Wall clock time and date at job start Tue Mar 31 2020 20:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47387 * 2 1 4 4 C 1.53002 * 109.46954 * 119.99879 * 2 1 3 5 5 N 1.46506 * 109.47035 * 184.99888 * 4 2 1 6 6 C 1.34777 * 119.99873 * 179.97438 * 5 4 2 7 7 O 1.21592 * 119.99797 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99902 * 180.02562 * 6 5 4 9 9 C 1.46507 * 119.99769 * 180.02562 * 8 6 5 10 10 H 1.09000 * 109.47266 * 34.99425 * 9 8 6 11 11 C 1.50697 * 109.47070 * 154.99908 * 9 8 6 12 12 H 1.08000 * 120.00291 * 359.97438 * 11 9 8 13 13 C 1.37880 * 119.99820 * 179.97438 * 11 9 8 14 14 N 1.31509 * 120.00113 * 0.02562 * 13 11 9 15 15 Si 1.86796 * 119.99766 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47576 * 90.00074 * 15 13 11 17 17 H 1.48507 * 109.47019 * 210.00361 * 15 13 11 18 18 H 1.48507 * 109.47364 * 330.00141 * 15 13 11 19 19 C 1.52998 * 109.46602 * 274.99517 * 9 8 6 20 20 F 1.39908 * 109.47321 * 60.00170 * 19 9 8 21 21 F 1.39898 * 109.47232 * 180.02562 * 19 9 8 22 22 F 1.39897 * 109.47403 * 300.00466 * 19 9 8 23 23 O 1.42903 * 109.47463 * 240.00149 * 2 1 3 24 24 C 1.42894 * 114.00108 * 59.99802 * 23 2 1 25 25 C 1.53004 * 109.47393 * 180.02562 * 24 23 2 26 26 C 1.52994 * 117.49947 * 243.62322 * 25 24 23 27 27 C 1.52995 * 117.49693 * 175.00035 * 25 24 23 28 28 H 1.08995 * 109.47393 * 300.00294 * 1 2 3 29 29 H 1.09001 * 109.47013 * 59.99761 * 1 2 3 30 30 H 1.08996 * 109.46904 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47226 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47239 * 300.00100 * 3 2 1 33 33 H 1.09008 * 109.46996 * 59.99811 * 3 2 1 34 34 H 1.09004 * 109.46930 * 65.00118 * 4 2 1 35 35 H 1.09000 * 109.47312 * 305.00062 * 4 2 1 36 36 H 0.96999 * 120.00080 * 0.02562 * 5 4 2 37 37 H 0.96999 * 120.00050 * 359.97438 * 8 6 5 38 38 H 0.96994 * 120.00077 * 179.97438 * 14 13 11 39 39 H 1.08998 * 109.47256 * 300.00496 * 24 23 2 40 40 H 1.09009 * 109.46884 * 60.00274 * 24 23 2 41 41 H 1.09000 * 115.54164 * 29.33344 * 25 24 23 42 42 H 1.09005 * 117.49983 * 0.02562 * 26 25 24 43 43 H 1.09000 * 117.49528 * 145.02034 * 26 25 24 44 44 H 1.09005 * 117.49735 * 214.97819 * 27 25 24 45 45 H 1.09002 * 117.50294 * 0.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5001 -0.6179 1.3110 6 6 4.1730 -1.1826 2.3331 7 8 3.5683 -1.7782 3.2038 8 7 5.5161 -1.0871 2.3902 9 6 6.2476 -1.7015 3.5010 10 1 5.7516 -2.6263 3.7954 11 6 7.6586 -2.0043 3.0669 12 1 7.9784 -1.7636 2.0638 13 6 8.5413 -2.5886 3.9503 14 7 8.1517 -2.8821 5.1716 15 14 10.2904 -2.9632 3.4124 16 1 11.1591 -1.7946 3.7038 17 1 10.7922 -4.1495 4.1515 18 1 10.3107 -3.2436 1.9542 19 6 6.2752 -0.7372 4.6886 20 9 4.9653 -0.4560 5.0916 21 9 6.9742 -1.3235 5.7491 22 9 6.9118 0.4499 4.3108 23 8 2.0064 -0.6736 -1.1668 24 6 1.5848 -0.0773 -2.3950 25 6 2.1497 -0.8772 -3.5707 26 6 3.1361 -0.1666 -4.4996 27 6 1.7143 -0.4664 -4.9787 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.7516 -1.7715 1.2056 35 1 1.6053 -0.2617 2.1370 36 1 3.9824 -0.1424 0.6166 37 1 5.9985 -0.6123 1.6954 38 1 8.7726 -3.2935 5.7930 39 1 0.4960 -0.0789 -2.4448 40 1 1.9493 0.9488 -2.4447 41 1 2.3100 -1.9389 -3.3830 42 1 3.3829 0.8707 -4.2730 43 1 3.9457 -0.7608 -4.9232 44 1 1.5887 -1.2579 -5.7176 45 1 1.0258 0.3739 -5.0676 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932897521.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:27 Heat of formation + Delta-G solvation = -190.281403 kcal Electronic energy + Delta-G solvation = -30905.034500 eV Core-core repulsion = 26123.442664 eV Total energy + Delta-G solvation = -4781.591836 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.160 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.26492 -45.91696 -45.53579 -39.88100 -38.88114 -37.32554 -34.92004 -34.18100 -32.62199 -32.01645 -28.48844 -27.76828 -27.53118 -25.54109 -24.46641 -22.69301 -21.59176 -20.91241 -20.26878 -20.07869 -18.28720 -17.05477 -16.76875 -16.74640 -16.51440 -16.35163 -15.90373 -15.49495 -15.07983 -14.71353 -14.71168 -14.45162 -14.02045 -13.81063 -13.46963 -13.09070 -13.06180 -12.82784 -12.48264 -12.40520 -12.32042 -12.29928 -12.21309 -12.15342 -11.90399 -11.88272 -11.74458 -11.68631 -11.47270 -11.11133 -10.85880 -10.81612 -10.72345 -10.67766 -10.44487 -10.34612 -9.63968 -9.59281 -9.45256 -8.71028 -8.64902 -8.07103 -6.18612 -4.42023 3.18407 3.21925 3.24991 3.28956 3.34096 3.59183 3.89060 4.23334 4.41073 4.54858 4.57316 4.63354 4.68252 4.70891 4.76198 4.94943 4.98762 5.02505 5.15127 5.25012 5.30148 5.35665 5.40513 5.51099 5.58325 5.61710 5.73146 5.78686 5.80473 5.88973 5.92020 5.96228 5.96725 6.04632 6.29901 6.86488 6.92886 7.07736 7.29959 7.44989 7.68058 7.77308 8.55333 8.75334 9.21372 9.34049 10.73032 Molecular weight = 338.16amu Principal moments of inertia in cm(-1) A = 0.014206 B = 0.002983 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.550043 B = 9385.542123 C =10722.827335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.102 3.898 3 C -0.179 4.179 4 C 0.159 3.841 5 N -0.747 5.747 6 C 0.699 3.301 7 O -0.587 6.587 8 N -0.727 5.727 9 C 0.263 3.737 10 H 0.085 0.915 11 C -0.551 4.551 12 H 0.077 0.923 13 C 0.064 3.936 14 N -0.840 5.840 15 Si 0.915 3.085 16 H -0.277 1.277 17 H -0.283 1.283 18 H -0.270 1.270 19 C 0.416 3.584 20 F -0.217 7.217 21 F -0.138 7.138 22 F -0.211 7.211 23 O -0.367 6.367 24 C 0.088 3.912 25 C -0.151 4.151 26 C -0.177 4.177 27 C -0.176 4.176 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.394 0.606 37 H 0.394 0.606 38 H 0.268 0.732 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.114 0.886 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.478 7.810 -15.742 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.062 3.938 3 C -0.237 4.237 4 C 0.034 3.966 5 N -0.405 5.405 6 C 0.398 3.602 7 O -0.464 6.464 8 N -0.379 5.379 9 C 0.157 3.843 10 H 0.102 0.898 11 C -0.588 4.588 12 H 0.095 0.905 13 C -0.144 4.144 14 N -0.473 5.473 15 Si 0.741 3.259 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.195 1.195 19 C 0.359 3.641 20 F -0.199 7.199 21 F -0.119 7.119 22 F -0.193 7.193 23 O -0.286 6.286 24 C 0.011 3.989 25 C -0.169 4.169 26 C -0.214 4.214 27 C -0.213 4.213 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.229 0.771 37 H 0.227 0.773 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.132 0.868 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.861 6.995 -14.669 20.725 hybrid contribution 1.198 0.757 -0.665 1.565 sum -11.664 7.752 -15.333 20.767 Atomic orbital electron populations 1.22352 0.94754 1.03403 1.02884 1.21759 0.93671 0.92209 0.86119 1.22431 1.02542 0.95944 1.02745 1.21053 0.80123 1.00990 0.94447 1.45006 1.06788 1.61213 1.27488 1.16060 0.82297 0.79808 0.81990 1.90911 1.67838 1.47605 1.40071 1.45240 1.04297 1.59701 1.28685 1.19577 0.94218 0.90453 0.80097 0.89754 1.20891 0.93676 1.43978 1.00250 0.90519 1.25077 0.99947 0.94911 0.94481 1.70406 1.35831 1.36805 1.04290 0.86221 0.82752 0.78048 0.78837 1.20271 1.20828 1.19508 1.23195 0.71823 0.80829 0.88229 1.93071 1.39718 1.94622 1.92451 1.93398 1.77560 1.81993 1.58950 1.92977 1.82933 1.51527 1.91847 1.88043 1.74361 1.53630 1.12578 1.22032 0.97952 0.95528 0.83368 1.22142 1.04066 1.00864 0.89872 1.23063 0.93079 1.01564 1.03654 1.22964 0.98271 1.03567 0.96545 0.90958 0.91870 0.91195 0.91397 0.92141 0.90958 0.91013 0.90381 0.77115 0.77325 0.92176 0.92776 0.92972 0.86819 0.88712 0.88562 0.88484 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.42 8.25 37.16 0.31 -1.11 16 2 C 0.10 1.03 0.80 -90.62 -0.07 0.96 16 3 C -0.18 -1.58 8.02 37.16 0.30 -1.28 16 4 C 0.16 2.14 4.84 -4.04 -0.02 2.12 16 5 N -0.75 -11.61 5.19 -65.22 -0.34 -11.94 16 6 C 0.70 14.50 8.10 -86.92 -0.70 13.79 16 7 O -0.59 -14.51 14.91 5.28 0.08 -14.43 16 8 N -0.73 -15.41 4.99 -59.81 -0.30 -15.71 16 9 C 0.26 6.71 2.21 -69.08 -0.15 6.56 16 10 H 0.08 2.42 7.58 -51.93 -0.39 2.03 16 11 C -0.55 -14.31 8.46 -34.44 -0.29 -14.60 16 12 H 0.08 1.88 7.74 -52.49 -0.41 1.48 16 13 C 0.06 1.70 5.20 -17.82 -0.09 1.61 16 14 N -0.84 -23.37 9.50 55.43 0.53 -22.85 16 15 Si 0.91 20.35 29.54 -169.99 -5.02 15.33 16 16 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 19 C 0.42 10.92 2.81 37.16 0.10 11.03 16 20 F -0.22 -5.68 15.67 2.25 0.04 -5.64 16 21 F -0.14 -3.89 12.91 2.25 0.03 -3.86 16 22 F -0.21 -5.31 16.94 2.25 0.04 -5.27 16 23 O -0.37 -4.10 9.93 -35.23 -0.35 -4.45 16 24 C 0.09 0.76 5.42 37.16 0.20 0.96 16 25 C -0.15 -1.30 6.06 -90.62 -0.55 -1.84 16 26 C -0.18 -1.34 10.18 -26.74 -0.27 -1.61 16 27 C -0.18 -1.19 10.25 -26.73 -0.27 -1.46 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.43 6.54 -51.93 -0.34 0.09 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.64 6.57 -51.93 -0.34 0.30 16 32 H 0.06 0.44 6.54 -51.93 -0.34 0.10 16 33 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.39 5.24 7.00 -40.82 -0.29 4.95 16 37 H 0.39 7.22 8.55 -40.82 -0.35 6.87 16 38 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 39 H 0.05 0.41 6.42 -51.93 -0.33 0.08 16 40 H 0.05 0.41 6.15 -51.92 -0.32 0.09 16 41 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 42 H 0.09 0.67 8.03 -51.93 -0.42 0.25 16 43 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 374.24 15.07 5.64 5.64 Total: -1.00 -31.55 374.24 -7.64 -39.20 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -6.46 Total: 8.88 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: -1.52 Total: 15.10 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.11 Total: -50.50 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.27 Total: -18.87 kcal Atomic # 9 Polarization: -14.88 SS G_CDS: 0.10 Total: -14.77 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.55 -7.64 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932897521.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.085 kcal (2) G-P(sol) polarization free energy of solvation -31.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds