Wall clock time and date at job start Tue Mar 31 2020 20:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47014 * 2 1 4 4 N 1.46500 * 109.46293 * 305.14983 * 3 2 1 5 5 C 1.36937 * 120.00210 * 298.44749 * 4 3 2 6 6 H 1.08000 * 119.99756 * 355.20604 * 5 4 3 7 7 C 1.38812 * 120.00149 * 175.21328 * 5 4 3 8 8 N 1.31620 * 120.00093 * 179.97438 * 7 5 4 9 9 Si 1.86801 * 119.99960 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47324 * 270.00205 * 9 7 5 11 11 H 1.48506 * 109.46952 * 30.00633 * 9 7 5 12 12 H 1.48507 * 109.46827 * 150.00243 * 9 7 5 13 13 C 1.53044 * 109.46416 * 65.12487 * 3 2 1 14 14 C 1.53162 * 109.32767 * 181.38241 * 13 3 2 15 15 N 1.46921 * 108.77162 * 305.35479 * 14 13 3 16 16 C 1.34770 * 120.63255 * 233.59004 * 15 14 13 17 17 O 1.21586 * 119.99997 * 180.02562 * 16 15 14 18 18 C 1.47544 * 120.00087 * 0.02562 * 16 15 14 19 19 C 1.39902 * 120.18814 * 89.72701 * 18 16 15 20 20 F 1.35099 * 120.09488 * 359.97438 * 19 18 16 21 21 C 1.38216 * 119.80590 * 179.74502 * 19 18 16 22 22 C 1.38312 * 120.19269 * 0.51093 * 21 19 18 23 23 C 1.38304 * 120.38017 * 359.76265 * 22 21 19 24 24 C 1.38224 * 120.18817 * 359.97438 * 23 22 21 25 25 F 1.35100 * 120.09312 * 179.97438 * 24 23 22 26 26 C 1.46928 * 118.73556 * 53.61179 * 15 14 13 27 27 C 1.53039 * 109.45922 * 185.17956 * 3 2 1 28 28 H 1.09000 * 109.47118 * 174.47245 * 1 2 3 29 29 H 1.08995 * 109.47102 * 294.47879 * 1 2 3 30 30 H 1.09000 * 109.47375 * 54.47804 * 1 2 3 31 31 H 1.09003 * 109.47080 * 239.99787 * 2 1 3 32 32 H 1.09002 * 109.47120 * 120.00266 * 2 1 3 33 33 H 0.97004 * 119.99805 * 118.43711 * 4 3 2 34 34 H 0.96995 * 119.99792 * 179.97438 * 8 7 5 35 35 H 1.08992 * 109.49568 * 301.32320 * 13 3 2 36 36 H 1.09005 * 109.49549 * 61.41779 * 13 3 2 37 37 H 1.09004 * 109.58287 * 185.56835 * 14 13 3 38 38 H 1.09000 * 109.59169 * 65.14636 * 14 13 3 39 39 H 1.08002 * 119.90668 * 180.22800 * 21 19 18 40 40 H 1.07994 * 119.80856 * 179.74527 * 22 21 19 41 41 H 1.07996 * 119.90246 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.58109 * 186.60495 * 26 15 14 43 43 H 1.08996 * 109.70246 * 66.24986 * 26 15 14 44 44 H 1.08996 * 109.50148 * 298.57970 * 27 3 2 45 45 H 1.09005 * 109.50067 * 58.67736 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 1.4529 2.1677 -1.1294 5 6 1.7026 1.7565 -2.4115 6 1 2.3933 0.9465 -2.5939 7 6 1.0683 2.3809 -3.4767 8 7 1.3087 1.9859 -4.7090 9 14 -0.1267 3.7816 -3.1611 10 1 -1.4963 3.2345 -2.9886 11 1 0.2754 4.5072 -1.9294 12 1 -0.1088 4.7167 -4.3147 13 6 1.6377 2.1256 1.3091 14 6 2.1196 3.5793 1.2913 15 7 3.5638 3.5953 1.0216 16 6 4.4092 4.2446 1.8463 17 8 5.6022 4.2508 1.6119 18 6 3.8869 4.9479 3.0335 19 6 3.7666 4.2744 4.2539 20 9 4.1281 2.9762 4.3496 21 6 3.2814 4.9424 5.3623 22 6 2.9053 6.2698 5.2651 23 6 3.0156 6.9417 4.0612 24 6 3.5039 6.2905 2.9440 25 9 3.6103 6.9485 1.7689 26 6 4.0688 2.8904 -0.1644 27 6 3.5648 1.4441 -0.1303 28 1 -0.3633 -1.0229 -0.0990 29 1 -0.3633 0.4258 0.9353 30 1 -0.3634 0.5971 -0.8364 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 0.8872 2.9392 -0.9690 34 1 0.8651 2.4220 -5.4532 35 1 0.5529 2.1035 1.4125 36 1 2.0944 1.6010 2.1485 37 1 1.9233 4.0412 2.2589 38 1 1.5957 4.1284 0.5090 39 1 3.1913 4.4251 6.3061 40 1 2.5231 6.7846 6.1341 41 1 2.7193 7.9780 3.9939 42 1 5.1588 2.8978 -0.1573 43 1 3.7060 3.3826 -1.0667 44 1 4.0034 0.9261 0.7225 45 1 3.8519 0.9370 -1.0515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484819621.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:45 Heat of formation + Delta-G solvation = -78.936228 kcal Electronic energy + Delta-G solvation = -31137.735097 eV Core-core repulsion = 26791.740775 eV Total energy + Delta-G solvation = -4345.994322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.31860 -49.28787 -40.37196 -38.92314 -37.94604 -34.93611 -32.57655 -32.04799 -30.77214 -30.65452 -30.33764 -29.55205 -25.63332 -24.12851 -23.49071 -23.21356 -22.85795 -21.54331 -19.90900 -18.64132 -18.17747 -17.80562 -17.62099 -17.27435 -16.56233 -15.97550 -15.88682 -15.58382 -15.36368 -14.98129 -14.71321 -14.47580 -14.32547 -14.12325 -13.75382 -13.51807 -13.20020 -13.13600 -12.96977 -12.49858 -12.42950 -12.26505 -12.24299 -12.09758 -11.83157 -11.57314 -11.25669 -10.98330 -10.84616 -10.65998 -10.51638 -10.12262 -10.11812 -9.93466 -9.78630 -9.47309 -9.32173 -9.18529 -8.95052 -8.40303 -7.26790 -5.77941 -3.13642 0.40275 0.55104 2.46706 2.83019 3.07958 3.32762 3.35721 3.42399 3.43480 3.97693 4.12086 4.34106 4.43499 4.56465 4.66625 4.92967 5.07279 5.17178 5.25915 5.35596 5.38655 5.46482 5.47527 5.55913 5.57780 5.68811 5.69268 5.72354 5.91170 5.92561 6.06348 6.08754 6.15706 6.26754 6.28927 6.41100 6.47375 6.59084 6.69182 6.74481 6.87409 7.00593 7.07471 7.49710 7.98703 8.12283 8.41284 9.18970 9.91440 10.11262 11.40326 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013909 B = 0.004224 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.555020 B = 6627.860156 C = 7262.407872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.121 4.121 3 C 0.208 3.792 4 N -0.739 5.739 5 C -0.234 4.234 6 H 0.092 0.908 7 C 0.007 3.993 8 N -0.933 5.933 9 Si 0.878 3.122 10 H -0.285 1.285 11 H -0.280 1.280 12 H -0.293 1.293 13 C -0.134 4.134 14 C 0.109 3.891 15 N -0.585 5.585 16 C 0.561 3.439 17 O -0.530 6.530 18 C -0.188 4.188 19 C 0.161 3.839 20 F -0.120 7.120 21 C -0.166 4.166 22 C -0.050 4.050 23 C -0.165 4.165 24 C 0.161 3.839 25 F -0.119 7.119 26 C 0.120 3.880 27 C -0.133 4.133 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.360 0.640 34 H 0.258 0.742 35 H 0.078 0.922 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.149 0.851 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.051 0.949 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 6.646 22.609 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.161 4.161 3 C 0.117 3.883 4 N -0.383 5.383 5 C -0.363 4.363 6 H 0.110 0.890 7 C -0.188 4.188 8 N -0.580 5.580 9 Si 0.709 3.291 10 H -0.212 1.212 11 H -0.207 1.207 12 H -0.220 1.220 13 C -0.172 4.172 14 C -0.014 4.014 15 N -0.317 5.317 16 C 0.346 3.654 17 O -0.407 6.407 18 C -0.193 4.193 19 C 0.140 3.860 20 F -0.098 7.098 21 C -0.185 4.185 22 C -0.068 4.068 23 C -0.184 4.184 24 C 0.140 3.860 25 F -0.097 7.097 26 C -0.001 4.001 27 C -0.173 4.173 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.193 0.807 34 H 0.069 0.931 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.167 0.833 40 H 0.166 0.834 41 H 0.167 0.833 42 H 0.099 0.901 43 H 0.108 0.892 44 H 0.070 0.930 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.986 6.484 22.178 23.127 hybrid contribution -0.899 0.932 -0.179 1.307 sum 0.088 7.416 21.999 23.215 Atomic orbital electron populations 1.21661 0.96215 1.00436 1.01531 1.21851 0.96247 0.97460 1.00527 1.19501 0.91167 0.91256 0.86330 1.42855 1.59505 1.33664 1.02241 1.18939 1.21193 1.15212 0.80996 0.89024 1.24628 0.99777 0.99232 0.95187 1.69684 1.46776 1.43959 0.97625 0.86664 0.82223 0.83317 0.76849 1.21223 1.20650 1.21979 1.22167 1.01515 0.94683 0.98864 1.21747 0.80230 0.98356 1.01041 1.48102 1.07291 1.50620 1.25651 1.17743 0.86222 0.79327 0.82105 1.90803 1.14963 1.61376 1.73545 1.20041 1.08550 0.94862 0.95872 1.17319 0.97113 0.78945 0.92584 1.91587 1.88777 1.32890 1.96527 1.21175 1.03170 0.95868 0.98261 1.20975 0.95420 0.93049 0.97330 1.21189 1.03615 1.01972 0.91652 1.17363 0.97752 0.88477 0.82383 1.91602 1.93216 1.79958 1.44933 1.21696 0.99269 0.92773 0.86361 1.22276 0.97680 0.95350 1.01948 0.94398 0.94386 0.90804 0.91532 0.93862 0.80662 0.93145 0.90307 0.91278 0.91139 0.90518 0.83345 0.83416 0.83338 0.90053 0.89224 0.93004 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 9.41 37.16 0.35 -1.96 16 2 C -0.12 -2.04 4.74 -26.73 -0.13 -2.17 16 3 C 0.21 3.61 0.43 -131.78 -0.06 3.55 16 4 N -0.74 -15.41 2.85 -47.20 -0.13 -15.54 16 5 C -0.23 -5.94 9.13 -15.06 -0.14 -6.08 16 6 H 0.09 2.54 6.98 -52.49 -0.37 2.17 16 7 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 8 N -0.93 -28.19 13.97 55.49 0.78 -27.41 16 9 Si 0.88 21.23 27.78 -169.99 -4.72 16.51 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.31 6.45 56.52 0.36 -5.95 16 12 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 13 C -0.13 -1.94 4.74 -26.62 -0.13 -2.06 16 14 C 0.11 1.61 6.06 -3.73 -0.02 1.59 16 15 N -0.59 -9.84 2.97 -174.01 -0.52 -10.35 16 16 C 0.56 9.71 6.43 -12.47 -0.08 9.63 16 17 O -0.53 -10.89 16.52 5.29 0.09 -10.81 16 18 C -0.19 -2.58 3.65 -104.86 -0.38 -2.96 16 19 C 0.16 1.84 7.13 -38.97 -0.28 1.57 16 20 F -0.12 -1.55 16.83 2.25 0.04 -1.52 16 21 C -0.17 -1.26 10.01 -39.56 -0.40 -1.66 16 22 C -0.05 -0.30 10.03 -39.53 -0.40 -0.70 16 23 C -0.17 -1.32 10.01 -39.56 -0.40 -1.71 16 24 C 0.16 1.93 7.29 -38.97 -0.28 1.65 16 25 F -0.12 -1.68 16.83 2.25 0.04 -1.65 16 26 C 0.12 2.19 6.17 -3.71 -0.02 2.16 16 27 C -0.13 -2.32 4.68 -26.61 -0.12 -2.44 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.04 0.54 6.81 -51.93 -0.35 0.19 16 30 H 0.07 1.43 7.20 -51.93 -0.37 1.05 16 31 H 0.07 1.26 7.64 -51.93 -0.40 0.86 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.36 7.56 4.36 -40.82 -0.18 7.38 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.08 1.06 6.63 -51.93 -0.34 0.72 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.88 6.21 -51.93 -0.32 0.56 16 38 H 0.08 1.23 6.97 -51.93 -0.36 0.87 16 39 H 0.15 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.15 0.37 8.06 -52.49 -0.42 -0.05 16 41 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.08 1.52 7.00 -51.93 -0.36 1.15 16 43 H 0.09 1.83 7.74 -51.93 -0.40 1.43 16 44 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.08 1.58 7.15 -51.93 -0.37 1.21 16 LS Contribution 363.59 15.07 5.48 5.48 Total: -1.00 -31.91 363.59 -7.50 -39.41 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.97 Total: 7.35 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -2.58 Total: -1.48 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.12 Total: -53.31 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 9 Polarization: -3.24 SS G_CDS: 0.08 Total: -3.16 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.72 Total: 16.51 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.91 -7.50 -39.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484819621.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.524 kcal (2) G-P(sol) polarization free energy of solvation -31.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds