Wall clock time and date at job start Tue Mar 31 2020 21:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50700 * 109.47567 * 2 1 4 4 N 1.31242 * 124.05110 * 269.70676 * 3 2 1 5 5 N 1.27334 * 120.03251 * 179.72964 * 4 3 2 6 6 S 1.56636 * 109.74502 * 0.51737 * 5 4 3 7 7 C 1.38239 * 124.05711 * 89.99398 * 3 2 1 8 8 C 1.47169 * 128.47803 * 0.02622 * 7 3 2 9 9 O 1.21626 * 119.99880 * 36.79059 * 8 7 3 10 10 N 1.34780 * 120.00120 * 216.78510 * 8 7 3 11 11 C 1.46925 * 120.63056 * 5.68792 * 10 8 7 12 12 C 1.53188 * 108.77912 * 126.36437 * 11 10 8 13 13 C 1.53043 * 109.31320 * 54.63445 * 12 11 10 14 14 H 1.08993 * 109.46085 * 58.65398 * 13 12 11 15 15 C 1.52999 * 109.46029 * 178.61888 * 13 12 11 16 16 N 1.46507 * 109.46825 * 294.99465 * 15 13 12 17 17 C 1.36937 * 119.99724 * 180.02562 * 16 15 13 18 18 H 1.07991 * 120.00235 * 359.97438 * 17 16 15 19 19 C 1.38815 * 119.99478 * 180.02562 * 17 16 15 20 20 N 1.31620 * 119.99455 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00168 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47644 * 89.99939 * 21 19 17 23 23 H 1.48500 * 109.46867 * 209.99733 * 21 19 17 24 24 H 1.48500 * 109.47001 * 329.99540 * 21 19 17 25 25 C 1.53046 * 109.53439 * 298.63410 * 13 12 11 26 26 H 1.09008 * 109.49603 * 181.34999 * 25 13 12 27 27 C 1.52993 * 109.50049 * 301.41367 * 25 13 12 28 28 C 1.46923 * 120.62795 * 185.39716 * 10 8 7 29 29 H 1.09000 * 109.47162 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47028 * 60.00248 * 1 2 3 31 31 H 1.09006 * 109.47124 * 300.00192 * 1 2 3 32 32 H 1.09003 * 109.47028 * 119.99751 * 2 1 3 33 33 H 1.08998 * 109.47415 * 239.99636 * 2 1 3 34 34 H 1.09002 * 109.58186 * 246.15482 * 11 10 8 35 35 H 1.09006 * 109.58752 * 6.57300 * 11 10 8 36 36 H 1.09002 * 109.49919 * 174.58629 * 12 11 10 37 37 H 1.09003 * 109.49467 * 294.65125 * 12 11 10 38 38 H 1.09000 * 109.47601 * 54.99717 * 15 13 12 39 39 H 1.09000 * 109.47312 * 175.00020 * 15 13 12 40 40 H 0.96993 * 119.99681 * 0.02562 * 16 15 13 41 41 H 0.97007 * 119.99696 * 180.02562 * 20 19 17 42 42 H 1.09005 * 109.47020 * 59.99861 * 27 25 13 43 43 H 1.09003 * 109.47531 * 180.02562 * 27 25 13 44 44 H 1.09004 * 109.47483 * 300.00151 * 27 25 13 45 45 H 1.09001 * 109.59508 * 353.42529 * 28 10 8 46 46 H 1.09001 * 109.58430 * 113.85177 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2827 2.1117 -1.0874 5 7 2.7008 3.3111 -0.9982 6 16 2.8424 3.7115 0.5095 7 6 2.2904 2.1507 1.1453 8 6 2.1435 1.7341 2.5491 9 8 2.4096 0.5932 2.8759 10 7 1.7142 2.6170 3.4726 11 6 1.2710 3.9602 3.0751 12 6 -0.1333 4.2026 3.6372 13 6 -0.1209 3.9667 5.1493 14 1 0.6008 4.6373 5.6155 15 6 -1.5139 4.2414 5.7194 16 7 -1.8394 5.6598 5.5510 17 6 -3.0434 6.1427 5.9897 18 1 -3.7531 5.4778 6.4594 19 6 -3.3521 7.4866 5.8296 20 7 -4.5095 7.9506 6.2509 21 14 -2.1255 8.6361 5.0152 22 1 -2.3680 8.6616 3.5504 23 1 -2.2877 10.0049 5.5677 24 1 -0.7455 8.1556 5.2802 25 6 0.2710 2.5157 5.4377 26 1 0.2564 2.3419 6.5137 27 6 -0.7218 1.5731 4.7546 28 6 1.6746 2.2522 4.8953 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.9586 4.7052 3.4755 35 1 1.2463 4.0299 1.9875 36 1 -0.4352 5.2296 3.4316 37 1 -0.8369 3.5155 3.1671 38 1 -2.2490 3.6345 5.1908 39 1 -1.5289 3.9886 6.7796 40 1 -1.2022 6.2568 5.1288 41 1 -4.7254 8.8896 6.1387 42 1 -0.7059 1.7465 3.6786 43 1 -0.4425 0.5398 4.9607 44 1 -1.7245 1.7614 5.1383 45 1 1.9162 1.1954 5.0086 46 1 2.3957 2.8551 5.4473 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184759321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:24 Heat of formation + Delta-G solvation = 45.547288 kcal Electronic energy + Delta-G solvation = -28064.557919 eV Core-core repulsion = 24310.094745 eV Total energy + Delta-G solvation = -3754.463174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.39405 -40.53736 -38.33858 -35.30767 -34.75830 -33.68711 -32.07173 -30.85295 -30.77058 -28.28067 -27.45086 -26.63081 -24.35202 -23.81872 -23.25450 -22.43437 -21.23754 -20.11346 -18.93301 -18.67240 -17.82158 -17.32073 -16.59744 -16.16771 -15.59984 -15.14085 -15.03956 -14.55447 -14.46823 -14.37683 -14.25297 -13.93438 -13.65867 -13.39749 -13.09937 -12.89228 -12.83676 -12.58204 -12.53405 -12.38274 -11.78704 -11.78186 -11.63845 -11.49353 -11.32190 -11.17210 -10.90561 -10.74955 -10.57853 -10.43832 -10.30407 -10.28292 -10.17918 -10.07528 -9.80937 -9.63245 -8.94513 -8.92824 -7.27582 -5.81337 -3.16988 -0.56320 0.40696 1.14074 1.63899 2.37122 2.65715 3.30729 3.32448 3.40247 3.51713 3.99068 4.23853 4.46264 4.53616 4.67353 4.75025 4.78387 4.82974 4.93580 4.97081 4.98731 5.12530 5.29439 5.43724 5.47375 5.51193 5.53928 5.58163 5.59818 5.62050 5.71770 5.72516 5.81766 5.92018 5.96774 6.05222 6.17701 6.20220 6.21336 6.39292 6.61659 6.74035 6.92610 7.33293 7.64974 7.95033 8.37671 9.16633 9.88735 10.08239 11.37235 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013886 B = 0.003360 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.919742 B = 8331.333305 C = 9189.866481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.050 4.050 3 C 0.099 3.901 4 N -0.247 5.247 5 N -0.262 5.262 6 S 0.428 5.572 7 C -0.290 4.290 8 C 0.605 3.395 9 O -0.517 6.517 10 N -0.594 5.594 11 C 0.096 3.904 12 C -0.128 4.128 13 C -0.093 4.093 14 H 0.074 0.926 15 C 0.163 3.837 16 N -0.756 5.756 17 C -0.244 4.244 18 H 0.089 0.911 19 C 0.004 3.996 20 N -0.934 5.934 21 Si 0.883 3.117 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C -0.098 4.098 26 H 0.088 0.912 27 C -0.147 4.147 28 C 0.119 3.881 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.030 0.970 39 H 0.027 0.973 40 H 0.359 0.641 41 H 0.260 0.740 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.064 0.936 45 H 0.096 0.904 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.764 -14.206 -9.570 23.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.091 4.091 3 C -0.048 4.048 4 N -0.112 5.112 5 N -0.242 5.242 6 S 0.565 5.435 7 C -0.430 4.430 8 C 0.390 3.610 9 O -0.394 6.394 10 N -0.327 5.327 11 C -0.028 4.028 12 C -0.166 4.166 13 C -0.112 4.112 14 H 0.092 0.908 15 C 0.036 3.964 16 N -0.401 5.401 17 C -0.374 4.374 18 H 0.107 0.893 19 C -0.192 4.192 20 N -0.582 5.582 21 Si 0.713 3.287 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.118 4.118 26 H 0.107 0.893 27 C -0.204 4.204 28 C -0.002 4.002 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.123 0.877 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.192 0.808 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.115 0.885 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 17.240 -13.249 -10.440 24.119 hybrid contribution 0.298 0.053 -0.053 0.307 sum 17.538 -13.196 -10.493 24.327 Atomic orbital electron populations 1.21729 0.93259 1.02910 1.02460 1.20320 0.96840 0.86598 1.05321 1.22910 0.97166 0.99633 0.85071 1.70628 1.13770 0.98910 1.27915 1.78817 1.18658 1.10396 1.16352 1.82784 1.46482 1.13591 1.00655 1.27700 1.15039 1.00205 1.00080 1.16454 0.77742 0.84872 0.81942 1.90808 1.50877 1.18035 1.79697 1.47933 1.63034 1.14138 1.07585 1.22148 0.97840 0.83166 0.99640 1.21989 0.94638 1.03573 0.96436 1.21383 0.99433 0.95407 0.95011 0.90789 1.20689 0.91881 0.86368 0.97479 1.42730 1.18976 1.04666 1.73773 1.19055 0.92478 0.93651 1.32216 0.89272 1.24678 0.96733 0.96716 1.01031 1.69703 1.21941 1.14390 1.52167 0.86573 0.81295 0.81215 0.79589 1.21068 1.21698 1.20342 1.21406 0.94041 0.95559 1.00788 0.89347 1.21886 0.99519 0.98276 1.00724 1.21727 0.97510 1.02575 0.78432 0.91027 0.92142 0.92430 0.87732 0.89084 0.89982 0.91069 0.89700 0.90690 0.95179 0.95479 0.80763 0.93039 0.92760 0.92956 0.91656 0.88522 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.89 37.16 0.37 -0.86 16 2 C -0.05 -0.45 6.27 -27.88 -0.17 -0.63 16 3 C 0.10 1.09 6.25 -82.84 -0.52 0.57 16 4 N -0.25 -3.00 11.54 33.42 0.39 -2.62 16 5 N -0.26 -3.08 12.51 60.35 0.75 -2.33 16 6 S 0.43 3.93 20.68 -107.50 -2.22 1.70 16 7 C -0.29 -3.09 5.80 -35.96 -0.21 -3.30 16 8 C 0.61 6.88 7.51 -12.63 -0.09 6.79 16 9 O -0.52 -6.96 14.97 5.25 0.08 -6.88 16 10 N -0.59 -6.03 2.42 -174.39 -0.42 -6.45 16 11 C 0.10 0.92 5.77 -3.71 -0.02 0.90 16 12 C -0.13 -1.55 4.90 -26.61 -0.13 -1.68 16 13 C -0.09 -1.20 1.96 -90.57 -0.18 -1.37 16 14 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 15 C 0.16 2.84 5.18 -4.04 -0.02 2.82 16 16 N -0.76 -16.78 5.12 -59.91 -0.31 -17.08 16 17 C -0.24 -6.69 10.47 -15.06 -0.16 -6.85 16 18 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 19 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 20 N -0.93 -28.87 13.97 55.49 0.78 -28.10 16 21 Si 0.88 21.27 27.74 -169.99 -4.71 16.55 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 24 H -0.28 -6.15 6.52 56.52 0.37 -5.78 16 25 C -0.10 -1.03 2.72 -90.72 -0.25 -1.28 16 26 H 0.09 0.87 8.14 -51.92 -0.42 0.45 16 27 C -0.15 -1.62 8.37 37.15 0.31 -1.31 16 28 C 0.12 1.14 5.80 -3.93 -0.02 1.12 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 1.01 6.59 -51.93 -0.34 0.67 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.65 4.39 -36.32 -0.16 0.49 16 36 H 0.08 1.15 7.15 -51.93 -0.37 0.77 16 37 H 0.07 0.95 6.34 -51.93 -0.33 0.62 16 38 H 0.03 0.54 6.74 -51.93 -0.35 0.20 16 39 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.36 7.68 4.71 -40.82 -0.19 7.49 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.05 0.63 5.97 -51.93 -0.31 0.32 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.78 6.58 -51.93 -0.34 0.43 16 45 H 0.10 0.97 7.00 -51.93 -0.36 0.60 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -32.48 369.33 -7.87 -40.35 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.58 Total: 4.35 kcal Atomic # 6 Polarization: -3.87 SS G_CDS: -1.19 Total: -5.06 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 1.19 Total: -56.58 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: 0.08 Total: -6.88 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.71 Total: 16.55 kcal Atomic # 16 Polarization: 3.93 SS G_CDS: -2.22 Total: 1.70 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.48 -7.87 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184759321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.902 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds