Wall clock time and date at job start Tue Mar 31 2020 21:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46756 * 2 1 4 4 C 1.53001 * 109.47040 * 240.00468 * 2 1 3 5 5 O 1.45198 * 109.47268 * 119.99941 * 2 1 3 6 6 C 1.34629 * 116.99917 * 60.00366 * 5 2 1 7 7 O 1.21512 * 120.00172 * 0.02562 * 6 5 2 8 8 N 1.34782 * 120.00033 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00280 * 180.02562 * 8 6 5 10 10 H 1.09003 * 109.49764 * 35.05886 * 9 8 6 11 11 C 1.53195 * 109.49522 * 274.99868 * 9 8 6 12 12 N 1.46927 * 108.77171 * 294.68507 * 11 9 8 13 13 C 1.36936 * 120.63087 * 126.37549 * 12 11 9 14 14 H 1.07995 * 119.99913 * 332.64066 * 13 12 11 15 15 C 1.38814 * 120.00130 * 152.64882 * 13 12 11 16 16 N 1.31614 * 120.00166 * 159.33785 * 15 13 12 17 17 Si 1.86805 * 119.99825 * 339.33205 * 15 13 12 18 18 H 1.48502 * 109.46940 * 92.96921 * 17 15 13 19 19 H 1.48497 * 109.47139 * 212.96801 * 17 15 13 20 20 H 1.48499 * 109.47200 * 332.96693 * 17 15 13 21 21 C 1.46934 * 118.73704 * 306.38716 * 12 11 9 22 22 C 1.53192 * 108.77362 * 53.61387 * 21 12 11 23 23 C 1.53034 * 109.33852 * 305.34777 * 22 21 12 24 24 H 1.09003 * 109.46275 * 301.36299 * 23 22 21 25 25 C 1.53003 * 109.45889 * 181.39986 * 23 22 21 26 26 F 1.39905 * 109.47091 * 60.00218 * 25 23 22 27 27 F 1.39904 * 109.47128 * 179.97438 * 25 23 22 28 28 F 1.39894 * 109.47443 * 299.99878 * 25 23 22 29 29 H 1.08997 * 109.46938 * 299.99659 * 1 2 3 30 30 H 1.08996 * 109.47269 * 60.00225 * 1 2 3 31 31 H 1.09006 * 109.46748 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46917 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47003 * 300.00202 * 3 2 1 34 34 H 1.08999 * 109.47213 * 59.99906 * 3 2 1 35 35 H 1.09006 * 109.46752 * 299.99265 * 4 2 1 36 36 H 1.08996 * 109.47655 * 59.99543 * 4 2 1 37 37 H 1.09001 * 109.46899 * 179.97438 * 4 2 1 38 38 H 0.97009 * 119.99800 * 359.97438 * 8 6 5 39 39 H 1.08998 * 109.58535 * 174.89474 * 11 9 8 40 40 H 1.09003 * 109.70411 * 54.54007 * 11 9 8 41 41 H 0.97002 * 120.00126 * 180.02562 * 16 15 13 42 42 H 1.08997 * 109.58866 * 293.82888 * 21 12 11 43 43 H 1.09002 * 109.70156 * 173.47349 * 21 12 11 44 44 H 1.08999 * 109.49551 * 65.31549 * 22 21 12 45 45 H 1.09000 * 109.49552 * 185.37811 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6844 1.1855 6 6 1.6524 -1.9722 1.3383 7 8 0.9518 -2.5097 0.5035 8 7 2.0674 -2.6654 2.4171 9 6 1.6743 -4.0669 2.5831 10 1 1.6295 -4.5502 1.6071 11 6 0.2976 -4.1360 3.2515 12 7 0.4060 -3.5975 4.6142 13 6 -0.4255 -2.5947 5.0363 14 1 -0.8404 -1.9003 4.3209 15 6 -0.7349 -2.4707 6.3839 16 7 -1.1748 -1.3233 6.8552 17 14 -0.5271 -3.9325 7.5282 18 1 0.8194 -3.8848 8.1526 19 1 -1.5662 -3.8832 8.5879 20 1 -0.6693 -5.1916 6.7538 21 6 1.4238 -4.1552 5.5153 22 6 2.7879 -4.0859 4.8215 23 6 2.7014 -4.7847 3.4628 24 1 2.3953 -5.8210 3.6062 25 6 4.0714 -4.7476 2.7825 26 9 5.0092 -5.4048 3.5862 27 9 3.9928 -5.3869 1.5405 28 9 4.4650 -3.4178 2.5988 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1393 37 1 3.1300 -0.7207 -1.2495 38 1 2.6270 -2.2364 3.0834 39 1 -0.0364 -5.1727 3.2937 40 1 -0.4182 -3.5444 2.6807 41 1 -1.3906 -1.2366 7.7969 42 1 1.1816 -5.1935 5.7421 43 1 1.4536 -3.5769 6.4388 44 1 3.0698 -3.0430 4.6770 45 1 3.5359 -4.5827 5.4393 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931982964.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:06 Heat of formation + Delta-G solvation = -227.371632 kcal Electronic energy + Delta-G solvation = -32906.274053 eV Core-core repulsion = 28123.073865 eV Total energy + Delta-G solvation = -4783.200189 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -51.11754 -48.59084 -48.57799 -41.84773 -40.18084 -37.93319 -35.97259 -35.10488 -34.04916 -33.17012 -31.18930 -28.52738 -28.33429 -28.27310 -25.69541 -24.77249 -23.58770 -23.32187 -21.21697 -20.76940 -19.59113 -19.37708 -19.21231 -18.78529 -18.32164 -17.54850 -17.12355 -16.97765 -16.55203 -15.96586 -15.59741 -15.51840 -15.33943 -15.26648 -15.04968 -14.99304 -14.92213 -14.73388 -14.69549 -14.53290 -14.41251 -14.08935 -13.74527 -13.47563 -13.30169 -13.15090 -13.01979 -12.87265 -12.83044 -12.62840 -12.50542 -12.39602 -12.24584 -12.18985 -11.72623 -11.63534 -11.44229 -11.33915 -11.04845 -10.79054 -10.19722 -8.92663 -8.12999 -5.47197 1.23197 1.33993 1.47707 1.55836 1.72146 1.85918 2.44507 2.73179 2.87150 2.99530 3.05688 3.22284 3.32092 3.63647 3.71599 3.78803 3.83308 3.97820 4.05855 4.13274 4.36404 4.45277 4.51080 4.59889 4.63796 4.69229 4.77342 4.78182 4.78477 4.86229 4.88739 4.89615 4.95973 5.10186 5.18562 5.29790 5.31892 5.42694 5.62959 5.86662 6.13656 6.42793 6.90846 7.39711 7.61701 7.98215 9.06846 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.009530 B = 0.005812 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2937.274464 B = 4816.388301 C = 6969.672858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.123 3.877 3 C -0.135 4.135 4 C -0.174 4.174 5 O -0.376 6.376 6 C 0.651 3.349 7 O -0.591 6.591 8 N -0.690 5.690 9 C 0.155 3.845 10 H 0.108 0.892 11 C 0.140 3.860 12 N -0.610 5.610 13 C -0.241 4.241 14 H 0.037 0.963 15 C -0.036 4.036 16 N -0.959 5.959 17 Si 0.951 3.049 18 H -0.268 1.268 19 H -0.319 1.319 20 H -0.251 1.251 21 C 0.120 3.880 22 C -0.128 4.128 23 C -0.126 4.126 24 H 0.160 0.840 25 C 0.459 3.541 26 F -0.179 7.179 27 F -0.185 7.185 28 F -0.186 7.186 29 H 0.045 0.955 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.407 0.593 39 H 0.067 0.933 40 H 0.048 0.952 41 H 0.260 0.740 42 H 0.055 0.945 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.037 -4.668 -11.905 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.087 3.913 3 C -0.192 4.192 4 C -0.231 4.231 5 O -0.291 6.291 6 C 0.405 3.595 7 O -0.482 6.482 8 N -0.349 5.349 9 C 0.050 3.950 10 H 0.126 0.874 11 C 0.014 3.986 12 N -0.334 5.334 13 C -0.370 4.370 14 H 0.054 0.946 15 C -0.230 4.230 16 N -0.605 5.605 17 Si 0.779 3.221 18 H -0.194 1.194 19 H -0.249 1.249 20 H -0.175 1.175 21 C -0.004 4.004 22 C -0.168 4.168 23 C -0.146 4.146 24 H 0.177 0.823 25 C 0.405 3.595 26 F -0.161 7.161 27 F -0.167 7.167 28 F -0.167 7.167 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.245 0.755 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 11.667 -4.779 -12.270 17.593 hybrid contribution -0.068 0.124 1.030 1.039 sum 11.599 -4.656 -11.240 16.809 Atomic orbital electron populations 1.22454 0.94610 1.03529 1.02970 1.22425 0.94199 0.92894 0.81823 1.21883 1.02474 0.90808 1.04058 1.22430 1.01550 1.02234 0.96860 1.86316 1.71660 1.23420 1.47716 1.18121 0.78442 0.80721 0.82217 1.90837 1.41957 1.70823 1.44600 1.44774 1.54768 1.12424 1.22969 1.21438 0.94840 0.79242 0.99488 0.87415 1.21402 0.93910 0.98538 0.84772 1.44336 1.36678 1.41781 1.10610 1.18613 1.22665 1.03565 0.92188 0.94557 1.25942 0.99204 0.99087 0.98793 1.69993 1.50783 1.25297 1.14408 0.85873 0.76489 0.81667 0.78089 1.19409 1.24901 1.17494 1.21476 0.87433 0.97962 0.93535 1.22059 0.99654 1.01137 0.93910 1.22778 0.88928 1.06237 0.96649 0.82293 1.20588 0.88672 0.73245 0.76990 1.93180 1.68527 1.81175 1.73201 1.93177 1.96556 1.82055 1.44862 1.93146 1.92370 1.35836 1.95394 0.93575 0.88556 0.92053 0.90927 0.87466 0.92221 0.91805 0.88752 0.91855 0.75508 0.91511 0.93307 0.93083 0.92699 0.92205 0.91514 0.87502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.12 8.37 71.98 0.60 -4.52 16 2 C 0.12 3.34 1.13 -10.79 -0.01 3.33 16 3 C -0.14 -2.75 8.85 71.98 0.64 -2.12 16 4 C -0.17 -4.15 8.37 71.98 0.60 -3.55 16 5 O -0.38 -12.87 9.94 -55.38 -0.55 -13.42 16 6 C 0.65 23.53 8.02 129.79 1.04 24.57 16 7 O -0.59 -22.56 11.55 19.80 0.23 -22.33 16 8 N -0.69 -22.94 3.65 -569.64 -2.08 -25.02 16 9 C 0.16 4.58 2.13 45.09 0.10 4.68 16 10 H 0.11 3.06 7.21 -2.39 -0.02 3.04 16 11 C 0.14 5.00 6.12 86.36 0.53 5.53 16 12 N -0.61 -25.73 2.69 -699.07 -1.88 -27.61 16 13 C -0.24 -13.06 10.04 84.03 0.84 -12.22 16 14 H 0.04 2.28 8.06 -2.91 -0.02 2.26 16 15 C -0.04 -2.00 5.23 84.86 0.44 -1.56 16 16 N -0.96 -59.15 13.97 21.65 0.30 -58.85 16 17 Si 0.95 43.44 24.35 68.60 1.67 45.11 16 18 H -0.27 -11.25 6.62 99.48 0.66 -10.59 16 19 H -0.32 -15.40 7.11 99.48 0.71 -14.69 16 20 H -0.25 -10.57 6.63 99.48 0.66 -9.91 16 21 C 0.12 4.26 4.20 86.36 0.36 4.62 16 22 C -0.13 -3.43 4.95 30.67 0.15 -3.28 16 23 C -0.13 -2.97 2.02 -10.75 -0.02 -2.99 16 24 H 0.16 2.83 8.14 -2.39 -0.02 2.81 16 25 C 0.46 10.78 2.69 71.98 0.19 10.97 16 26 F -0.18 -3.99 16.77 44.97 0.75 -3.23 16 27 F -0.19 -4.50 16.78 44.97 0.75 -3.75 16 28 F -0.19 -4.92 14.40 44.97 0.65 -4.27 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.06 2.11 5.88 -2.38 -0.01 2.10 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 33 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.06 1.87 5.88 -2.38 -0.01 1.86 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.41 13.52 5.85 -92.70 -0.54 12.98 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 41 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 42 H 0.06 1.75 7.08 -2.39 -0.02 1.73 16 43 H 0.06 2.42 4.50 -2.39 -0.01 2.41 16 44 H 0.07 1.95 6.11 -2.39 -0.01 1.93 16 45 H 0.11 2.26 7.77 -2.39 -0.02 2.24 16 Total: -1.00 -68.15 354.42 5.71 -62.44 By element: Atomic # 1 Polarization: 27.10 SS G_CDS: 0.39 Total: 27.49 kcal Atomic # 6 Polarization: 17.99 SS G_CDS: 5.47 Total: 23.46 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -3.66 Total: -111.49 kcal Atomic # 8 Polarization: -35.43 SS G_CDS: -0.32 Total: -35.75 kcal Atomic # 9 Polarization: -13.41 SS G_CDS: 2.16 Total: -11.25 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.67 Total: 45.11 kcal Total: -68.15 5.71 -62.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931982964.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.930 kcal (2) G-P(sol) polarization free energy of solvation -68.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds