Wall clock time and date at job start Tue Mar 31 2020 21:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.46717 * 2 1 4 4 H 1.09000 * 109.47047 * 55.00174 * 3 2 1 5 5 N 1.46497 * 109.47273 * 294.99865 * 3 2 1 6 6 C 1.34779 * 119.99919 * 85.00350 * 5 3 2 7 7 O 1.21279 * 119.99937 * 359.97438 * 6 5 3 8 8 C 1.50700 * 119.99909 * 179.97438 * 6 5 3 9 9 S 1.80997 * 109.47064 * 180.02562 * 8 6 5 10 10 C 1.76197 * 100.00120 * 179.97438 * 9 8 6 11 11 H 1.08004 * 119.99996 * 359.97438 * 10 9 8 12 12 C 1.38797 * 120.00220 * 180.02562 * 10 9 8 13 13 N 1.31634 * 119.99868 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00115 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47231 * 89.99880 * 14 12 10 16 16 H 1.48501 * 109.47111 * 209.99471 * 14 12 10 17 17 H 1.48500 * 109.47315 * 329.99973 * 14 12 10 18 18 C 1.50706 * 109.46749 * 174.99764 * 3 2 1 19 19 N 1.30686 * 126.43077 * 74.97796 * 18 3 2 20 20 N 1.28752 * 109.70157 * 179.64591 * 19 18 3 21 21 C 1.30256 * 109.53982 * 359.76592 * 20 19 18 22 22 N 1.35134 * 126.43464 * 254.97371 * 18 3 2 23 23 C 1.46315 * 127.22729 * 1.43996 * 22 18 3 24 24 C 1.53038 * 109.37272 * 207.32599 * 23 22 18 25 25 C 1.52806 * 109.74495 * 270.76302 * 24 23 22 26 26 C 1.52562 * 110.47925 * 61.43405 * 25 24 23 27 27 C 1.50672 * 127.18944 * 180.82649 * 21 20 19 28 28 H 1.09006 * 109.47351 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47632 * 299.99558 * 1 2 3 30 30 H 1.09003 * 109.47337 * 60.00373 * 1 2 3 31 31 H 1.09002 * 109.47028 * 239.99997 * 2 1 3 32 32 H 1.08997 * 109.47171 * 120.00047 * 2 1 3 33 33 H 0.97004 * 119.99866 * 264.99725 * 5 3 2 34 34 H 1.09008 * 109.47121 * 299.99969 * 8 6 5 35 35 H 1.09002 * 109.47086 * 59.99879 * 8 6 5 36 36 H 0.97005 * 120.00012 * 180.02562 * 13 12 10 37 37 H 1.09004 * 109.48747 * 327.32036 * 23 22 18 38 38 H 1.09002 * 109.48530 * 87.35203 * 23 22 18 39 39 H 1.08999 * 109.38611 * 150.70004 * 24 23 22 40 40 H 1.09001 * 109.44326 * 30.86528 * 24 23 22 41 41 H 1.09002 * 109.26973 * 301.18509 * 25 24 23 42 42 H 1.08996 * 109.27077 * 181.68068 * 25 24 23 43 43 H 1.08995 * 109.45225 * 153.48160 * 26 25 24 44 44 H 1.09000 * 109.45309 * 273.43244 * 26 25 24 45 45 H 1.09005 * 109.53366 * 107.08596 * 27 21 20 46 46 H 1.08998 * 109.54109 * 346.84361 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9815 0.8418 5 7 1.6523 2.0974 -1.2518 6 6 0.4350 2.6644 -1.3669 7 8 -0.3397 2.6318 -0.4344 8 6 0.0365 3.3386 -2.6544 9 16 -1.6419 3.9972 -2.4962 10 6 -1.8431 4.7094 -4.0952 11 1 -1.0427 4.6492 -4.8178 12 6 -3.0298 5.3489 -4.4258 13 7 -4.0052 5.4228 -3.5449 14 14 -3.2434 6.1034 -6.1213 15 1 -3.8205 5.0927 -7.0437 16 1 -4.1569 7.2708 -6.0321 17 1 -1.9227 6.5463 -6.6359 18 6 3.5418 1.4443 0.1239 19 7 4.3985 1.1433 -0.8160 20 7 5.5981 1.2584 -0.3630 21 6 5.5591 1.6417 0.8812 22 7 4.2557 1.7575 1.2277 23 6 3.7341 2.1322 2.5424 24 6 4.7523 3.0235 3.2573 25 6 5.7228 2.1577 4.0595 26 6 6.4952 1.2234 3.1334 27 6 6.7316 1.9147 1.7873 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.2719 2.1232 -1.9977 34 1 0.7280 4.1542 -2.8666 35 1 0.0679 2.6145 -3.4686 36 1 -4.8347 5.8694 -3.7761 37 1 2.7970 2.6755 2.4205 38 1 3.5590 1.2334 3.1337 39 1 4.2291 3.7016 3.9315 40 1 5.3078 3.6032 2.5201 41 1 5.1626 1.5651 4.7828 42 1 6.4254 2.8011 4.5890 43 1 7.4546 0.9743 3.5869 44 1 5.9202 0.3108 2.9764 45 1 6.8304 2.9893 1.9417 46 1 7.6423 1.5254 1.3324 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264570801.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:05 Heat of formation + Delta-G solvation = 28.720999 kcal Electronic energy + Delta-G solvation = -27185.502530 eV Core-core repulsion = 23430.309713 eV Total energy + Delta-G solvation = -3755.192817 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.60933 -39.57723 -38.25397 -36.01681 -34.42418 -32.43209 -32.39558 -32.09304 -30.38737 -29.07097 -27.04081 -26.20194 -25.44752 -25.08975 -22.43445 -21.24211 -20.87773 -20.55839 -20.05037 -18.01000 -17.21915 -17.00758 -16.42897 -16.21459 -15.67329 -15.56841 -15.36314 -14.79624 -14.63102 -14.44585 -14.07231 -13.86392 -13.56793 -13.42489 -13.23156 -12.79436 -12.65841 -12.55170 -12.39321 -11.96923 -11.85428 -11.78405 -11.54121 -11.47544 -11.31475 -11.18030 -11.05305 -11.01386 -10.85550 -10.74733 -10.47660 -10.37557 -9.81493 -9.52085 -9.23143 -9.06419 -8.94203 -8.24684 -6.49732 -6.21575 -3.91767 1.48122 2.07840 2.59941 3.00912 3.06052 3.23449 3.28957 3.33461 3.69549 3.76963 3.92011 3.95873 4.02720 4.20792 4.21104 4.48658 4.54949 4.59258 4.70182 4.85600 4.90466 5.01456 5.11148 5.12206 5.13820 5.14065 5.24162 5.27883 5.40846 5.46689 5.53105 5.55384 5.63762 5.67595 5.72916 5.80859 5.88995 5.91577 6.01189 6.16692 6.19930 6.50066 6.55618 6.59186 7.60744 7.67213 8.36137 8.49424 8.55597 9.24292 10.85810 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.020517 B = 0.002339 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.367389 B =11969.594754 C =12125.611344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.124 4.124 3 C 0.241 3.759 4 H 0.101 0.899 5 N -0.726 5.726 6 C 0.537 3.463 7 O -0.512 6.512 8 C -0.153 4.153 9 S -0.058 6.058 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.169 3.831 19 N -0.283 5.283 20 N -0.291 5.291 21 C 0.179 3.821 22 N -0.460 5.460 23 C 0.098 3.902 24 C -0.141 4.141 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.036 4.036 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.408 0.592 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.268 0.732 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.093 0.907 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.172 -8.659 16.983 28.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C 0.132 3.868 4 H 0.119 0.881 5 N -0.382 5.382 6 C 0.324 3.676 7 O -0.387 6.387 8 C -0.304 4.304 9 S 0.169 5.831 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.504 5.504 14 Si 0.745 3.255 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.099 4.099 19 N -0.124 5.124 20 N -0.131 5.131 21 C -0.089 4.089 22 N -0.151 5.151 23 C -0.024 4.024 24 C -0.178 4.178 25 C -0.162 4.162 26 C -0.162 4.162 27 C -0.075 4.075 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.243 0.757 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.078 0.922 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.084 0.916 45 H 0.111 0.889 46 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 20.228 -9.047 17.253 28.084 hybrid contribution 0.551 0.900 -1.295 1.671 sum 20.780 -8.147 15.957 27.437 Atomic orbital electron populations 1.21828 0.93328 1.01143 1.04055 1.21922 0.97836 0.93933 1.02668 1.19047 0.82113 0.95487 0.90115 0.88103 1.45990 1.17703 1.59048 1.15431 1.20288 0.80399 0.77139 0.89798 1.90702 1.50381 1.57471 1.40101 1.23540 1.07008 1.02928 0.96915 1.85308 1.06311 1.70863 1.20624 1.22876 1.03965 1.41929 0.99527 0.90889 1.24985 0.94846 0.95559 0.98179 1.70017 1.05001 1.41149 1.34207 0.86172 0.78245 0.78655 0.82469 1.20240 1.20780 1.19681 1.24742 0.97399 1.03465 0.84326 1.74308 0.95033 1.18668 1.24370 1.74236 1.14656 1.17734 1.06507 1.24671 0.85507 1.03821 0.94854 1.46011 1.06697 1.50538 1.11807 1.22122 0.98900 1.00908 0.80492 1.22011 0.97300 0.98267 1.00261 1.21615 0.98341 0.98248 0.97994 1.21622 1.01576 0.98814 0.94214 1.20218 0.92699 1.02286 0.92322 0.93108 0.91942 0.91341 0.90728 0.91714 0.75689 0.89180 0.88968 0.92214 0.88139 0.88915 0.89053 0.89985 0.91090 0.90763 0.90077 0.91610 0.88894 0.88137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.51 37.16 0.32 -1.65 16 2 C -0.12 -1.46 5.59 -26.73 -0.15 -1.61 16 3 C 0.24 3.02 2.65 -69.08 -0.18 2.83 16 4 H 0.10 1.26 6.41 -51.93 -0.33 0.93 16 5 N -0.73 -10.44 5.02 -54.93 -0.28 -10.71 16 6 C 0.54 9.69 6.42 -10.98 -0.07 9.62 16 7 O -0.51 -10.53 13.00 5.56 0.07 -10.46 16 8 C -0.15 -3.09 6.16 36.01 0.22 -2.87 16 9 S -0.06 -1.54 20.57 -107.50 -2.21 -3.75 16 10 C -0.53 -15.22 9.50 30.94 0.29 -14.92 16 11 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 12 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.06 13.22 55.49 0.73 -25.32 16 14 Si 0.92 21.51 29.55 -169.99 -5.02 16.49 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 C 0.17 2.10 6.82 -155.17 -1.06 1.04 16 19 N -0.28 -4.17 11.94 32.76 0.39 -3.77 16 20 N -0.29 -4.11 12.22 32.72 0.40 -3.71 16 21 C 0.18 1.87 6.92 -155.34 -1.08 0.80 16 22 N -0.46 -4.55 3.06 -110.94 -0.34 -4.89 16 23 C 0.10 0.63 6.22 -4.12 -0.03 0.60 16 24 C -0.14 -0.63 5.54 -26.81 -0.15 -0.78 16 25 C -0.12 -0.41 5.67 -27.05 -0.15 -0.56 16 26 C -0.12 -0.54 5.68 -26.87 -0.15 -0.69 16 27 C -0.04 -0.22 5.55 -27.81 -0.15 -0.38 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 30 H 0.07 1.12 5.64 -51.93 -0.29 0.83 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.41 5.53 8.37 -40.82 -0.34 5.19 16 34 H 0.09 1.72 8.14 -51.91 -0.42 1.30 16 35 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 36 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.10 0.65 7.15 -51.93 -0.37 0.28 16 38 H 0.09 0.46 7.82 -51.93 -0.41 0.06 16 39 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 40 H 0.08 0.45 5.69 -51.93 -0.30 0.16 16 41 H 0.07 0.20 8.09 -51.93 -0.42 -0.22 16 42 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 0.37 7.84 -51.93 -0.41 -0.03 16 45 H 0.09 0.47 6.33 -51.93 -0.33 0.14 16 46 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 377.22 15.07 5.68 5.68 Total: -1.00 -35.29 377.22 -9.96 -45.25 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.95 Total: 1.77 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -2.44 Total: -6.58 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.91 Total: -48.40 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.07 Total: -10.46 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.29 -9.96 -45.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264570801.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.971 kcal (2) G-P(sol) polarization free energy of solvation -35.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds