Wall clock time and date at job start Tue Mar 31 2020 21:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38389 * 120.00149 * 2 1 4 4 N 1.32123 * 120.00308 * 179.97438 * 3 2 1 5 5 C 1.32157 * 119.99541 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99512 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.46908 * 274.99348 * 6 5 4 8 8 C 1.46906 * 111.00172 * 180.02562 * 7 6 5 9 9 H 1.08998 * 109.46389 * 324.99645 * 8 7 6 10 10 C 1.52997 * 109.47302 * 84.99810 * 8 7 6 11 11 C 1.52992 * 109.47164 * 205.00386 * 8 7 6 12 12 H 1.08996 * 109.47729 * 64.99293 * 11 8 7 13 13 C 1.53001 * 109.47279 * 304.99573 * 11 8 7 14 14 N 1.46496 * 109.47128 * 184.99869 * 11 8 7 15 15 C 1.34781 * 120.00209 * 204.99948 * 14 11 8 16 16 O 1.21286 * 119.99826 * 359.97438 * 15 14 11 17 17 C 1.50695 * 120.00346 * 179.97438 * 15 14 11 18 18 S 1.81002 * 109.47318 * 179.97438 * 17 15 14 19 19 C 1.76195 * 100.00087 * 180.02562 * 18 17 15 20 20 H 1.08006 * 120.00226 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00253 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99778 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00338 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46801 * 359.97438 * 23 21 19 25 25 H 1.48490 * 109.47361 * 119.99924 * 23 21 19 26 26 H 1.48502 * 109.47153 * 240.00152 * 23 21 19 27 27 C 1.38343 * 120.00451 * 0.24731 * 5 4 3 28 28 N 1.32116 * 120.00193 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47130 * 90.00327 * 1 2 3 30 30 H 1.09008 * 109.47164 * 210.00210 * 1 2 3 31 31 H 1.08999 * 109.47349 * 330.00161 * 1 2 3 32 32 H 1.08005 * 119.99968 * 0.02562 * 3 2 1 33 33 H 1.09005 * 109.46789 * 154.99752 * 6 5 4 34 34 H 1.09001 * 109.47726 * 34.99542 * 6 5 4 35 35 H 1.00896 * 111.00123 * 56.05205 * 7 6 5 36 36 H 1.09002 * 109.47153 * 180.02562 * 10 8 7 37 37 H 1.09001 * 109.46832 * 60.00356 * 10 8 7 38 38 H 1.09004 * 109.47261 * 300.00337 * 10 8 7 39 39 H 1.09000 * 109.47104 * 59.99686 * 13 11 8 40 40 H 1.08993 * 109.47832 * 180.02562 * 13 11 8 41 41 H 1.09001 * 109.46924 * 300.00271 * 13 11 8 42 42 H 0.96999 * 120.00528 * 24.99813 * 14 11 8 43 43 H 1.08998 * 109.47444 * 299.99922 * 17 15 14 44 44 H 1.09002 * 109.47292 * 59.99909 * 17 15 14 45 45 H 0.96991 * 119.99946 * 179.97438 * 22 21 19 46 46 H 1.07998 * 119.99938 * 179.72625 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5202 1.1985 0.0005 5 6 4.1809 0.0540 0.0005 6 6 5.6879 0.0540 0.0005 7 7 6.1775 0.1746 -1.3792 8 6 7.6460 0.1774 -1.4184 9 1 8.0318 0.6920 -0.5384 10 6 8.1587 -1.2640 -1.4321 11 6 8.1211 0.8997 -2.6806 12 1 7.8319 1.9494 -2.6293 13 6 7.4793 0.2536 -3.9101 14 7 9.5791 0.7992 -2.7813 15 6 10.2726 1.7268 -3.4706 16 8 9.6895 2.6445 -4.0080 17 6 11.7725 1.6238 -3.5736 18 16 12.4062 3.0057 -4.5560 19 6 14.1303 2.6446 -4.5156 20 1 14.4876 1.7748 -3.9843 21 6 15.0293 3.4774 -5.1674 22 7 14.5938 4.5372 -5.8153 23 14 16.8571 3.0942 -5.1251 24 1 17.0853 1.8571 -4.3359 25 1 17.3536 2.8967 -6.5105 26 1 17.5854 4.2244 -4.4947 27 6 3.4892 -1.1441 -0.0052 28 7 2.1676 -1.1441 0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6589 2.1338 0.0004 33 1 6.0512 -0.8774 0.4349 34 1 6.0513 0.8959 0.5899 35 1 5.8020 0.9979 -1.8255 36 1 9.2483 -1.2619 -1.4607 37 1 7.7728 -1.7785 -2.3121 38 1 7.8202 -1.7786 -0.5327 39 1 6.3945 0.3283 -3.8353 40 1 7.8181 0.7678 -4.8094 41 1 7.7685 -0.7961 -3.9615 42 1 10.0455 0.0651 -2.3518 43 1 12.2085 1.6573 -2.5752 44 1 12.0399 0.6833 -4.0555 45 1 15.2220 5.1194 -6.2705 46 1 4.0293 -2.0794 -0.0097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755227230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:05:55 Heat of formation + Delta-G solvation = -22.235445 kcal Electronic energy + Delta-G solvation = -25584.279574 eV Core-core repulsion = 21826.877120 eV Total energy + Delta-G solvation = -3757.402454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.12724 -40.95252 -38.81762 -36.30835 -35.11237 -34.58358 -33.92250 -32.46377 -30.73440 -29.70002 -29.06478 -27.66079 -26.11911 -25.63860 -24.80344 -22.80000 -21.90311 -20.77698 -19.86947 -18.79471 -18.18033 -17.75425 -17.02133 -16.88076 -16.71463 -16.63134 -16.33651 -16.16379 -15.87502 -15.65157 -15.06694 -14.72593 -14.53417 -14.26468 -14.08866 -13.82314 -13.60062 -13.40608 -13.27416 -13.17892 -13.16485 -13.07980 -12.98982 -12.91073 -12.62162 -12.55691 -12.44380 -12.10884 -11.91657 -11.75132 -11.64065 -11.15801 -10.95015 -10.26765 -10.16281 -10.08212 -10.03272 -9.50585 -8.66578 -8.34760 -6.12722 -0.23277 0.13596 1.26990 1.41594 1.47191 1.58273 1.61747 2.20190 2.27825 2.61879 2.99644 3.01693 3.22652 3.30784 3.37019 3.49780 3.60579 3.79081 3.91899 3.99749 4.09919 4.16464 4.21528 4.30734 4.48192 4.50354 4.51344 4.61118 4.62456 4.69527 4.76207 4.82043 4.85851 4.89162 5.00677 5.05798 5.12045 5.27334 5.42344 5.45648 5.49285 5.52272 5.89645 6.16456 6.20200 6.33429 6.50739 6.81581 7.06792 7.25500 8.74779 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.035459 B = 0.001634 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.460855 B =17132.389211 C =17489.668191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.070 3.930 3 C 0.044 3.956 4 N -0.457 5.457 5 C 0.064 3.936 6 C 0.117 3.883 7 N -0.670 5.670 8 C 0.090 3.910 9 H 0.056 0.944 10 C -0.143 4.143 11 C 0.143 3.857 12 H 0.060 0.940 13 C -0.148 4.148 14 N -0.706 5.706 15 C 0.535 3.465 16 O -0.565 6.565 17 C -0.129 4.129 18 S -0.153 6.153 19 C -0.546 4.546 20 H 0.084 0.916 21 C 0.013 3.987 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.073 3.927 28 N -0.466 5.466 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.102 0.898 32 H 0.192 0.808 33 H 0.116 0.884 34 H 0.048 0.952 35 H 0.341 0.659 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.027 0.973 41 H 0.074 0.926 42 H 0.415 0.585 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.271 0.729 46 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.883 -15.863 16.301 33.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.070 4.070 3 C -0.116 4.116 4 N -0.173 5.173 5 C -0.076 4.076 6 C -0.012 4.012 7 N -0.303 5.303 8 C -0.020 4.020 9 H 0.074 0.926 10 C -0.201 4.201 11 C 0.038 3.962 12 H 0.078 0.922 13 C -0.207 4.207 14 N -0.362 5.362 15 C 0.321 3.679 16 O -0.443 6.443 17 C -0.281 4.281 18 S 0.074 5.926 19 C -0.693 4.693 20 H 0.102 0.898 21 C -0.191 4.191 22 N -0.549 5.549 23 Si 0.821 3.179 24 H -0.179 1.179 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.087 4.087 28 N -0.182 5.182 29 H 0.109 0.891 30 H 0.097 0.903 31 H 0.121 0.879 32 H 0.209 0.791 33 H 0.134 0.866 34 H 0.066 0.934 35 H 0.160 0.840 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.046 0.954 41 H 0.093 0.907 42 H 0.254 0.746 43 H 0.129 0.871 44 H 0.128 0.872 45 H 0.080 0.920 46 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -25.862 -14.893 15.215 33.499 hybrid contribution 2.066 -0.031 0.710 2.185 sum -23.796 -14.924 15.925 32.289 Atomic orbital electron populations 1.20794 0.85553 1.04971 1.04377 1.22858 1.00032 0.89377 0.94754 1.24041 0.90157 1.00448 0.96946 1.68252 1.09919 1.30350 1.08730 1.22253 0.98122 0.89732 0.97496 1.20826 0.86591 1.03589 0.90225 1.60677 1.06865 1.46467 1.16251 1.21629 0.87515 0.97818 0.95043 0.92582 1.21900 1.00515 0.93967 1.03722 1.21008 0.79425 0.99540 0.96253 0.92208 1.22039 1.01378 1.01208 0.96026 1.45861 1.07288 1.28547 1.54480 1.20082 0.88747 0.81479 0.77641 1.90694 1.71491 1.35014 1.47133 1.23374 0.94627 1.04527 1.05537 1.85600 1.05792 1.33326 1.67847 1.23249 0.91805 1.14868 1.39414 0.89832 1.26132 1.05163 0.94063 0.93790 1.70192 1.37124 1.14796 1.32749 0.84899 0.75867 0.78769 0.78372 1.17935 1.19967 1.19974 1.23917 0.90214 1.00039 0.94562 1.68387 1.09409 1.30238 1.10133 0.89064 0.90339 0.87942 0.79103 0.86582 0.93429 0.84026 0.91563 0.91373 0.90667 0.90284 0.95378 0.90665 0.74591 0.87136 0.87160 0.92017 0.79306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 10.19 71.24 0.73 0.07 16 2 C 0.07 0.96 6.79 42.55 0.29 1.24 16 3 C 0.04 0.62 10.88 84.68 0.92 1.54 16 4 N -0.46 -8.21 10.42 -183.29 -1.91 -10.12 16 5 C 0.06 0.99 6.30 42.53 0.27 1.26 16 6 C 0.12 1.45 5.81 85.56 0.50 1.95 16 7 N -0.67 -9.59 5.50 -495.59 -2.73 -12.32 16 8 C 0.09 1.32 2.66 44.91 0.12 1.44 16 9 H 0.06 0.84 7.80 -2.39 -0.02 0.82 16 10 C -0.14 -1.55 8.93 71.98 0.64 -0.91 16 11 C 0.14 3.16 2.30 44.99 0.10 3.27 16 12 H 0.06 1.67 7.58 -2.39 -0.02 1.65 16 13 C -0.15 -3.28 9.02 71.98 0.65 -2.63 16 14 N -0.71 -17.35 4.99 -442.55 -2.21 -19.56 16 15 C 0.53 19.61 7.81 87.65 0.68 20.30 16 16 O -0.57 -26.33 15.53 -3.05 -0.05 -26.38 16 17 C -0.13 -5.08 6.16 71.23 0.44 -4.64 16 18 S -0.15 -8.51 20.57 -56.49 -1.16 -9.67 16 19 C -0.55 -31.15 9.50 67.95 0.65 -30.50 16 20 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 21 C 0.01 0.75 5.49 84.86 0.47 1.22 16 22 N -0.91 -56.23 13.22 21.65 0.29 -55.94 16 23 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 24 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 C 0.07 1.05 10.86 84.67 0.92 1.97 16 28 N -0.47 -7.83 10.42 -183.30 -1.91 -9.74 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 0.56 8.14 -2.38 -0.02 0.55 16 31 H 0.10 0.20 8.09 -2.39 -0.02 0.18 16 32 H 0.19 1.47 8.06 -2.91 -0.02 1.45 16 33 H 0.12 0.89 7.35 -2.38 -0.02 0.88 16 34 H 0.05 0.67 8.06 -2.39 -0.02 0.65 16 35 H 0.34 5.93 7.91 -89.70 -0.71 5.22 16 36 H 0.07 0.63 6.29 -2.39 -0.02 0.61 16 37 H 0.07 0.82 6.56 -2.39 -0.02 0.80 16 38 H 0.07 0.60 7.45 -2.38 -0.02 0.58 16 39 H 0.08 1.57 7.17 -2.39 -0.02 1.56 16 40 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 1.42 6.56 -2.39 -0.02 1.41 16 42 H 0.41 7.30 6.58 -92.71 -0.61 6.69 16 43 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 44 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 45 H 0.27 15.45 8.31 -92.72 -0.77 14.68 16 46 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -80.70 394.56 -0.59 -81.29 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -0.31 Total: 21.28 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: 7.37 Total: -4.43 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -8.47 Total: -107.68 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.05 Total: -26.38 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.51 SS G_CDS: -1.16 Total: -9.67 kcal Total: -80.70 -0.59 -81.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755227230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.052 kcal (2) G-P(sol) polarization free energy of solvation -80.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds