Wall clock time and date at job start Tue Mar 31 2020 21:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46896 * 2 1 4 4 C 1.50697 * 109.47381 * 119.99485 * 2 1 3 5 5 N 1.31231 * 124.05839 * 300.03173 * 4 2 1 6 6 N 1.27336 * 120.03809 * 179.73007 * 5 4 2 7 7 S 1.56632 * 109.74220 * 359.97438 * 6 5 4 8 8 C 1.38250 * 124.04934 * 119.72494 * 4 2 1 9 9 C 1.47171 * 128.47824 * 0.25385 * 8 4 2 10 10 O 1.21618 * 119.99959 * 313.17589 * 9 8 4 11 11 N 1.34777 * 119.99942 * 133.17631 * 9 8 4 12 12 C 1.46927 * 120.63071 * 182.68282 * 11 9 8 13 13 C 1.53620 * 108.54486 * 126.36805 * 12 11 9 14 14 C 1.53036 * 109.24112 * 54.85408 * 13 12 11 15 15 N 1.46503 * 109.44634 * 178.49554 * 14 13 12 16 16 C 1.46497 * 119.99634 * 60.07029 * 15 14 13 17 17 C 1.36936 * 120.00107 * 240.05814 * 15 14 13 18 18 H 1.08005 * 120.00070 * 10.47986 * 17 15 14 19 19 C 1.38809 * 119.99994 * 190.46813 * 17 15 14 20 20 N 1.31621 * 120.00263 * 21.62285 * 19 17 15 21 21 Si 1.86800 * 120.00014 * 201.61809 * 19 17 15 22 22 H 1.48504 * 109.47306 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46770 * 120.00435 * 21 19 17 24 24 H 1.48499 * 109.47597 * 240.00300 * 21 19 17 25 25 C 1.53036 * 109.54035 * 298.51312 * 14 13 12 26 26 C 1.46926 * 120.63313 * 2.96035 * 11 9 8 27 27 H 1.09002 * 109.46974 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47531 * 299.99937 * 1 2 3 29 29 H 1.09000 * 109.47678 * 60.00073 * 1 2 3 30 30 H 1.08996 * 109.47249 * 240.00657 * 2 1 3 31 31 H 1.08996 * 109.47462 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.46897 * 300.00405 * 3 2 1 33 33 H 1.09003 * 109.46979 * 59.99725 * 3 2 1 34 34 H 1.08996 * 109.58626 * 246.20488 * 12 11 9 35 35 H 1.09003 * 109.58408 * 6.62229 * 12 11 9 36 36 H 1.09001 * 109.63063 * 294.86565 * 13 12 11 37 37 H 1.08997 * 109.43100 * 174.72639 * 13 12 11 38 38 H 1.08999 * 109.45644 * 58.53398 * 14 13 12 39 39 H 1.08999 * 109.47429 * 95.35237 * 16 15 14 40 40 H 1.09009 * 109.46723 * 215.34588 * 16 15 14 41 41 H 1.08994 * 109.47439 * 335.34464 * 16 15 14 42 42 H 0.96996 * 120.00190 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.49774 * 301.40805 * 25 14 13 44 44 H 1.09001 * 109.52182 * 181.33359 * 25 14 13 45 45 H 1.09007 * 109.58435 * 353.37944 * 26 11 9 46 46 H 1.09001 * 109.58509 * 113.65136 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2305 5 7 1.7644 -0.3322 2.4582 6 7 2.2257 -0.9933 3.4439 7 16 3.0735 -2.2017 2.9200 8 6 2.8259 -1.8420 1.2012 9 6 3.3390 -2.5706 0.0300 10 8 2.5934 -2.8426 -0.8915 11 7 4.6352 -2.9364 -0.0213 12 6 5.1758 -3.6123 -1.2086 13 6 6.4077 -2.8341 -1.6953 14 6 7.4047 -2.6960 -0.5425 15 7 8.5972 -1.9858 -1.0114 16 6 8.4783 -0.6248 -1.5403 17 6 9.8228 -2.5939 -0.9551 18 1 9.8930 -3.6473 -0.7273 19 6 10.9749 -1.8565 -1.1909 20 7 10.9599 -0.5482 -1.0476 21 14 12.5469 -2.7210 -1.7115 22 1 12.3017 -4.1829 -1.8007 23 1 12.9769 -2.2098 -3.0378 24 1 13.6117 -2.4574 -0.7105 25 6 6.7595 -1.9098 0.6009 26 6 5.5330 -2.6724 1.1113 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 3.1299 1.4427 -0.0005 32 1 1.6765 1.9564 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 5.4626 -4.6315 -0.9500 35 1 4.4201 -3.6313 -1.9940 36 1 6.1046 -1.8436 -2.0347 37 1 6.8757 -3.3739 -2.5184 38 1 7.6884 -3.6867 -0.1872 39 1 8.6879 0.0929 -0.7472 40 1 9.1920 -0.4871 -2.3527 41 1 7.4669 -0.4675 -1.9148 42 1 11.7651 -0.0330 -1.2120 43 1 6.4533 -0.9280 0.2399 44 1 7.4778 -1.7912 1.4122 45 1 5.0131 -2.0712 1.8573 46 1 5.8464 -3.6165 1.5569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985717841.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:40:13 Heat of formation + Delta-G solvation = 42.888657 kcal Electronic energy + Delta-G solvation = -28046.404563 eV Core-core repulsion = 24291.826102 eV Total energy + Delta-G solvation = -3754.578461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.24579 -41.15699 -39.03089 -36.85530 -36.60850 -34.09398 -32.81494 -31.80030 -31.37352 -28.66028 -28.09759 -28.05421 -26.49744 -24.89402 -24.12938 -23.58471 -22.57390 -21.20740 -19.98767 -19.22253 -18.75713 -18.36699 -17.50981 -17.01444 -16.93404 -16.38523 -16.04880 -15.73724 -15.37739 -15.24237 -15.08928 -14.94332 -14.60433 -14.20884 -14.12930 -13.91635 -13.85090 -13.41417 -13.29883 -13.15100 -13.07477 -12.87246 -12.62468 -12.40774 -12.27270 -12.22702 -12.18025 -12.06023 -11.99486 -11.79621 -11.72804 -11.50219 -11.25344 -11.15285 -10.86136 -10.65973 -10.51203 -9.84209 -8.87755 -7.82304 -5.16087 -1.32443 -0.38588 0.37093 0.85293 1.45062 1.47632 1.51413 1.59999 1.84552 2.53682 2.72753 3.17911 3.31104 3.42618 3.58447 3.73291 3.91383 4.02684 4.08132 4.10345 4.10647 4.26528 4.35146 4.47237 4.56796 4.62829 4.71328 4.76308 4.81874 4.86513 4.86624 4.90279 4.96131 5.06269 5.06897 5.23975 5.27975 5.31562 5.33797 5.46766 5.56944 5.63845 5.75135 6.09251 6.31057 6.54473 6.78431 7.16549 7.92089 8.33114 9.23225 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017990 B = 0.002967 C = 0.002931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.078538 B = 9436.371303 C = 9551.974036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.019 4.019 3 C -0.141 4.141 4 C 0.094 3.906 5 N -0.258 5.258 6 N -0.289 5.289 7 S 0.497 5.503 8 C -0.306 4.306 9 C 0.605 3.395 10 O -0.545 6.545 11 N -0.592 5.592 12 C 0.125 3.875 13 C -0.135 4.135 14 C 0.174 3.826 15 N -0.612 5.612 16 C 0.183 3.817 17 C -0.253 4.253 18 H 0.082 0.918 19 C -0.058 4.058 20 N -0.939 5.939 21 Si 0.959 3.041 22 H -0.264 1.264 23 H -0.297 1.297 24 H -0.298 1.298 25 C -0.136 4.136 26 C 0.109 3.891 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.048 0.952 37 H 0.075 0.925 38 H 0.073 0.927 39 H -0.007 1.007 40 H 0.020 0.980 41 H 0.023 0.977 42 H 0.245 0.755 43 H 0.045 0.955 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.019 -4.103 5.128 20.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.041 4.041 3 C -0.198 4.198 4 C -0.053 4.053 5 N -0.123 5.123 6 N -0.269 5.269 7 S 0.633 5.367 8 C -0.446 4.446 9 C 0.390 3.610 10 O -0.424 6.424 11 N -0.324 5.324 12 C 0.003 3.997 13 C -0.175 4.175 14 C 0.067 3.933 15 N -0.334 5.334 16 C 0.038 3.962 17 C -0.383 4.383 18 H 0.100 0.900 19 C -0.252 4.252 20 N -0.587 5.587 21 Si 0.788 3.212 22 H -0.188 1.188 23 H -0.225 1.225 24 H -0.225 1.225 25 C -0.177 4.177 26 C -0.015 4.015 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.084 0.916 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.012 0.988 40 H 0.039 0.961 41 H 0.041 0.959 42 H 0.054 0.946 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -19.267 -4.176 6.636 20.801 hybrid contribution 1.265 0.446 -1.570 2.065 sum -18.002 -3.730 5.066 19.069 Atomic orbital electron populations 1.21758 0.91673 1.02220 1.03611 1.19938 0.97944 0.96150 0.90062 1.21825 1.00614 0.93632 1.03773 1.23057 0.94564 0.93058 0.94639 1.70556 1.20575 1.25051 0.96089 1.78617 1.14810 1.08609 1.24871 1.82365 1.36494 1.26401 0.91407 1.27742 1.10498 1.04686 1.01703 1.16575 0.82147 0.78176 0.84071 1.90806 1.57157 1.56162 1.38268 1.48091 1.07854 1.57454 1.18976 1.21834 0.95201 0.96046 0.86629 1.22390 0.95393 1.00225 0.99497 1.20520 0.85686 0.95207 0.91914 1.44292 1.03203 1.13901 1.71996 1.20437 0.94797 0.85128 0.95843 1.19687 0.84126 0.93197 1.41305 0.90021 1.25485 1.00485 0.96066 1.03208 1.70332 1.28019 1.06319 1.54028 0.85322 0.80096 0.78708 0.77046 1.18814 1.22459 1.22546 1.22328 0.96338 0.99120 0.99883 1.22125 0.89950 1.02080 0.87345 0.93120 0.91737 0.89584 0.89230 0.93605 0.89535 0.91608 0.88404 0.88979 0.93284 0.90622 0.90869 0.98829 0.96093 0.95852 0.94591 0.93660 0.91385 0.90572 0.87142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.16 71.98 0.66 -1.73 16 2 C -0.02 -0.40 3.27 -11.54 -0.04 -0.44 16 3 C -0.14 -2.67 9.16 71.98 0.66 -2.01 16 4 C 0.09 2.26 5.53 42.65 0.24 2.50 16 5 N -0.26 -6.50 11.51 -48.19 -0.55 -7.05 16 6 N -0.29 -6.83 12.51 37.02 0.46 -6.37 16 7 S 0.50 9.09 20.96 -56.49 -1.18 7.90 16 8 C -0.31 -7.11 5.68 24.62 0.14 -6.97 16 9 C 0.61 15.51 7.22 86.59 0.63 16.13 16 10 O -0.55 -16.58 15.54 -4.09 -0.06 -16.65 16 11 N -0.59 -13.88 2.97 -822.25 -2.44 -16.32 16 12 C 0.12 2.88 6.45 86.51 0.56 3.44 16 13 C -0.14 -3.96 5.34 30.81 0.16 -3.79 16 14 C 0.17 5.94 2.55 45.01 0.11 6.06 16 15 N -0.61 -28.23 2.82 -702.64 -1.98 -30.21 16 16 C 0.18 8.80 8.07 127.77 1.03 9.83 16 17 C -0.25 -13.03 9.69 84.03 0.81 -12.21 16 18 H 0.08 3.99 7.77 -2.91 -0.02 3.97 16 19 C -0.06 -3.15 4.98 84.86 0.42 -2.72 16 20 N -0.94 -54.44 10.54 21.65 0.23 -54.21 16 21 Si 0.96 43.75 29.61 68.60 2.03 45.78 16 22 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 23 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 24 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 25 C -0.14 -4.10 5.34 30.67 0.16 -3.93 16 26 C 0.11 2.32 6.04 86.36 0.52 2.84 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 2.11 6.69 -2.39 -0.02 2.10 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.09 2.20 7.02 -2.39 -0.02 2.18 16 36 H 0.05 1.58 6.72 -2.39 -0.02 1.56 16 37 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.07 2.40 7.79 -2.39 -0.02 2.39 16 39 H -0.01 -0.35 7.65 -2.39 -0.02 -0.37 16 40 H 0.02 1.10 6.73 -2.38 -0.02 1.09 16 41 H 0.02 0.97 6.47 -2.39 -0.02 0.96 16 42 H 0.24 13.91 8.31 -92.71 -0.77 13.14 16 43 H 0.04 1.51 7.72 -2.39 -0.02 1.49 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 45 H 0.08 1.48 4.26 -11.41 -0.05 1.43 16 46 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -65.65 374.79 3.52 -62.13 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.95 Total: 7.99 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 6.07 Total: 7.01 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -4.28 Total: -114.16 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.06 Total: -16.65 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 9.09 SS G_CDS: -1.18 Total: 7.90 kcal Total: -65.65 3.52 -62.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985717841.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.019 kcal (2) G-P(sol) polarization free energy of solvation -65.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds