 -6.21878 -3.92230 0.30576 0.71195 2.96001 3.09777 3.16868 3.21451 3.28369 3.32687 3.50385 3.66492 3.74785 3.99092 4.05980 4.20287 4.24216 4.43982 4.58660 4.63455 4.75924 4.95395 4.97734 5.03778 5.11598 5.12581 5.13438 5.15210 5.24893 5.35584 5.42999 5.45311 5.49826 5.60323 5.63760 5.79614 5.89129 5.91508 5.94816 6.08192 6.14015 6.33625 6.50335 6.68159 6.83161 6.92881 7.36595 7.59826 7.71305 8.35359 8.62431 9.23647 10.85643 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.035459 B = 0.001634 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.460855 B =17132.389211 C =17489.668191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.076 3.924 3 C 0.053 3.947 4 N -0.430 5.430 5 C 0.075 3.925 6 C 0.113 3.887 7 N -0.672 5.672 8 C 0.078 3.922 9 H 0.054 0.946 10 C -0.145 4.145 11 C 0.143 3.857 12 H 0.085 0.915 13 C -0.157 4.157 14 N -0.733 5.733 15 C 0.533 3.467 16 O -0.517 6.517 17 C -0.153 4.153 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.078 3.922 28 N -0.441 5.441 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.169 0.831 33 H 0.094 0.906 34 H 0.055 0.945 35 H 0.349 0.651 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.397 0.603 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.999 -13.433 14.619 31.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.065 4.065 3 C -0.108 4.108 4 N -0.145 5.145 5 C -0.066 4.066 6 C -0.017 4.017 7 N -0.306 5.306 8 C -0.032 4.032 9 H 0.072 0.928 10 C -0.203 4.203 11 C 0.037 3.963 12 H 0.103 0.897 13 C -0.215 4.215 14 N -0.389 5.389 15 C 0.319 3.681 16 O -0.391 6.391 17 C -0.304 4.304 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.083 4.083 28 N -0.157 5.157 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.186 0.814 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.169 0.831 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.233 0.767 43 H 0.107 0.893 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -25.963 -12.401 13.491 31.779 hybrid contribution 2.274 -0.740 1.175 2.664 sum -23.689 -13.141 14.666 30.805 Atomic orbital electron populations 1.20698 0.87662 1.03962 1.03630 1.22363 0.98586 0.89748 0.95787 1.23610 0.90493 0.99289 0.97363 1.68258 1.08851 1.29511 1.07918 1.22099 0.97656 0.89736 0.97067 1.20782 0.87137 1.02788 0.91029 1.60606 1.07412 1.47015 1.15545 1.21737 0.87153 0.97143 0.97144 0.92806 1.21884 1.00121 0.95348 1.02901 1.20913 0.80807 1.00270 0.94266 0.89694 1.22126 1.00746 1.00901 0.97739 1.46129 1.06564 1.29697 1.56526 1.20315 0.89278 0.81138 0.77368 1.90701 1.70926 1.32744 1.44705 1.23532 0.93612 1.07352 1.05917 1.85404 1.04429 1.28270 1.65262 1.22915 0.91709 1.14465 1.39259 0.90880 1.24993 0.99577 0.94484 0.94531 1.70028 1.35134 1.13470 1.31658 0.86117 0.82951 0.78400 0.78028 1.19618 1.20561 1.20577 1.23590 0.90258 0.99353 0.95093 1.68339 1.08794 1.29348 1.09194 0.89841 0.90143 0.90151 0.81394 0.88799 0.92710 0.83124 0.92293 0.91098 0.92464 0.91401 0.92132 0.92225 0.76732 0.89280 0.89220 0.92240 0.81258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.41 10.19 36.00 0.37 -0.05 16 2 C 0.08 0.55 6.79 -82.42 -0.56 -0.01 16 3 C 0.05 0.39 10.88 -17.37 -0.19 0.20 16 4 N -0.43 -3.98 10.42 -9.29 -0.10 -4.08 16 5 C 0.07 0.62 6.30 -82.41 -0.52 0.10 16 6 C 0.11 0.79 5.81 -4.98 -0.03 0.76 16 7 N -0.67 -5.32 5.50 -108.00 -0.59 -5.91 16 8 C 0.08 0.65 2.66 -67.71 -0.18 0.47 16 9 H 0.05 0.46 7.80 -51.93 -0.40 0.06 16 10 C -0.14 -1.02 8.93 37.16 0.33 -0.69 16 11 C 0.14 1.64 2.30 -67.94 -0.16 1.48 16 12 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 13 C -0.16 -1.78 9.02 37.16 0.34 -1.45 16 14 N -0.73 -9.53 4.99 -53.81 -0.27 -9.80 16 15 C 0.53 9.82 7.81 -10.99 -0.09 9.74 16 16 O -0.52 -11.64 15.53 5.55 0.09 -11.55 16 17 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 18 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 19 C -0.54 -15.25 9.50 30.94 0.29 -14.96 16 20 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 21 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 22 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 23 Si 0.92 21.41 29.55 -169.99 -5.02 16.38 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 27 C 0.08 0.61 10.86 -17.37 -0.19 0.42 16 28 N -0.44 -3.92 10.42 -9.29 -0.10 -4.01 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.08 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.08 0.17 8.09 -51.93 -0.42 -0.25 16 32 H 0.17 0.76 8.06 -52.48 -0.42 0.34 16 33 H 0.09 0.50 7.35 -51.93 -0.38 0.11 16 34 H 0.05 0.42 8.06 -51.93 -0.42 0.00 16 35 H 0.35 3.13 7.91 -39.29 -0.31 2.82 16 36 H 0.06 0.39 6.29 -51.93 -0.33 0.06 16 37 H 0.07 0.54 6.56 -51.93 -0.34 0.20 16 38 H 0.06 0.34 7.45 -51.93 -0.39 -0.04 16 39 H 0.07 0.70 7.17 -51.93 -0.37 0.32 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.62 6.56 -51.93 -0.34 0.28 16 42 H 0.40 4.07 6.58 -40.82 -0.27 3.80 16 43 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 44 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 LS Contribution 394.56 15.07 5.95 5.95 Total: -1.00 -35.73 394.56 -8.85 -44.58 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.87 Total: 2.60 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -0.45 Total: -4.83 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.32 Total: -49.27 kcal Atomic # 8 Polarization: -11.64 SS G_CDS: 0.09 Total: -11.55 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.73 -8.85 -44.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755227230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.483 kcal (2) G-P(sol) polarization free energy of solvation -35.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds