Wall clock time and date at job start Tue Mar 31 2020 21:14:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 C 1.53005 * 109.47200 * 239.99785 * 2 1 3 5 5 O 1.45202 * 109.47112 * 119.99849 * 2 1 3 6 6 C 1.34642 * 116.99876 * 59.99804 * 5 2 1 7 7 O 1.21506 * 120.00087 * 0.02562 * 6 5 2 8 8 N 1.34771 * 119.99813 * 179.97438 * 6 5 2 9 9 C 1.46500 * 120.00005 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.49791 * 325.06574 * 9 8 6 11 11 C 1.53195 * 109.49711 * 85.16337 * 9 8 6 12 12 N 1.46924 * 108.77659 * 65.32063 * 11 9 8 13 13 C 1.36940 * 120.62973 * 233.60910 * 12 11 9 14 14 H 1.08003 * 119.99817 * 152.78286 * 13 12 11 15 15 C 1.38814 * 119.99846 * 332.78919 * 13 12 11 16 16 N 1.31621 * 119.99920 * 159.75067 * 15 13 12 17 17 Si 1.86796 * 119.99925 * 339.75162 * 15 13 12 18 18 H 1.48500 * 109.47247 * 94.90079 * 17 15 13 19 19 H 1.48506 * 109.46744 * 214.89791 * 17 15 13 20 20 H 1.48494 * 109.47240 * 334.90003 * 17 15 13 21 21 C 1.46922 * 118.73956 * 53.60295 * 12 11 9 22 22 C 1.53193 * 108.77962 * 306.39609 * 21 12 11 23 23 C 1.53039 * 109.50093 * 205.00318 * 9 8 6 24 24 H 1.08999 * 109.45247 * 181.40016 * 23 9 8 25 25 C 1.52998 * 109.46257 * 61.43214 * 23 9 8 26 26 F 1.39897 * 109.46997 * 299.93665 * 25 23 9 27 27 F 1.39901 * 109.47044 * 59.93033 * 25 23 9 28 28 F 1.39892 * 109.47286 * 179.97438 * 25 23 9 29 29 H 1.09000 * 109.47293 * 299.99833 * 1 2 3 30 30 H 1.08994 * 109.47099 * 60.00174 * 1 2 3 31 31 H 1.08999 * 109.46713 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47004 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47024 * 299.99872 * 3 2 1 34 34 H 1.09000 * 109.46933 * 59.99946 * 3 2 1 35 35 H 1.09004 * 109.46942 * 300.00253 * 4 2 1 36 36 H 1.08994 * 109.46538 * 59.99964 * 4 2 1 37 37 H 1.08996 * 109.46868 * 179.97438 * 4 2 1 38 38 H 0.97002 * 120.00380 * 0.02562 * 8 6 5 39 39 H 1.09003 * 109.58614 * 185.10783 * 11 9 8 40 40 H 1.09004 * 109.58676 * 305.52891 * 11 9 8 41 41 H 0.96998 * 119.99887 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.58549 * 186.60811 * 21 12 11 43 43 H 1.09004 * 109.58244 * 66.18570 * 21 12 11 44 44 H 1.09003 * 109.49610 * 174.58279 * 22 21 12 45 45 H 1.09003 * 109.49334 * 294.65119 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5037 8 7 2.0680 -2.6656 2.4167 9 6 1.6748 -4.0671 2.5827 10 1 0.6661 -4.2103 2.1952 11 6 2.6502 -4.9660 1.8163 12 7 3.9785 -4.8581 2.4349 13 6 5.0752 -4.5359 1.6808 14 1 5.9178 -4.0386 2.1381 15 6 5.1039 -4.8484 0.3286 16 7 5.9328 -4.2168 -0.4754 17 14 3.9660 -6.1652 -0.3500 18 1 2.7350 -5.5288 -0.8836 19 1 4.6553 -6.9011 -1.4403 20 1 3.6032 -7.1127 0.7344 21 6 4.1077 -5.1023 3.8779 22 6 3.1160 -4.2018 4.6212 23 6 1.7082 -4.4346 4.0680 24 1 1.4396 -5.4841 4.1884 25 6 0.7099 -3.5621 4.8315 26 9 1.0547 -2.2151 4.6777 27 9 -0.5772 -3.7746 4.3259 28 9 0.7398 -3.8983 6.1891 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1391 37 1 3.1300 -0.7209 -1.2494 38 1 2.6276 -2.2368 3.0829 39 1 2.3082 -5.9999 1.8633 40 1 2.7040 -4.6438 0.7764 41 1 5.9531 -4.4354 -1.4202 42 1 5.1233 -4.8699 4.1983 43 1 3.8846 -6.1473 4.0930 44 1 3.1333 -4.4415 5.6844 45 1 3.3954 -3.1579 4.4789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931982965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:12 Heat of formation + Delta-G solvation = -207.816622 kcal Electronic energy + Delta-G solvation = -33267.402821 eV Core-core repulsion = 28485.050601 eV Total energy + Delta-G solvation = -4782.352220 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.04898 -47.53875 -47.49372 -40.44226 -38.80618 -36.49027 -34.27869 -33.74624 -32.77144 -31.23071 -29.79206 -27.25199 -27.10373 -26.96475 -24.08340 -23.51281 -22.24613 -21.64644 -19.96170 -19.35864 -18.38790 -18.18357 -17.93852 -17.42366 -16.86109 -16.06842 -15.73044 -15.33379 -14.97378 -14.69119 -14.38545 -14.24410 -14.15161 -13.92498 -13.88189 -13.68207 -13.64163 -13.57544 -13.25025 -13.22296 -13.10259 -12.49847 -12.33744 -12.24300 -11.98361 -11.95385 -11.70067 -11.63031 -11.52882 -11.21678 -11.08704 -10.97577 -10.81381 -10.41127 -10.29568 -10.05263 -10.02225 -9.63234 -9.54624 -8.88373 -8.57563 -7.10638 -6.00404 -3.38801 2.54981 2.81423 3.34454 3.35755 3.43765 3.47098 3.83309 4.02520 4.09546 4.47641 4.51823 4.75448 4.79809 4.89125 4.93486 4.97454 5.12536 5.18271 5.30105 5.52737 5.59584 5.67284 5.72837 5.77034 5.81043 5.81625 5.91812 5.95357 6.00737 6.10623 6.11865 6.17646 6.39518 6.44990 6.48421 6.57844 6.63920 6.79798 6.94720 7.83292 7.89137 8.25098 8.82491 8.86130 9.63994 9.96488 11.14649 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.008001 B = 0.007693 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3498.567167 B = 3638.729751 C = 6116.209203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.138 3.862 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.362 6.362 6 C 0.660 3.340 7 O -0.576 6.576 8 N -0.687 5.687 9 C 0.150 3.850 10 H 0.097 0.903 11 C 0.115 3.885 12 N -0.599 5.599 13 C -0.264 4.264 14 H 0.087 0.913 15 C 0.031 3.969 16 N -0.901 5.901 17 Si 0.873 3.127 18 H -0.283 1.283 19 H -0.302 1.302 20 H -0.269 1.269 21 C 0.151 3.849 22 C -0.137 4.137 23 C -0.134 4.134 24 H 0.127 0.873 25 C 0.451 3.549 26 F -0.179 7.179 27 F -0.185 7.185 28 F -0.186 7.186 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.063 0.937 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.407 0.593 39 H 0.042 0.958 40 H 0.090 0.910 41 H 0.263 0.737 42 H 0.075 0.925 43 H 0.031 0.969 44 H 0.076 0.924 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.373 5.399 8.014 14.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.101 3.899 3 C -0.196 4.196 4 C -0.241 4.241 5 O -0.277 6.277 6 C 0.413 3.587 7 O -0.466 6.466 8 N -0.347 5.347 9 C 0.044 3.956 10 H 0.115 0.885 11 C -0.012 4.012 12 N -0.322 5.322 13 C -0.392 4.392 14 H 0.105 0.895 15 C -0.169 4.169 16 N -0.543 5.543 17 Si 0.703 3.297 18 H -0.211 1.211 19 H -0.230 1.230 20 H -0.194 1.194 21 C 0.025 3.975 22 C -0.177 4.177 23 C -0.154 4.154 24 H 0.144 0.856 25 C 0.397 3.603 26 F -0.160 7.160 27 F -0.166 7.166 28 F -0.168 7.168 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.244 0.756 39 H 0.059 0.941 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.049 0.951 44 H 0.095 0.905 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.631 5.248 7.398 13.974 hybrid contribution -0.586 -0.387 -0.175 0.723 sum -11.217 4.861 7.223 14.199 Atomic orbital electron populations 1.22508 0.94490 1.04970 1.01880 1.21974 0.93851 0.91426 0.82676 1.21835 1.02540 0.92741 1.02516 1.22501 1.02340 1.03406 0.95813 1.86287 1.71576 1.23876 1.45943 1.17874 0.78529 0.80282 0.81973 1.90853 1.42223 1.70528 1.42958 1.44539 1.54972 1.11200 1.23958 1.21454 1.00832 0.81077 0.92237 0.88485 1.21866 0.85384 0.95841 0.98149 1.44330 1.02954 1.81262 1.03687 1.18819 0.96077 1.33057 0.91272 0.89530 1.25235 0.97032 0.98383 0.96279 1.69824 1.39578 1.40813 1.04118 0.87082 0.80286 0.83807 0.78530 1.21053 1.23043 1.19401 1.20915 0.97331 0.95209 0.84088 1.22206 0.92238 1.03080 1.00160 1.22799 0.95964 1.00974 0.95687 0.85550 1.20799 0.81516 0.80106 0.77868 1.93150 1.91852 1.35708 1.95296 1.93172 1.41694 1.94704 1.87049 1.93154 1.96526 1.92244 1.34847 0.92529 0.91545 0.89350 0.91287 0.90506 0.91801 0.89302 0.91757 0.91580 0.75604 0.94059 0.89221 0.92738 0.90680 0.95115 0.90542 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 8.37 37.16 0.31 -2.21 16 2 C 0.14 2.12 1.13 -90.62 -0.10 2.02 16 3 C -0.14 -1.67 8.85 37.16 0.33 -1.35 16 4 C -0.18 -3.04 8.37 37.16 0.31 -2.73 16 5 O -0.36 -6.61 9.94 -40.33 -0.40 -7.01 16 6 C 0.66 12.95 8.02 54.05 0.43 13.39 16 7 O -0.58 -12.20 11.54 -19.28 -0.22 -12.43 16 8 N -0.69 -12.34 3.64 -58.61 -0.21 -12.55 16 9 C 0.15 2.56 2.13 -67.81 -0.14 2.42 16 10 H 0.10 1.66 7.20 -51.93 -0.37 1.28 16 11 C 0.11 2.36 3.79 -3.71 -0.01 2.35 16 12 N -0.60 -12.83 2.69 -172.31 -0.46 -13.29 16 13 C -0.26 -6.93 10.04 -15.06 -0.15 -7.08 16 14 H 0.09 2.43 8.05 -52.48 -0.42 2.01 16 15 C 0.03 0.86 5.24 -17.43 -0.09 0.76 16 16 N -0.90 -27.04 13.97 55.49 0.78 -26.26 16 17 Si 0.87 22.00 24.35 -169.99 -4.14 17.86 16 18 H -0.28 -7.23 6.70 56.52 0.38 -6.85 16 19 H -0.30 -7.81 7.11 56.52 0.40 -7.41 16 20 H -0.27 -6.45 6.45 56.52 0.36 -6.09 16 21 C 0.15 2.50 6.52 -3.71 -0.02 2.48 16 22 C -0.14 -1.85 4.95 -26.61 -0.13 -1.98 16 23 C -0.13 -1.82 2.02 -90.58 -0.18 -2.00 16 24 H 0.13 1.48 8.14 -51.93 -0.42 1.05 16 25 C 0.45 6.04 2.69 37.16 0.10 6.14 16 26 F -0.18 -2.55 14.40 2.25 0.03 -2.52 16 27 F -0.18 -2.61 16.77 2.25 0.04 -2.58 16 28 F -0.19 -2.37 16.77 2.25 0.04 -2.33 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.09 1.45 5.88 -51.93 -0.31 1.14 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.09 1.74 5.88 -51.93 -0.31 1.44 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.41 6.93 5.86 -40.82 -0.24 6.69 16 39 H 0.04 0.82 6.98 -51.93 -0.36 0.45 16 40 H 0.09 2.19 4.50 -51.93 -0.23 1.96 16 41 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.07 1.25 7.93 -51.93 -0.41 0.83 16 43 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.85 7.77 -51.93 -0.40 0.45 16 45 H 0.07 1.06 6.11 -51.93 -0.32 0.74 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -30.74 354.21 -4.95 -35.69 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -6.37 Total: 7.89 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 0.64 Total: 12.19 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.10 Total: -52.11 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.62 Total: -19.44 kcal Atomic # 9 Polarization: -7.53 SS G_CDS: 0.11 Total: -7.43 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.74 -4.95 -35.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931982965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.130 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds