Wall clock time and date at job start Tue Mar 31 2020 21:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 C 1.53005 * 109.47200 * 239.99785 * 2 1 3 5 5 O 1.45202 * 109.47112 * 119.99849 * 2 1 3 6 6 C 1.34642 * 116.99876 * 59.99804 * 5 2 1 7 7 O 1.21506 * 120.00087 * 0.02562 * 6 5 2 8 8 N 1.34771 * 119.99813 * 179.97438 * 6 5 2 9 9 C 1.46500 * 120.00005 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.49791 * 325.06574 * 9 8 6 11 11 C 1.53195 * 109.49711 * 85.16337 * 9 8 6 12 12 N 1.46924 * 108.77659 * 65.32063 * 11 9 8 13 13 C 1.36940 * 120.62973 * 233.60910 * 12 11 9 14 14 H 1.08003 * 119.99817 * 152.78286 * 13 12 11 15 15 C 1.38814 * 119.99846 * 332.78919 * 13 12 11 16 16 N 1.31621 * 119.99920 * 159.75067 * 15 13 12 17 17 Si 1.86796 * 119.99925 * 339.75162 * 15 13 12 18 18 H 1.48500 * 109.47247 * 94.90079 * 17 15 13 19 19 H 1.48506 * 109.46744 * 214.89791 * 17 15 13 20 20 H 1.48494 * 109.47240 * 334.90003 * 17 15 13 21 21 C 1.46922 * 118.73956 * 53.60295 * 12 11 9 22 22 C 1.53193 * 108.77962 * 306.39609 * 21 12 11 23 23 C 1.53039 * 109.50093 * 205.00318 * 9 8 6 24 24 H 1.08999 * 109.45247 * 181.40016 * 23 9 8 25 25 C 1.52998 * 109.46257 * 61.43214 * 23 9 8 26 26 F 1.39897 * 109.46997 * 299.93665 * 25 23 9 27 27 F 1.39901 * 109.47044 * 59.93033 * 25 23 9 28 28 F 1.39892 * 109.47286 * 179.97438 * 25 23 9 29 29 H 1.09000 * 109.47293 * 299.99833 * 1 2 3 30 30 H 1.08994 * 109.47099 * 60.00174 * 1 2 3 31 31 H 1.08999 * 109.46713 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47004 * 180.02562 * 3 2 1 33 33 H 1.08994 * 109.47024 * 299.99872 * 3 2 1 34 34 H 1.09000 * 109.46933 * 59.99946 * 3 2 1 35 35 H 1.09004 * 109.46942 * 300.00253 * 4 2 1 36 36 H 1.08994 * 109.46538 * 59.99964 * 4 2 1 37 37 H 1.08996 * 109.46868 * 179.97438 * 4 2 1 38 38 H 0.97002 * 120.00380 * 0.02562 * 8 6 5 39 39 H 1.09003 * 109.58614 * 185.10783 * 11 9 8 40 40 H 1.09004 * 109.58676 * 305.52891 * 11 9 8 41 41 H 0.96998 * 119.99887 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.58549 * 186.60811 * 21 12 11 43 43 H 1.09004 * 109.58244 * 66.18570 * 21 12 11 44 44 H 1.09003 * 109.49610 * 174.58279 * 22 21 12 45 45 H 1.09003 * 109.49334 * 294.65119 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5037 8 7 2.0680 -2.6656 2.4167 9 6 1.6748 -4.0671 2.5827 10 1 0.6661 -4.2103 2.1952 11 6 2.6502 -4.9660 1.8163 12 7 3.9785 -4.8581 2.4349 13 6 5.0752 -4.5359 1.6808 14 1 5.9178 -4.0386 2.1381 15 6 5.1039 -4.8484 0.3286 16 7 5.9328 -4.2168 -0.4754 17 14 3.9660 -6.1652 -0.3500 18 1 2.7350 -5.5288 -0.8836 19 1 4.6553 -6.9011 -1.4403 20 1 3.6032 -7.1127 0.7344 21 6 4.1077 -5.1023 3.8779 22 6 3.1160 -4.2018 4.6212 23 6 1.7082 -4.4346 4.0680 24 1 1.4396 -5.4841 4.1884 25 6 0.7099 -3.5621 4.8315 26 9 1.0547 -2.2151 4.6777 27 9 -0.5772 -3.7746 4.3259 28 9 0.7398 -3.8983 6.1891 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1391 37 1 3.1300 -0.7209 -1.2494 38 1 2.6276 -2.2368 3.0829 39 1 2.3082 -5.9999 1.8633 40 1 2.7040 -4.6438 0.7764 41 1 5.9531 -4.4354 -1.4202 42 1 5.1233 -4.8699 4.1983 43 1 3.8846 -6.1473 4.0930 44 1 3.1333 -4.4415 5.6844 45 1 3.3954 -3.1579 4.4789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931982965.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:14:11 Heat of formation + Delta-G solvation = -227.852918 kcal Electronic energy + Delta-G solvation = -33268.271660 eV Core-core repulsion = 28485.050601 eV Total energy + Delta-G solvation = -4783.221059 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -51.11553 -48.59477 -48.56879 -41.87501 -40.20288 -37.92395 -35.93006 -35.13761 -34.21491 -33.06238 -31.20761 -28.51282 -28.36988 -28.28738 -25.65770 -24.96065 -23.53722 -23.18369 -21.24708 -20.82255 -19.62240 -19.29813 -19.20724 -18.87291 -18.44247 -17.46004 -17.19310 -17.03075 -16.45865 -16.00155 -15.67595 -15.51234 -15.35289 -15.29369 -15.08849 -14.99211 -14.84824 -14.73625 -14.67878 -14.53316 -14.45209 -14.23921 -13.70142 -13.47425 -13.30665 -13.15627 -13.07549 -12.89713 -12.84741 -12.61404 -12.50584 -12.40363 -12.29594 -12.04846 -11.86372 -11.67392 -11.47100 -11.35859 -11.08789 -10.80362 -10.20911 -8.94466 -8.16355 -5.47309 1.19604 1.31678 1.35945 1.43686 1.72377 1.85039 2.40990 2.73477 2.86355 3.00014 3.02955 3.20721 3.34136 3.63491 3.73343 3.76668 3.80867 3.95412 4.06304 4.10652 4.37329 4.42550 4.53743 4.59279 4.60857 4.67634 4.74062 4.75650 4.79681 4.84091 4.85788 4.87528 5.07429 5.08547 5.26015 5.29396 5.32476 5.39887 5.61276 5.86402 6.13158 6.41597 6.89359 7.38594 7.61358 7.99337 9.02532 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.008001 B = 0.007693 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3498.567167 B = 3638.729751 C = 6116.209203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.124 3.876 3 C -0.133 4.133 4 C -0.179 4.179 5 O -0.372 6.372 6 C 0.650 3.350 7 O -0.597 6.597 8 N -0.684 5.684 9 C 0.154 3.846 10 H 0.098 0.902 11 C 0.112 3.888 12 N -0.610 5.610 13 C -0.233 4.233 14 H 0.060 0.940 15 C -0.030 4.030 16 N -0.952 5.952 17 Si 0.929 3.071 18 H -0.297 1.297 19 H -0.316 1.316 20 H -0.243 1.243 21 C 0.146 3.854 22 C -0.127 4.127 23 C -0.126 4.126 24 H 0.157 0.843 25 C 0.459 3.541 26 F -0.185 7.185 27 F -0.188 7.188 28 F -0.177 7.177 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.053 0.947 36 H 0.096 0.904 37 H 0.042 0.958 38 H 0.410 0.590 39 H 0.059 0.941 40 H 0.048 0.952 41 H 0.256 0.744 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.113 0.887 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.211 5.435 10.275 16.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.087 3.913 3 C -0.190 4.190 4 C -0.236 4.236 5 O -0.287 6.287 6 C 0.404 3.596 7 O -0.488 6.488 8 N -0.344 5.344 9 C 0.048 3.952 10 H 0.116 0.884 11 C -0.014 4.014 12 N -0.334 5.334 13 C -0.363 4.363 14 H 0.078 0.922 15 C -0.225 4.225 16 N -0.599 5.599 17 Si 0.760 3.240 18 H -0.225 1.225 19 H -0.245 1.245 20 H -0.166 1.166 21 C 0.022 3.978 22 C -0.166 4.166 23 C -0.146 4.146 24 H 0.175 0.825 25 C 0.405 3.595 26 F -0.167 7.167 27 F -0.170 7.170 28 F -0.158 7.158 29 H 0.086 0.914 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.061 0.939 38 H 0.248 0.752 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.074 0.926 44 H 0.132 0.868 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.498 5.268 9.735 16.695 hybrid contribution -0.017 -0.326 -0.807 0.870 sum -12.516 4.942 8.929 16.149 Atomic orbital electron populations 1.22424 0.93081 1.03686 1.03821 1.22422 0.95137 0.92672 0.81020 1.21866 1.01981 0.90450 1.04662 1.22448 1.00745 1.02054 0.98363 1.86297 1.71794 1.23305 1.47278 1.18169 0.78515 0.80795 0.82112 1.90842 1.43203 1.71075 1.43694 1.44639 1.54706 1.11535 1.23543 1.21364 0.99556 0.79794 0.94502 0.88426 1.21794 0.85829 0.97342 0.96464 1.44408 1.01965 1.81622 1.05448 1.18772 0.96286 1.30060 0.91173 0.92224 1.25787 0.98953 1.00690 0.97093 1.69954 1.42695 1.43142 1.04071 0.86174 0.77890 0.81876 0.78096 1.22502 1.24530 1.16606 1.21155 0.98439 0.97284 0.80967 1.22100 0.90964 1.01821 1.01729 1.22780 0.96294 1.02697 0.92829 0.82499 1.20589 0.81155 0.79632 0.78133 1.93147 1.91874 1.36302 1.95358 1.93174 1.41962 1.94683 1.87175 1.93179 1.96464 1.92119 1.34042 0.91404 0.88726 0.92167 0.92221 0.87483 0.90488 0.92840 0.88501 0.93869 0.75164 0.92348 0.93418 0.93479 0.90969 0.92577 0.86825 0.91552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.60 8.37 71.98 0.60 -3.99 16 2 C 0.12 3.75 1.13 -10.79 -0.01 3.74 16 3 C -0.13 -2.94 8.85 71.98 0.64 -2.31 16 4 C -0.18 -6.07 8.37 71.98 0.60 -5.47 16 5 O -0.37 -13.73 9.94 -55.51 -0.55 -14.28 16 6 C 0.65 25.94 8.02 129.79 1.04 26.98 16 7 O -0.60 -26.04 11.54 19.82 0.23 -25.81 16 8 N -0.68 -24.31 3.64 -569.76 -2.08 -26.38 16 9 C 0.15 5.00 2.13 45.07 0.10 5.09 16 10 H 0.10 3.20 7.20 -2.39 -0.02 3.19 16 11 C 0.11 4.50 3.79 86.36 0.33 4.83 16 12 N -0.61 -25.41 2.69 -699.08 -1.88 -27.29 16 13 C -0.23 -12.40 10.04 84.03 0.84 -11.56 16 14 H 0.06 3.45 8.05 -2.91 -0.02 3.43 16 15 C -0.03 -1.75 5.24 84.86 0.44 -1.31 16 16 N -0.95 -59.84 13.97 21.65 0.30 -59.54 16 17 Si 0.93 46.86 24.35 68.60 1.67 48.53 16 18 H -0.30 -15.44 6.70 99.48 0.67 -14.78 16 19 H -0.32 -16.42 7.11 99.48 0.71 -15.71 16 20 H -0.24 -10.98 6.45 99.48 0.64 -10.34 16 21 C 0.15 4.40 6.52 86.36 0.56 4.96 16 22 C -0.13 -2.95 4.95 30.67 0.15 -2.80 16 23 C -0.13 -2.97 2.02 -10.77 -0.02 -3.00 16 24 H 0.16 2.84 8.14 -2.39 -0.02 2.82 16 25 C 0.46 10.76 2.69 71.98 0.19 10.96 16 26 F -0.19 -4.85 14.40 44.97 0.65 -4.21 16 27 F -0.19 -4.80 16.77 44.97 0.75 -4.05 16 28 F -0.18 -3.75 16.77 44.97 0.75 -3.00 16 29 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 1.97 5.88 -2.39 -0.01 1.95 16 32 H 0.06 1.43 8.14 -2.39 -0.02 1.42 16 33 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.05 2.20 5.88 -2.39 -0.01 2.19 16 36 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.41 13.70 5.86 -92.71 -0.54 13.16 16 39 H 0.06 2.15 6.98 -2.39 -0.02 2.13 16 40 H 0.05 2.35 4.50 -2.38 -0.01 2.34 16 41 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 42 H 0.07 2.23 7.93 -2.39 -0.02 2.21 16 43 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.11 1.91 7.77 -2.39 -0.02 1.89 16 45 H 0.07 1.70 6.11 -2.39 -0.01 1.68 16 Total: -1.00 -70.83 354.21 5.70 -65.13 By element: Atomic # 1 Polarization: 24.39 SS G_CDS: 0.38 Total: 24.77 kcal Atomic # 6 Polarization: 20.66 SS G_CDS: 5.47 Total: 26.13 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -3.66 Total: -113.21 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -0.32 Total: -40.09 kcal Atomic # 9 Polarization: -13.41 SS G_CDS: 2.16 Total: -11.25 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 1.67 Total: 48.53 kcal Total: -70.83 5.70 -65.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931982965.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.722 kcal (2) G-P(sol) polarization free energy of solvation -70.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -233.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds