Wall clock time and date at job start Tue Mar 31 2020 21:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47536 * 2 1 4 4 C 1.52999 * 109.47203 * 239.99565 * 2 1 3 5 5 O 1.45202 * 109.47313 * 120.00073 * 2 1 3 6 6 C 1.34635 * 117.00242 * 59.99452 * 5 2 1 7 7 O 1.21519 * 119.99897 * 0.02562 * 6 5 2 8 8 N 1.34778 * 120.00188 * 180.02562 * 6 5 2 9 9 C 1.46506 * 119.99875 * 180.02562 * 8 6 5 10 10 H 1.09004 * 109.52486 * 35.07740 * 9 8 6 11 11 C 1.53185 * 109.49697 * 274.99785 * 9 8 6 12 12 N 1.46925 * 108.77635 * 185.41348 * 11 9 8 13 13 C 1.36937 * 120.63233 * 233.58702 * 12 11 9 14 14 H 1.08001 * 120.00076 * 152.61499 * 13 12 11 15 15 C 1.38816 * 119.99912 * 332.61166 * 13 12 11 16 16 N 1.31623 * 119.99811 * 159.36415 * 15 13 12 17 17 Si 1.86796 * 119.99925 * 339.36507 * 15 13 12 18 18 H 1.48493 * 109.47131 * 92.92018 * 17 15 13 19 19 H 1.48501 * 109.46783 * 212.92098 * 17 15 13 20 20 H 1.48500 * 109.47262 * 332.91776 * 17 15 13 21 21 C 1.46923 * 118.73648 * 53.61112 * 12 11 9 22 22 C 1.53196 * 108.77314 * 306.38833 * 21 12 11 23 23 C 1.53033 * 109.31220 * 54.63901 * 22 21 12 24 24 H 1.09005 * 109.46351 * 58.65443 * 23 22 21 25 25 C 1.53000 * 109.46059 * 178.62413 * 23 22 21 26 26 F 1.39903 * 109.47047 * 60.00335 * 25 23 22 27 27 F 1.39900 * 109.47351 * 179.97438 * 25 23 22 28 28 F 1.39901 * 109.47337 * 299.99949 * 25 23 22 29 29 H 1.08996 * 109.47144 * 300.00221 * 1 2 3 30 30 H 1.08998 * 109.47212 * 60.00273 * 1 2 3 31 31 H 1.09001 * 109.47414 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47423 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46544 * 299.99870 * 3 2 1 34 34 H 1.09002 * 109.46931 * 59.99304 * 3 2 1 35 35 H 1.09000 * 109.47540 * 300.00029 * 4 2 1 36 36 H 1.09003 * 109.47485 * 60.00340 * 4 2 1 37 37 H 1.09002 * 109.47667 * 180.02562 * 4 2 1 38 38 H 0.96992 * 120.00267 * 359.97438 * 8 6 5 39 39 H 1.09005 * 109.58622 * 65.62901 * 11 9 8 40 40 H 1.09003 * 109.58949 * 305.20218 * 11 9 8 41 41 H 0.96997 * 119.99766 * 179.97438 * 16 15 13 42 42 H 1.08995 * 109.58989 * 66.17515 * 21 12 11 43 43 H 1.09004 * 109.58570 * 186.46376 * 21 12 11 44 44 H 1.09007 * 109.49501 * 174.59042 * 22 21 12 45 45 H 1.09001 * 109.49912 * 294.65059 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1855 6 6 1.6522 -1.9723 1.3384 7 8 0.9514 -2.5097 0.5037 8 7 2.0672 -2.6654 2.4173 9 6 1.6739 -4.0669 2.5832 10 1 1.6292 -4.5507 1.6075 11 6 0.2973 -4.1359 3.2517 12 7 -0.0240 -5.5426 3.5286 13 6 -1.1983 -6.0902 3.0858 14 1 -1.2583 -7.1498 2.8852 15 6 -2.3118 -5.2836 2.8947 16 7 -3.2893 -5.6861 2.1106 17 14 -2.4227 -3.6268 3.7504 18 1 -1.8889 -2.5701 2.8541 19 1 -3.8415 -3.3311 4.0742 20 1 -1.6261 -3.6623 5.0031 21 6 0.9385 -6.3504 4.2900 22 6 2.3080 -6.2565 3.6098 23 6 2.7002 -4.7847 3.4628 24 1 2.7267 -4.3158 4.4464 25 6 4.0829 -4.6879 2.8148 26 9 4.0495 -5.2901 1.5525 27 9 4.4415 -3.3424 2.6797 28 9 5.0217 -5.3427 3.6192 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1299 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8901 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2076 -2.1393 37 1 3.1300 -0.7218 -1.2490 38 1 2.6268 -2.2366 3.0834 39 1 -0.4544 -3.7138 2.5846 40 1 0.3162 -3.5747 4.1860 41 1 -4.0675 -5.1226 1.9774 42 1 1.0097 -5.9697 5.3089 43 1 0.6086 -7.3891 4.3102 44 1 3.0519 -6.7724 4.2171 45 1 2.2575 -6.7203 2.6247 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931982962.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:13:57 Heat of formation + Delta-G solvation = -230.132843 kcal Electronic energy + Delta-G solvation = -32813.402288 eV Core-core repulsion = 28030.082364 eV Total energy + Delta-G solvation = -4783.319924 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -51.15153 -48.63423 -48.60093 -41.94874 -40.13586 -38.10988 -36.16581 -35.22483 -34.51712 -33.12224 -30.92095 -28.57555 -28.41417 -28.30669 -25.69358 -25.13708 -23.57319 -22.76269 -21.76829 -20.93067 -19.60398 -19.34318 -19.27826 -18.97951 -18.38830 -17.78010 -17.22506 -17.10026 -16.44530 -16.09753 -15.83149 -15.55678 -15.40323 -15.37062 -15.06007 -15.01991 -14.79834 -14.78261 -14.65679 -14.53925 -14.50545 -14.27777 -13.96051 -13.37114 -13.27487 -13.22266 -12.98446 -12.89434 -12.88375 -12.69698 -12.63546 -12.43108 -12.34381 -12.12376 -11.85828 -11.76307 -11.52576 -11.42865 -11.16101 -10.86294 -10.39174 -9.02399 -8.20634 -5.53355 1.01824 1.27421 1.32635 1.41625 1.68076 1.70325 2.37750 2.68352 2.82008 2.86885 2.97709 3.17859 3.36266 3.59205 3.72497 3.76077 3.80015 3.91508 3.95974 4.07108 4.16486 4.46223 4.52750 4.57057 4.65129 4.66263 4.68406 4.72049 4.79476 4.81727 4.85696 4.86640 5.03730 5.05533 5.17323 5.25208 5.32296 5.33924 5.52087 5.82774 6.10244 6.30755 6.84517 7.29472 7.56200 7.93620 8.98591 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.008499 B = 0.006669 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3293.876799 B = 4197.312514 C = 6756.357051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.123 3.877 3 C -0.130 4.130 4 C -0.179 4.179 5 O -0.363 6.363 6 C 0.645 3.355 7 O -0.590 6.590 8 N -0.699 5.699 9 C 0.160 3.840 10 H 0.076 0.924 11 C 0.121 3.879 12 N -0.614 5.614 13 C -0.247 4.247 14 H 0.062 0.938 15 C -0.031 4.031 16 N -0.952 5.952 17 Si 0.938 3.062 18 H -0.296 1.296 19 H -0.310 1.310 20 H -0.245 1.245 21 C 0.144 3.856 22 C -0.124 4.124 23 C -0.125 4.125 24 H 0.152 0.848 25 C 0.459 3.541 26 F -0.192 7.192 27 F -0.181 7.181 28 F -0.175 7.175 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.419 0.581 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.260 0.740 42 H 0.060 0.940 43 H 0.074 0.926 44 H 0.118 0.882 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.100 11.170 2.317 21.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.087 3.913 3 C -0.187 4.187 4 C -0.236 4.236 5 O -0.278 6.278 6 C 0.398 3.602 7 O -0.480 6.480 8 N -0.361 5.361 9 C 0.054 3.946 10 H 0.094 0.906 11 C -0.006 4.006 12 N -0.338 5.338 13 C -0.377 4.377 14 H 0.080 0.920 15 C -0.226 4.226 16 N -0.597 5.597 17 Si 0.768 3.232 18 H -0.224 1.224 19 H -0.239 1.239 20 H -0.168 1.168 21 C 0.020 3.980 22 C -0.163 4.163 23 C -0.145 4.145 24 H 0.170 0.830 25 C 0.405 3.595 26 F -0.173 7.173 27 F -0.163 7.163 28 F -0.156 7.156 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.112 0.888 37 H 0.086 0.914 38 H 0.258 0.742 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.137 0.863 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.649 10.988 1.805 20.868 hybrid contribution -0.496 0.683 -0.076 0.848 sum 17.153 11.671 1.729 20.819 Atomic orbital electron populations 1.22504 0.94948 1.03071 1.03615 1.22466 0.93916 0.93289 0.81621 1.21861 1.02650 0.89752 1.04456 1.22465 1.01817 1.01922 0.97427 1.86288 1.71455 1.22479 1.47542 1.18283 0.78505 0.81115 0.82300 1.90974 1.41576 1.70959 1.44486 1.44806 1.55434 1.12047 1.23813 1.21345 0.94598 0.78805 0.99833 0.90594 1.21686 0.94266 0.86900 0.97752 1.44445 1.19006 1.07675 1.62686 1.18863 0.87242 0.94346 1.37229 0.92016 1.25874 0.95894 1.01344 0.99475 1.69963 1.10863 1.40244 1.38637 0.86043 0.75568 0.81173 0.80453 1.22406 1.23911 1.16839 1.21216 0.86781 0.96295 0.93741 1.22102 0.99748 0.91044 1.03387 1.22781 0.87693 1.01985 1.02071 0.83047 1.20566 0.88832 0.73387 0.76692 1.93175 1.96846 1.83764 1.43529 1.93132 1.93161 1.34063 1.95906 1.93185 1.68249 1.81232 1.72956 0.92196 0.88626 0.93330 0.90596 0.87764 0.91112 0.92825 0.88823 0.91368 0.74175 0.93522 0.93138 0.93134 0.92184 0.90731 0.86346 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.21 8.37 71.98 0.60 -4.61 16 2 C 0.12 3.14 1.13 -10.80 -0.01 3.13 16 3 C -0.13 -2.13 8.85 71.98 0.64 -1.49 16 4 C -0.18 -4.52 8.37 71.98 0.60 -3.91 16 5 O -0.36 -10.95 9.94 -55.44 -0.55 -11.50 16 6 C 0.64 23.08 8.02 129.79 1.04 24.12 16 7 O -0.59 -25.83 11.55 19.78 0.23 -25.61 16 8 N -0.70 -21.49 3.82 -569.74 -2.17 -23.66 16 9 C 0.16 5.44 1.92 45.07 0.09 5.53 16 10 H 0.08 3.13 7.29 -2.38 -0.02 3.11 16 11 C 0.12 5.01 3.78 86.36 0.33 5.34 16 12 N -0.61 -27.04 2.77 -699.10 -1.94 -28.98 16 13 C -0.25 -13.72 10.03 84.03 0.84 -12.87 16 14 H 0.06 3.69 8.06 -2.91 -0.02 3.67 16 15 C -0.03 -1.81 5.23 84.86 0.44 -1.36 16 16 N -0.95 -61.01 13.97 21.65 0.30 -60.71 16 17 Si 0.94 47.49 24.34 68.60 1.67 49.16 16 18 H -0.30 -15.31 6.62 99.48 0.66 -14.65 16 19 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 20 H -0.24 -11.18 6.64 99.48 0.66 -10.52 16 21 C 0.14 4.58 6.52 86.36 0.56 5.14 16 22 C -0.12 -3.13 5.11 30.67 0.16 -2.97 16 23 C -0.13 -3.09 1.82 -10.77 -0.02 -3.11 16 24 H 0.15 2.76 8.14 -2.38 -0.02 2.74 16 25 C 0.46 11.08 2.68 71.98 0.19 11.27 16 26 F -0.19 -5.58 16.33 44.97 0.73 -4.84 16 27 F -0.18 -4.30 14.66 44.97 0.66 -3.64 16 28 F -0.17 -3.76 16.78 44.97 0.75 -3.01 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.05 1.82 5.88 -2.39 -0.01 1.81 16 32 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 1.78 5.88 -2.39 -0.01 1.77 16 36 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.42 9.97 7.45 -92.71 -0.69 9.28 16 39 H 0.05 2.37 4.50 -2.38 -0.01 2.36 16 40 H 0.05 1.91 7.07 -2.39 -0.02 1.90 16 41 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 42 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.07 2.41 7.93 -2.38 -0.02 2.40 16 44 H 0.12 2.14 7.77 -2.38 -0.02 2.12 16 45 H 0.06 1.89 7.84 -2.39 -0.02 1.87 16 Total: -1.00 -74.12 357.61 5.39 -68.73 By element: Atomic # 1 Polarization: 19.62 SS G_CDS: 0.24 Total: 19.86 kcal Atomic # 6 Polarization: 18.74 SS G_CDS: 5.46 Total: 24.20 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -3.81 Total: -113.35 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -0.32 Total: -37.10 kcal Atomic # 9 Polarization: -13.64 SS G_CDS: 2.15 Total: -11.49 kcal Atomic # 14 Polarization: 47.49 SS G_CDS: 1.67 Total: 49.16 kcal Total: -74.12 5.39 -68.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931982962.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.407 kcal (2) G-P(sol) polarization free energy of solvation -74.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -230.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds