Wall clock time and date at job start Tue Mar 31 2020 21:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47536 * 2 1 4 4 C 1.52999 * 109.47203 * 239.99565 * 2 1 3 5 5 O 1.45202 * 109.47313 * 120.00073 * 2 1 3 6 6 C 1.34635 * 117.00242 * 59.99452 * 5 2 1 7 7 O 1.21519 * 119.99897 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00188 * 180.02562 * 6 5 2 9 9 C 1.46506 * 119.99875 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.52486 * 35.07740 * 9 8 6 11 11 C 1.53185 * 109.49697 * 274.99785 * 9 8 6 12 12 N 1.46925 * 108.77635 * 185.41348 * 11 9 8 13 13 C 1.36937 * 120.63233 * 233.58702 * 12 11 9 14 14 H 1.08001 * 120.00076 * 152.61499 * 13 12 11 15 15 C 1.38816 * 119.99912 * 332.61166 * 13 12 11 16 16 N 1.31623 * 119.99811 * 159.36415 * 15 13 12 17 17 Si 1.86796 * 119.99925 * 339.36507 * 15 13 12 18 18 H 1.48493 * 109.47131 * 92.92018 * 17 15 13 19 19 H 1.48501 * 109.46783 * 212.92098 * 17 15 13 20 20 H 1.48500 * 109.47262 * 332.91776 * 17 15 13 21 21 C 1.46923 * 118.73648 * 53.61112 * 12 11 9 22 22 C 1.53196 * 108.77314 * 306.38833 * 21 12 11 23 23 C 1.53033 * 109.31220 * 54.63901 * 22 21 12 24 24 H 1.09005 * 109.46351 * 58.65443 * 23 22 21 25 25 C 1.53000 * 109.46059 * 178.62413 * 23 22 21 26 26 F 1.39903 * 109.47047 * 60.00335 * 25 23 22 27 27 F 1.39900 * 109.47351 * 179.97438 * 25 23 22 28 28 F 1.39901 * 109.47337 * 299.99949 * 25 23 22 29 29 H 1.08996 * 109.47144 * 300.00221 * 1 2 3 30 30 H 1.08998 * 109.47212 * 60.00273 * 1 2 3 31 31 H 1.09001 * 109.47414 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47423 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46544 * 299.99870 * 3 2 1 34 34 H 1.09002 * 109.46931 * 59.99304 * 3 2 1 35 35 H 1.09000 * 109.47540 * 300.00029 * 4 2 1 36 36 H 1.09003 * 109.47485 * 60.00340 * 4 2 1 37 37 H 1.09002 * 109.47667 * 180.02562 * 4 2 1 38 38 H 0.96992 * 120.00267 * 359.97438 * 8 6 5 39 39 H 1.09005 * 109.58622 * 65.62901 * 11 9 8 40 40 H 1.09003 * 109.58949 * 305.20218 * 11 9 8 41 41 H 0.96997 * 119.99766 * 179.97438 * 16 15 13 42 42 H 1.08995 * 109.58989 * 66.17515 * 21 12 11 43 43 H 1.09004 * 109.58570 * 186.46376 * 21 12 11 44 44 H 1.09007 * 109.49501 * 174.59042 * 22 21 12 45 45 H 1.09001 * 109.49912 * 294.65059 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9514 -2.5097 0.5037 8 7 2.0672 -2.6654 2.4173 9 6 1.6739 -4.0669 2.5832 10 1 1.6292 -4.5507 1.6075 11 6 0.2973 -4.1359 3.2517 12 7 -0.0240 -5.5426 3.5286 13 6 -1.1983 -6.0902 3.0858 14 1 -1.2583 -7.1498 2.8852 15 6 -2.3118 -5.2836 2.8947 16 7 -3.2893 -5.6861 2.1106 17 14 -2.4227 -3.6268 3.7504 18 1 -1.8889 -2.5701 2.8541 19 1 -3.8415 -3.3311 4.0742 20 1 -1.6261 -3.6623 5.0031 21 6 0.9385 -6.3504 4.2900 22 6 2.3080 -6.2565 3.6098 23 6 2.7002 -4.7847 3.4628 24 1 2.7267 -4.3158 4.4464 25 6 4.0829 -4.6879 2.8148 26 9 4.0495 -5.2901 1.5525 27 9 4.4415 -3.3424 2.6797 28 9 5.0217 -5.3427 3.6192 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1299 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2076 -2.1393 37 1 3.1300 -0.7218 -1.2490 38 1 2.6268 -2.2366 3.0834 39 1 -0.4544 -3.7138 2.5846 40 1 0.3162 -3.5747 4.1860 41 1 -4.0675 -5.1226 1.9774 42 1 1.0097 -5.9697 5.3089 43 1 0.6086 -7.3891 4.3102 44 1 3.0519 -6.7724 4.2171 45 1 2.2575 -6.7203 2.6247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931982962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:58 Heat of formation + Delta-G solvation = -208.797835 kcal Electronic energy + Delta-G solvation = -32812.477133 eV Core-core repulsion = 28030.082364 eV Total energy + Delta-G solvation = -4782.394769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -50.05715 -47.56636 -47.48285 -40.62660 -38.73929 -36.76377 -34.59046 -33.91398 -33.08754 -31.23512 -29.49523 -27.42912 -27.31827 -26.98863 -24.07239 -23.70611 -22.21243 -21.37729 -20.32935 -19.66650 -18.41948 -18.18958 -18.02996 -17.47505 -16.81890 -16.48454 -15.87564 -15.51211 -14.91766 -14.68441 -14.53415 -14.30446 -14.24232 -14.16366 -13.92397 -13.68874 -13.65769 -13.44481 -13.41524 -13.18768 -12.99083 -12.64025 -12.51093 -12.42087 -12.18081 -11.87373 -11.84058 -11.72346 -11.53704 -11.33030 -11.21570 -10.99168 -10.95174 -10.44394 -10.41093 -10.24240 -9.97638 -9.82150 -9.56892 -9.05719 -8.65127 -7.13456 -6.00912 -3.39757 2.28206 2.80590 3.09744 3.31816 3.42876 3.45296 3.81586 4.01637 4.05951 4.26581 4.48071 4.73217 4.76212 4.78941 4.82012 4.91980 4.98112 5.21017 5.30185 5.42482 5.49270 5.52405 5.57691 5.67460 5.72634 5.76041 5.81575 5.89915 5.92533 5.95863 5.97967 6.23495 6.35063 6.38034 6.41529 6.48665 6.56060 6.67611 6.69480 7.60193 7.84258 8.25858 8.62147 8.82517 9.63348 9.95358 11.14278 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.008499 B = 0.006669 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3293.876799 B = 4197.312514 C = 6756.357051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.136 3.864 3 C -0.138 4.138 4 C -0.183 4.183 5 O -0.367 6.367 6 C 0.650 3.350 7 O -0.554 6.554 8 N -0.711 5.711 9 C 0.148 3.852 10 H 0.109 0.891 11 C 0.121 3.879 12 N -0.599 5.599 13 C -0.269 4.269 14 H 0.090 0.910 15 C 0.032 3.968 16 N -0.899 5.899 17 Si 0.877 3.123 18 H -0.286 1.286 19 H -0.301 1.301 20 H -0.271 1.271 21 C 0.149 3.851 22 C -0.132 4.132 23 C -0.133 4.133 24 H 0.115 0.885 25 C 0.451 3.549 26 F -0.178 7.178 27 F -0.184 7.184 28 F -0.186 7.186 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.403 0.597 39 H 0.090 0.910 40 H 0.032 0.968 41 H 0.264 0.736 42 H 0.031 0.969 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.050 9.223 0.505 17.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.283 6.283 6 C 0.402 3.598 7 O -0.441 6.441 8 N -0.371 5.371 9 C 0.043 3.957 10 H 0.127 0.873 11 C -0.007 4.007 12 N -0.322 5.322 13 C -0.397 4.397 14 H 0.108 0.892 15 C -0.168 4.168 16 N -0.540 5.540 17 Si 0.707 3.293 18 H -0.213 1.213 19 H -0.229 1.229 20 H -0.196 1.196 21 C 0.023 3.977 22 C -0.172 4.172 23 C -0.153 4.153 24 H 0.133 0.867 25 C 0.397 3.603 26 F -0.160 7.160 27 F -0.166 7.166 28 F -0.167 7.167 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.239 0.761 39 H 0.108 0.892 40 H 0.050 0.950 41 H 0.074 0.926 42 H 0.049 0.951 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 14.513 9.019 -0.062 17.087 hybrid contribution 0.375 1.337 0.558 1.496 sum 14.888 10.355 0.496 18.142 Atomic orbital electron populations 1.22536 0.93918 1.05616 1.02251 1.22029 0.94446 0.91332 0.82275 1.21840 1.02014 0.92756 1.02947 1.22514 1.01296 1.03861 0.96362 1.86267 1.71717 1.23875 1.46407 1.18025 0.78949 0.80441 0.82342 1.90967 1.40041 1.70019 1.43080 1.44966 1.55719 1.12609 1.23823 1.21816 0.94960 0.77851 1.01092 0.87276 1.21795 0.93437 0.87668 0.97756 1.44326 1.19507 1.06805 1.61530 1.18870 0.85666 0.95477 1.39692 0.89238 1.25257 0.95647 0.97747 0.98155 1.69827 1.09764 1.38468 1.35954 0.87035 0.76100 0.85270 0.80910 1.21319 1.22917 1.19557 1.20956 0.86816 0.97083 0.92801 1.22205 1.00554 0.90600 1.03848 1.22817 0.88681 1.02434 1.01360 0.86654 1.20803 0.88984 0.73284 0.77206 1.93185 1.96793 1.83503 1.42513 1.93124 1.93221 1.34277 1.95945 1.93158 1.68744 1.81444 1.73401 0.92275 0.91245 0.88964 0.91624 0.90292 0.91588 0.89108 0.91293 0.92349 0.76126 0.89226 0.95016 0.92594 0.95144 0.90451 0.90389 0.89993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.65 8.37 37.15 0.31 -2.34 16 2 C 0.14 1.82 1.13 -90.63 -0.10 1.72 16 3 C -0.14 -1.35 8.85 37.16 0.33 -1.02 16 4 C -0.18 -2.38 8.37 37.16 0.31 -2.07 16 5 O -0.37 -5.74 9.94 -40.31 -0.40 -6.14 16 6 C 0.65 11.61 8.02 54.06 0.43 12.05 16 7 O -0.55 -11.57 11.55 -19.29 -0.22 -11.80 16 8 N -0.71 -11.38 3.82 -58.61 -0.22 -11.61 16 9 C 0.15 2.59 1.92 -67.81 -0.13 2.46 16 10 H 0.11 2.19 7.29 -51.93 -0.38 1.81 16 11 C 0.12 2.55 3.78 -3.71 -0.01 2.54 16 12 N -0.60 -13.36 2.77 -172.32 -0.48 -13.83 16 13 C -0.27 -7.27 10.03 -15.06 -0.15 -7.42 16 14 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 15 C 0.03 0.92 5.23 -17.43 -0.09 0.83 16 16 N -0.90 -27.40 13.97 55.49 0.78 -26.62 16 17 Si 0.88 22.28 24.34 -169.99 -4.14 18.14 16 18 H -0.29 -7.29 6.62 56.52 0.37 -6.92 16 19 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 20 H -0.27 -6.58 6.64 56.52 0.38 -6.21 16 21 C 0.15 2.57 6.52 -3.71 -0.02 2.55 16 22 C -0.13 -1.88 5.11 -26.61 -0.14 -2.02 16 23 C -0.13 -1.85 1.82 -90.58 -0.16 -2.02 16 24 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 25 C 0.45 6.14 2.68 37.16 0.10 6.24 16 26 F -0.18 -2.73 16.33 2.25 0.04 -2.70 16 27 F -0.18 -2.47 14.66 2.25 0.03 -2.44 16 28 F -0.19 -2.39 16.78 2.25 0.04 -2.35 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.66 5.88 -51.93 -0.31 1.35 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 1.46 5.88 -51.93 -0.31 1.15 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.40 5.35 7.45 -40.82 -0.30 5.04 16 39 H 0.09 2.23 4.50 -51.93 -0.23 2.00 16 40 H 0.03 0.65 7.07 -51.93 -0.37 0.28 16 41 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 42 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.08 1.32 7.93 -51.93 -0.41 0.90 16 44 H 0.08 0.90 7.77 -51.92 -0.40 0.50 16 45 H 0.08 1.26 7.84 -51.93 -0.41 0.86 16 LS Contribution 357.61 15.07 5.39 5.39 Total: -1.00 -31.58 357.61 -5.05 -36.64 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -6.53 Total: 5.84 kcal Atomic # 6 Polarization: 10.81 SS G_CDS: 0.67 Total: 11.48 kcal Atomic # 7 Polarization: -52.14 SS G_CDS: 0.07 Total: -52.06 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.62 Total: -17.93 kcal Atomic # 9 Polarization: -7.60 SS G_CDS: 0.11 Total: -7.49 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.14 Total: 18.14 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.58 -5.05 -36.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931982962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.161 kcal (2) G-P(sol) polarization free energy of solvation -31.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds