Wall clock time and date at job start Tue Mar 31 2020 21:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46896 * 2 1 4 4 C 1.50697 * 109.47381 * 119.99485 * 2 1 3 5 5 N 1.31231 * 124.05839 * 300.03173 * 4 2 1 6 6 N 1.27336 * 120.03809 * 179.73007 * 5 4 2 7 7 S 1.56632 * 109.74220 * 359.97438 * 6 5 4 8 8 C 1.38250 * 124.04934 * 119.72494 * 4 2 1 9 9 C 1.47171 * 128.47824 * 0.25385 * 8 4 2 10 10 O 1.21618 * 119.99959 * 313.17589 * 9 8 4 11 11 N 1.34777 * 119.99942 * 133.17631 * 9 8 4 12 12 C 1.46927 * 120.63071 * 182.68282 * 11 9 8 13 13 C 1.53620 * 108.54486 * 126.36805 * 12 11 9 14 14 C 1.53036 * 109.24112 * 54.85408 * 13 12 11 15 15 N 1.46503 * 109.44634 * 178.49554 * 14 13 12 16 16 C 1.46497 * 119.99634 * 60.07029 * 15 14 13 17 17 C 1.36936 * 120.00107 * 240.05814 * 15 14 13 18 18 H 1.08005 * 120.00070 * 10.47986 * 17 15 14 19 19 C 1.38809 * 119.99994 * 190.46813 * 17 15 14 20 20 N 1.31621 * 120.00263 * 21.62285 * 19 17 15 21 21 Si 1.86800 * 120.00014 * 201.61809 * 19 17 15 22 22 H 1.48504 * 109.47306 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46770 * 120.00435 * 21 19 17 24 24 H 1.48499 * 109.47597 * 240.00300 * 21 19 17 25 25 C 1.53036 * 109.54035 * 298.51312 * 14 13 12 26 26 C 1.46926 * 120.63313 * 2.96035 * 11 9 8 27 27 H 1.09002 * 109.46974 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47531 * 299.99937 * 1 2 3 29 29 H 1.09000 * 109.47678 * 60.00073 * 1 2 3 30 30 H 1.08996 * 109.47249 * 240.00657 * 2 1 3 31 31 H 1.08996 * 109.47462 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46897 * 300.00405 * 3 2 1 33 33 H 1.09003 * 109.46979 * 59.99725 * 3 2 1 34 34 H 1.08996 * 109.58626 * 246.20488 * 12 11 9 35 35 H 1.09003 * 109.58408 * 6.62229 * 12 11 9 36 36 H 1.09001 * 109.63063 * 294.86565 * 13 12 11 37 37 H 1.08997 * 109.43100 * 174.72639 * 13 12 11 38 38 H 1.08999 * 109.45644 * 58.53398 * 14 13 12 39 39 H 1.08999 * 109.47429 * 95.35237 * 16 15 14 40 40 H 1.09009 * 109.46723 * 215.34588 * 16 15 14 41 41 H 1.08994 * 109.47439 * 335.34464 * 16 15 14 42 42 H 0.96996 * 120.00190 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.49774 * 301.40805 * 25 14 13 44 44 H 1.09001 * 109.52182 * 181.33359 * 25 14 13 45 45 H 1.09007 * 109.58435 * 353.37944 * 26 11 9 46 46 H 1.09001 * 109.58509 * 113.65136 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7644 -0.3322 2.4582 6 7 2.2257 -0.9933 3.4439 7 16 3.0735 -2.2017 2.9200 8 6 2.8259 -1.8420 1.2012 9 6 3.3390 -2.5706 0.0300 10 8 2.5934 -2.8426 -0.8915 11 7 4.6352 -2.9364 -0.0213 12 6 5.1758 -3.6123 -1.2086 13 6 6.4077 -2.8341 -1.6953 14 6 7.4047 -2.6960 -0.5425 15 7 8.5972 -1.9858 -1.0114 16 6 8.4783 -0.6248 -1.5403 17 6 9.8228 -2.5939 -0.9551 18 1 9.8930 -3.6473 -0.7273 19 6 10.9749 -1.8565 -1.1909 20 7 10.9599 -0.5482 -1.0476 21 14 12.5469 -2.7210 -1.7115 22 1 12.3017 -4.1829 -1.8007 23 1 12.9769 -2.2098 -3.0378 24 1 13.6117 -2.4574 -0.7105 25 6 6.7595 -1.9098 0.6009 26 6 5.5330 -2.6724 1.1113 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.1299 1.4427 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 5.4626 -4.6315 -0.9500 35 1 4.4201 -3.6313 -1.9940 36 1 6.1046 -1.8436 -2.0347 37 1 6.8757 -3.3739 -2.5184 38 1 7.6884 -3.6867 -0.1872 39 1 8.6879 0.0929 -0.7472 40 1 9.1920 -0.4871 -2.3527 41 1 7.4669 -0.4675 -1.9148 42 1 11.7651 -0.0330 -1.2120 43 1 6.4533 -0.9280 0.2399 44 1 7.4778 -1.7912 1.4122 45 1 5.0131 -2.0712 1.8573 46 1 5.8464 -3.6165 1.5569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985717841.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:14 Heat of formation + Delta-G solvation = 60.376447 kcal Electronic energy + Delta-G solvation = -28045.646236 eV Core-core repulsion = 24291.826102 eV Total energy + Delta-G solvation = -3753.820133 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.29318 -40.05604 -37.69853 -35.81220 -35.24301 -32.55068 -31.64415 -30.67486 -29.80389 -27.64787 -27.33652 -26.10001 -25.14887 -23.78252 -22.83609 -22.37246 -21.47785 -19.97876 -18.77654 -18.28612 -17.32101 -16.85243 -16.45857 -15.99960 -15.44454 -15.14197 -15.00050 -14.42544 -14.27628 -13.97953 -13.66273 -13.55916 -13.37547 -13.20555 -13.11163 -12.59988 -12.48655 -12.36890 -12.34594 -11.79498 -11.71440 -11.46229 -11.40256 -11.16860 -11.16089 -10.97543 -10.82669 -10.52761 -10.43666 -10.31097 -10.28229 -10.18380 -9.92710 -9.87507 -9.81573 -9.61399 -8.75092 -8.52654 -6.95098 -5.80284 -3.13605 -0.38224 0.52297 1.28185 1.80771 2.50461 2.87379 3.34933 3.43481 3.44792 3.64537 4.17011 4.32700 4.43857 4.77211 4.79838 4.90615 4.91996 5.10936 5.19795 5.23179 5.36280 5.40945 5.43746 5.47488 5.58329 5.65566 5.68004 5.73239 5.81729 5.83649 5.99998 6.04321 6.09072 6.11464 6.20718 6.35401 6.42845 6.69113 6.82763 6.84750 7.15769 7.38832 7.47296 7.62005 7.77773 7.84202 8.28389 9.16438 9.82484 10.27481 11.26106 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.002967 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.078538 B = 9436.371303 C = 9551.974036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.016 4.016 3 C -0.145 4.145 4 C 0.097 3.903 5 N -0.240 5.240 6 N -0.265 5.265 7 S 0.422 5.578 8 C -0.280 4.280 9 C 0.601 3.399 10 O -0.521 6.521 11 N -0.592 5.592 12 C 0.117 3.883 13 C -0.147 4.147 14 C 0.181 3.819 15 N -0.598 5.598 16 C 0.163 3.837 17 C -0.255 4.255 18 H 0.073 0.927 19 C -0.001 4.001 20 N -0.904 5.904 21 Si 0.898 3.102 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.292 1.292 25 C -0.146 4.146 26 C 0.100 3.900 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.065 0.935 39 H 0.021 0.979 40 H 0.051 0.949 41 H -0.002 1.002 42 H 0.252 0.748 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.065 0.935 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.913 -2.365 4.485 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.038 4.038 3 C -0.203 4.203 4 C -0.049 4.049 5 N -0.106 5.106 6 N -0.245 5.245 7 S 0.559 5.441 8 C -0.420 4.420 9 C 0.385 3.615 10 O -0.398 6.398 11 N -0.324 5.324 12 C -0.005 4.005 13 C -0.188 4.188 14 C 0.072 3.928 15 N -0.319 5.319 16 C 0.019 3.981 17 C -0.384 4.384 18 H 0.091 0.909 19 C -0.199 4.199 20 N -0.550 5.550 21 Si 0.728 3.272 22 H -0.204 1.204 23 H -0.216 1.216 24 H -0.220 1.220 25 C -0.186 4.186 26 C -0.024 4.024 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.016 0.984 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.083 0.917 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.127 -2.405 5.971 19.236 hybrid contribution 0.956 -0.043 -1.420 1.712 sum -17.170 -2.448 4.551 17.931 Atomic orbital electron populations 1.21788 0.92865 1.02434 1.02715 1.19875 0.96946 0.95924 0.91066 1.21854 1.01477 0.94064 1.02917 1.22809 0.94854 0.92952 0.94328 1.70506 1.19695 1.24415 0.96006 1.78821 1.13931 1.07455 1.24295 1.82713 1.38803 1.28742 0.93828 1.27745 1.09548 1.04170 1.00582 1.16515 0.82217 0.78655 0.84124 1.90819 1.56529 1.55225 1.37261 1.48065 1.07935 1.57647 1.18797 1.21882 0.96648 0.95468 0.86493 1.22588 0.94958 1.00555 1.00650 1.20237 0.86827 0.95265 0.90491 1.44063 1.02236 1.14024 1.71558 1.20802 0.94478 0.85023 0.97843 1.19298 0.83078 0.92778 1.43216 0.90865 1.24772 0.97545 0.95463 1.02086 1.70183 1.27728 1.05008 1.52057 0.86285 0.83572 0.79010 0.78308 1.20386 1.21639 1.21953 1.22547 0.95141 0.99773 1.01177 1.22132 0.91696 1.00976 0.87565 0.92390 0.91737 0.91390 0.88056 0.92356 0.91305 0.91558 0.90924 0.89085 0.91793 0.90310 0.91650 0.96038 0.93002 0.98353 0.93822 0.91976 0.90193 0.91683 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.16 37.16 0.34 -0.98 16 2 C -0.02 -0.18 3.27 -91.77 -0.30 -0.48 16 3 C -0.15 -1.43 9.16 37.16 0.34 -1.09 16 4 C 0.10 1.22 5.53 -82.85 -0.46 0.76 16 5 N -0.24 -3.16 11.51 33.42 0.38 -2.77 16 6 N -0.27 -3.35 12.51 60.35 0.75 -2.60 16 7 S 0.42 4.38 20.96 -107.50 -2.25 2.13 16 8 C -0.28 -3.49 5.68 -35.95 -0.20 -3.69 16 9 C 0.60 8.25 7.22 -12.63 -0.09 8.16 16 10 O -0.52 -8.28 15.54 5.26 0.08 -8.20 16 11 N -0.59 -7.68 2.97 -173.87 -0.52 -8.19 16 12 C 0.12 1.51 6.45 -3.49 -0.02 1.49 16 13 C -0.15 -2.28 5.34 -26.39 -0.14 -2.42 16 14 C 0.18 3.23 2.55 -67.89 -0.17 3.06 16 15 N -0.60 -13.83 2.82 -173.44 -0.49 -14.32 16 16 C 0.16 3.84 8.07 59.85 0.48 4.32 16 17 C -0.25 -6.60 9.69 -15.06 -0.15 -6.75 16 18 H 0.07 1.84 7.77 -52.48 -0.41 1.44 16 19 C 0.00 -0.02 4.98 -17.43 -0.09 -0.11 16 20 N -0.90 -25.54 10.54 55.49 0.58 -24.95 16 21 Si 0.90 21.14 29.61 -169.99 -5.03 16.11 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 C -0.15 -2.29 5.34 -26.62 -0.14 -2.43 16 26 C 0.10 1.22 6.04 -3.71 -0.02 1.19 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.10 1.22 6.69 -51.93 -0.35 0.87 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 1.19 7.02 -51.93 -0.36 0.83 16 36 H 0.06 1.06 6.72 -51.93 -0.35 0.71 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.07 1.16 7.79 -51.93 -0.40 0.75 16 39 H 0.02 0.55 7.65 -51.93 -0.40 0.15 16 40 H 0.05 1.35 6.73 -51.92 -0.35 1.00 16 41 H 0.00 -0.04 6.47 -51.93 -0.34 -0.38 16 42 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 43 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 44 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.07 0.72 4.26 -37.72 -0.16 0.56 16 46 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 374.79 15.07 5.65 5.65 Total: -1.00 -30.13 374.79 -8.34 -38.46 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -6.88 Total: -2.32 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -0.62 Total: 1.02 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.72 Total: -52.84 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.08 Total: -8.20 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Atomic # 16 Polarization: 4.38 SS G_CDS: -2.25 Total: 2.13 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.13 -8.34 -38.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985717841.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.841 kcal (2) G-P(sol) polarization free energy of solvation -30.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds