Wall clock time and date at job start Tue Mar 31 2020 21:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47215 * 2 1 4 4 H 1.08996 * 109.49857 * 305.05855 * 3 2 1 5 5 C 1.53192 * 109.52686 * 65.14322 * 3 2 1 6 6 N 1.46923 * 108.77748 * 174.60365 * 5 3 2 7 7 C 1.34773 * 120.63405 * 126.43465 * 6 5 3 8 8 O 1.21566 * 119.99800 * 354.15058 * 7 6 5 9 9 C 1.47728 * 120.00446 * 174.15484 * 7 6 5 10 10 C 1.39647 * 120.10834 * 318.50161 * 9 7 6 11 11 C 1.37846 * 119.92765 * 180.02562 * 10 9 7 12 12 C 1.38603 * 120.14824 * 0.02562 * 11 10 9 13 13 F 1.35107 * 119.89117 * 179.97438 * 12 11 10 14 14 C 1.38831 * 120.22212 * 359.97409 * 12 11 10 15 15 F 1.35094 * 119.96948 * 180.02562 * 14 12 11 16 16 C 1.38063 * 120.07014 * 359.72729 * 14 12 11 17 17 C 1.46942 * 118.76417 * 306.41182 * 6 5 3 18 18 C 1.53185 * 108.77194 * 53.55453 * 17 6 5 19 19 C 1.53040 * 109.34176 * 305.41860 * 18 17 6 20 20 H 1.09006 * 109.45441 * 301.33991 * 19 18 17 21 21 N 1.46501 * 109.46216 * 181.37181 * 19 18 17 22 22 C 1.36932 * 120.00355 * 84.99872 * 21 19 18 23 23 H 1.07999 * 119.99933 * 359.97438 * 22 21 19 24 24 C 1.38812 * 120.00351 * 180.02562 * 22 21 19 25 25 N 1.31624 * 119.99533 * 359.97438 * 24 22 21 26 26 Si 1.86794 * 120.00201 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47162 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47337 * 119.99412 * 26 24 22 29 29 H 1.48508 * 109.46917 * 239.99656 * 26 24 22 30 30 H 1.08998 * 109.46944 * 300.00837 * 1 2 3 31 31 H 1.09004 * 109.46707 * 60.00295 * 1 2 3 32 32 H 1.08991 * 109.46829 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47574 * 239.99421 * 2 1 3 34 34 H 1.09004 * 109.46707 * 119.99705 * 2 1 3 35 35 H 1.08994 * 109.58600 * 294.39182 * 5 3 2 36 36 H 1.09001 * 109.58693 * 54.81734 * 5 3 2 37 37 H 1.08000 * 120.03937 * 0.02562 * 10 9 7 38 38 H 1.08004 * 119.92597 * 179.97438 * 11 10 9 39 39 H 1.08002 * 120.07842 * 180.27749 * 16 14 12 40 40 H 1.08991 * 109.55848 * 293.78382 * 17 6 5 41 41 H 1.09003 * 109.61144 * 173.35486 * 17 6 5 42 42 H 1.08998 * 109.49904 * 185.44567 * 18 17 6 43 43 H 1.09010 * 109.49834 * 65.38306 * 18 17 6 44 44 H 0.96998 * 119.99562 * 264.99356 * 21 19 18 45 45 H 0.96997 * 119.99309 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6049 1.9822 -0.8410 5 6 1.6385 2.1275 1.3101 6 7 2.2450 3.4651 1.3495 7 6 1.4858 4.5573 1.5667 8 8 0.2760 4.4544 1.6262 9 6 2.1237 5.8794 1.7323 10 6 3.2897 6.0046 2.4904 11 6 3.8815 7.2402 2.6429 12 6 3.3216 8.3587 2.0459 13 9 3.9057 9.5673 2.1992 14 6 2.1625 8.2413 1.2908 15 9 1.6214 9.3348 0.7107 16 6 1.5656 7.0072 1.1270 17 6 3.6952 3.5902 1.1482 18 6 4.0737 2.8881 -0.1596 19 6 3.5653 1.4450 -0.1257 20 1 4.0007 0.9266 0.7286 21 7 3.9544 0.7612 -1.3616 22 6 5.1919 0.1842 -1.4644 23 1 5.8813 0.2335 -0.6346 24 6 5.5607 -0.4632 -2.6356 25 7 4.7206 -0.5228 -3.6471 26 14 7.2492 -1.2497 -2.7761 27 1 7.9980 -1.0440 -1.5104 28 1 7.0979 -2.7048 -3.0313 29 1 7.9943 -0.6251 -3.8987 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 0.5533 2.2168 1.3580 36 1 1.9965 1.5390 2.1548 37 1 3.7274 5.1343 2.9568 38 1 4.7831 7.3370 3.2297 39 1 0.6664 6.9150 0.5359 40 1 4.2208 3.1214 1.9800 41 1 3.9668 4.6442 1.0890 42 1 5.1578 2.8893 -0.2726 43 1 3.6198 3.4141 -0.9996 44 1 3.3352 0.7172 -2.1070 45 1 4.9783 -0.9755 -4.4654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037858050.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:07 Heat of formation + Delta-G solvation = -88.437732 kcal Electronic energy + Delta-G solvation = -29581.174236 eV Core-core repulsion = 25234.767898 eV Total energy + Delta-G solvation = -4346.406338 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.83225 -48.90117 -40.78695 -38.81180 -37.67477 -34.91502 -33.85378 -31.82947 -31.51128 -31.13987 -29.59092 -28.59860 -25.62546 -24.15712 -23.85949 -23.46210 -22.58145 -20.91763 -20.31914 -19.48056 -18.18484 -17.99350 -17.50488 -17.15998 -16.70714 -16.31657 -16.04468 -15.31769 -15.27585 -14.98016 -14.85818 -14.52389 -14.36077 -14.06984 -13.84014 -13.58158 -13.36866 -13.30614 -13.08059 -12.92026 -12.84545 -12.46855 -12.15127 -11.88455 -11.79011 -11.57257 -11.35537 -10.99391 -10.90167 -10.77226 -10.43921 -10.24857 -10.18141 -10.04656 -9.77928 -9.66575 -9.56053 -9.12793 -8.94282 -8.61667 -7.01883 -5.82724 -3.11704 0.20295 0.54461 2.35955 2.75182 3.13282 3.34463 3.38394 3.43974 3.46558 3.92293 4.08745 4.15129 4.45079 4.52848 4.62210 4.91249 5.07008 5.14588 5.22878 5.25925 5.32815 5.36532 5.40722 5.45414 5.47719 5.55158 5.60233 5.62181 5.68255 5.81890 5.93316 6.05233 6.09039 6.22113 6.24668 6.29364 6.32496 6.39973 6.47794 6.60706 6.75987 6.89888 6.98654 7.30460 7.63932 7.98070 8.35299 9.47035 10.03963 10.38605 11.39666 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.002992 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.468696 B = 9356.889086 C =10763.807992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.105 4.105 4 H 0.071 0.929 5 C 0.119 3.881 6 N -0.596 5.596 7 C 0.559 3.441 8 O -0.535 6.535 9 C -0.104 4.104 10 C -0.069 4.069 11 C -0.130 4.130 12 C 0.086 3.914 13 F -0.125 7.125 14 C 0.064 3.936 15 F -0.125 7.125 16 C -0.074 4.074 17 C 0.096 3.904 18 C -0.152 4.152 19 C 0.183 3.817 20 H 0.048 0.952 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.930 5.930 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.155 0.845 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.060 0.940 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.364 13.426 14.052 19.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.003 4.003 6 N -0.327 5.327 7 C 0.347 3.653 8 O -0.413 6.413 9 C -0.107 4.107 10 C -0.087 4.087 11 C -0.149 4.149 12 C 0.066 3.934 13 F -0.103 7.103 14 C 0.044 3.956 15 F -0.103 7.103 16 C -0.094 4.094 17 C -0.027 4.027 18 C -0.194 4.194 19 C 0.073 3.927 20 H 0.066 0.934 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.173 0.827 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.820 13.345 14.074 19.985 hybrid contribution 0.939 0.071 -0.620 1.127 sum -3.881 13.417 13.454 19.393 Atomic orbital electron populations 1.21847 0.96771 1.01088 1.01325 1.21449 0.94399 0.95582 1.03538 1.21789 0.97711 0.96358 0.96639 0.91095 1.21833 0.99566 0.80786 0.98136 1.48082 1.08786 1.06617 1.69252 1.18043 0.86522 0.83548 0.77234 1.90801 1.13421 1.85807 1.51295 1.19836 0.96402 0.93996 1.00480 1.21392 0.93046 0.97781 0.96519 1.21041 1.01981 0.90531 1.01352 1.17907 0.92946 0.82066 1.00516 1.91556 1.83058 1.41804 1.93919 1.17472 0.94347 0.84425 0.99378 1.91557 1.85013 1.51527 1.82216 1.21094 1.00266 0.89017 0.99028 1.22235 0.79151 1.01684 0.99632 1.22706 1.02366 0.99298 0.94981 1.20191 0.90741 0.90478 0.91311 0.93353 1.42413 1.16541 1.64358 1.12706 1.19244 0.91794 1.27373 0.98625 0.91172 1.24730 0.98121 1.01495 0.96426 1.69669 1.35167 1.48281 1.04749 0.86167 0.83998 0.78921 0.77365 1.20587 1.21905 1.21935 0.93225 0.92955 0.93137 0.89726 0.92420 0.88904 0.91250 0.83134 0.82827 0.82712 0.91032 0.89829 0.90377 0.92098 0.78176 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.68 37.16 0.36 -1.65 16 2 C -0.11 -1.70 5.31 -26.73 -0.14 -1.84 16 3 C -0.10 -1.60 1.92 -90.50 -0.17 -1.77 16 4 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 5 C 0.12 1.56 5.34 -3.71 -0.02 1.54 16 6 N -0.60 -7.44 2.97 -173.92 -0.52 -7.96 16 7 C 0.56 7.36 7.30 -12.38 -0.09 7.27 16 8 O -0.54 -8.71 16.36 5.31 0.09 -8.62 16 9 C -0.10 -1.10 5.08 -104.97 -0.53 -1.63 16 10 C -0.07 -0.55 7.39 -39.20 -0.29 -0.84 16 11 C -0.13 -0.96 10.01 -39.59 -0.40 -1.36 16 12 C 0.09 0.82 7.31 -39.23 -0.29 0.53 16 13 F -0.12 -1.29 17.18 2.25 0.04 -1.25 16 14 C 0.06 0.67 7.30 -39.43 -0.29 0.38 16 15 F -0.12 -1.43 17.17 2.25 0.04 -1.39 16 16 C -0.07 -0.79 9.63 -39.12 -0.38 -1.16 16 17 C 0.10 1.08 4.92 -3.71 -0.02 1.06 16 18 C -0.15 -2.33 5.66 -26.62 -0.15 -2.48 16 19 C 0.18 3.20 2.19 -67.89 -0.15 3.05 16 20 H 0.05 0.86 8.08 -51.93 -0.42 0.44 16 21 N -0.72 -16.44 4.33 -53.38 -0.23 -16.67 16 22 C -0.24 -6.16 9.93 -15.06 -0.15 -6.31 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -26.98 13.06 55.49 0.72 -26.25 16 26 Si 0.90 21.47 29.55 -169.99 -5.02 16.45 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 29 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 30 H 0.05 0.59 6.70 -51.93 -0.35 0.25 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.57 7.21 -51.93 -0.37 1.19 16 34 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.09 1.28 5.72 -51.93 -0.30 0.98 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.15 0.93 6.71 -52.49 -0.35 0.57 16 38 H 0.15 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.16 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.07 0.69 8.13 -51.93 -0.42 0.26 16 41 H 0.08 0.80 4.81 -51.93 -0.25 0.55 16 42 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.06 1.02 8.14 -51.92 -0.42 0.59 16 44 H 0.38 9.58 7.51 -40.82 -0.31 9.28 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 370.53 15.07 5.58 5.58 Total: -1.00 -30.09 370.53 -8.22 -38.31 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.12 Total: 7.42 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.80 Total: -5.62 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.02 Total: -50.88 kcal Atomic # 8 Polarization: -8.71 SS G_CDS: 0.09 Total: -8.62 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.08 Total: -2.64 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.09 -8.22 -38.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037858050.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.131 kcal (2) G-P(sol) polarization free energy of solvation -30.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds