Wall clock time and date at job start Tue Mar 31 2020 21:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46635 * 2 1 4 4 H 1.08993 * 109.50244 * 305.06574 * 3 2 1 5 5 C 1.53626 * 109.43308 * 65.29443 * 3 2 1 6 6 N 1.46920 * 108.54611 * 174.72247 * 5 3 2 7 7 C 1.34777 * 120.63326 * 126.36441 * 6 5 3 8 8 O 1.21565 * 119.99691 * 3.50864 * 7 6 5 9 9 C 1.47728 * 120.00209 * 183.50921 * 7 6 5 10 10 C 1.39650 * 120.11017 * 309.20863 * 9 7 6 11 11 C 1.37854 * 119.92503 * 180.02562 * 10 9 7 12 12 C 1.38604 * 120.14502 * 0.02562 * 11 10 9 13 13 F 1.35102 * 119.88584 * 179.97438 * 12 11 10 14 14 C 1.38833 * 120.22266 * 359.97438 * 12 11 10 15 15 F 1.35103 * 119.96410 * 180.02562 * 14 12 11 16 16 C 1.38057 * 120.07240 * 359.97438 * 14 12 11 17 17 C 1.46929 * 118.73581 * 306.09184 * 6 5 3 18 18 C 1.53188 * 108.77663 * 53.86114 * 17 6 5 19 19 C 1.53038 * 109.31381 * 305.36368 * 18 17 6 20 20 H 1.09000 * 109.46478 * 181.37386 * 19 18 17 21 21 N 1.46506 * 109.45698 * 301.34683 * 19 18 17 22 22 C 1.36936 * 119.99856 * 274.99541 * 21 19 18 23 23 H 1.08003 * 119.99964 * 0.02562 * 22 21 19 24 24 C 1.38809 * 119.99817 * 180.02562 * 22 21 19 25 25 N 1.31614 * 120.00350 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99937 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47427 * 89.99861 * 26 24 22 28 28 H 1.48503 * 109.47090 * 209.99987 * 26 24 22 29 29 H 1.48498 * 109.46986 * 329.99688 * 26 24 22 30 30 H 1.09007 * 109.47435 * 299.99479 * 1 2 3 31 31 H 1.08995 * 109.47344 * 59.99837 * 1 2 3 32 32 H 1.09006 * 109.47024 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47463 * 240.00611 * 2 1 3 34 34 H 1.09004 * 109.47266 * 119.99891 * 2 1 3 35 35 H 1.08998 * 109.74078 * 54.97910 * 5 3 2 36 36 H 1.08998 * 109.65779 * 294.41601 * 5 3 2 37 37 H 1.08004 * 120.03448 * 0.02562 * 10 9 7 38 38 H 1.08002 * 119.92418 * 180.29311 * 11 10 9 39 39 H 1.07996 * 120.07117 * 180.02562 * 16 14 12 40 40 H 1.09005 * 109.58464 * 173.64388 * 17 6 5 41 41 H 1.09003 * 109.58725 * 294.06990 * 17 6 5 42 42 H 1.08996 * 109.50038 * 65.31416 * 18 17 6 43 43 H 1.09002 * 109.50179 * 185.38154 * 18 17 6 44 44 H 0.97001 * 120.00049 * 95.00670 * 21 19 18 45 45 H 0.96998 * 120.00446 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6046 1.9824 -0.8409 5 6 1.6393 2.1263 1.3161 6 7 2.2449 3.4644 1.3508 7 6 1.4856 4.5564 1.5683 8 8 0.2987 4.4348 1.8014 9 6 2.0955 5.9012 1.5234 10 6 3.2491 6.1722 2.2624 11 6 3.8148 7.4286 2.2181 12 6 3.2409 8.4234 1.4422 13 9 3.7994 9.6530 1.4030 14 6 2.0941 8.1606 0.7051 15 9 1.5393 9.1340 -0.0498 16 6 1.5206 6.9053 0.7420 17 6 3.6951 3.5889 1.1499 18 6 4.0735 2.8883 -0.1588 19 6 3.5651 1.4452 -0.1258 20 1 3.8543 0.9371 -1.0457 21 7 4.1507 0.7477 1.0218 22 6 5.3879 0.1708 0.9139 23 1 5.9322 0.2304 -0.0170 24 6 5.9425 -0.4905 2.0011 25 7 5.2795 -0.5627 3.1357 26 14 7.6306 -1.2769 1.8541 27 1 8.6715 -0.2903 2.2393 28 1 7.7079 -2.4551 2.7547 29 1 7.8543 -1.7104 0.4516 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0007 1.5396 2.1607 36 1 0.5541 2.2148 1.3679 37 1 3.6975 5.3984 2.8679 38 1 4.7096 7.6368 2.7859 39 1 0.6287 6.7008 0.1683 40 1 3.9668 4.6429 1.0919 41 1 4.2208 3.1190 1.9812 42 1 3.6191 3.4149 -0.9980 43 1 5.1576 2.8901 -0.2722 44 1 3.6619 0.6943 1.8580 45 1 5.6671 -1.0245 3.8955 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037858053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:11 Heat of formation + Delta-G solvation = -87.247233 kcal Electronic energy + Delta-G solvation = -30039.880262 eV Core-core repulsion = 25693.525548 eV Total energy + Delta-G solvation = -4346.354714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.75599 -48.82730 -40.65573 -38.78950 -37.62207 -34.59308 -33.80597 -31.79330 -31.41843 -31.01870 -29.47549 -28.43875 -25.64374 -24.07309 -23.74590 -23.44220 -23.15148 -20.88970 -20.22985 -18.69230 -18.04900 -17.79624 -17.40347 -17.34158 -16.63622 -16.24303 -15.91461 -15.23498 -15.12070 -14.84649 -14.64538 -14.59251 -14.37455 -14.05682 -13.95962 -13.52850 -13.33280 -13.26836 -12.99285 -12.75107 -12.62023 -12.45059 -12.25405 -11.76610 -11.66780 -11.47735 -11.14297 -11.01746 -10.85980 -10.78554 -10.39103 -10.33256 -10.22214 -9.87600 -9.84774 -9.61671 -9.46123 -9.04024 -8.92997 -8.36744 -7.04135 -5.85088 -3.13727 0.34170 0.64190 2.49757 2.89828 3.21705 3.37091 3.43706 3.44493 3.44885 4.01452 4.21547 4.28886 4.52200 4.58372 4.72293 5.02023 5.17638 5.24556 5.30275 5.41020 5.42962 5.46264 5.48739 5.52872 5.60269 5.63622 5.73756 5.74836 5.80667 5.85361 6.00631 6.08404 6.10441 6.26644 6.31388 6.32690 6.35918 6.49925 6.54285 6.63679 6.69427 6.86564 6.92688 7.51293 7.63356 8.14093 8.33294 9.45307 10.01100 10.36274 11.37140 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012203 B = 0.003433 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.961494 B = 8153.806715 C = 9726.426328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.067 0.933 5 C 0.118 3.882 6 N -0.589 5.589 7 C 0.556 3.444 8 O -0.540 6.540 9 C -0.098 4.098 10 C -0.068 4.068 11 C -0.128 4.128 12 C 0.083 3.917 13 F -0.126 7.126 14 C 0.063 3.937 15 F -0.126 7.126 16 C -0.080 4.080 17 C 0.102 3.898 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.718 5.718 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.010 4.010 25 N -0.932 5.932 26 Si 0.903 3.097 27 H -0.291 1.291 28 H -0.292 1.292 29 H -0.283 1.283 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.152 0.848 38 H 0.154 0.846 39 H 0.153 0.847 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.075 0.925 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.832 13.506 -4.473 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.003 4.003 6 N -0.320 5.320 7 C 0.343 3.657 8 O -0.418 6.418 9 C -0.101 4.101 10 C -0.086 4.086 11 C -0.146 4.146 12 C 0.062 3.938 13 F -0.105 7.105 14 C 0.043 3.957 15 F -0.105 7.105 16 C -0.099 4.099 17 C -0.020 4.020 18 C -0.191 4.191 19 C 0.067 3.933 20 H 0.070 0.930 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.209 1.209 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.170 0.830 38 H 0.172 0.828 39 H 0.170 0.830 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.068 0.932 43 H 0.094 0.906 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.286 13.407 -4.425 15.454 hybrid contribution 1.024 -0.006 0.073 1.027 sum -5.262 13.400 -4.352 15.040 Atomic orbital electron populations 1.21859 0.96789 1.01109 1.01347 1.21417 0.94287 0.95645 1.03455 1.21839 0.97444 0.96221 0.96797 0.91479 1.21864 0.98868 0.81027 0.98587 1.48083 1.08956 1.06375 1.68574 1.18042 0.86139 0.83789 0.77699 1.90794 1.15136 1.86433 1.49486 1.19848 0.96292 0.94710 0.99278 1.21396 0.93202 0.96632 0.97414 1.21059 1.01882 0.91852 0.99855 1.17881 0.93569 0.81932 1.00399 1.91546 1.84176 1.39653 1.95089 1.17446 0.94440 0.87200 0.96592 1.91548 1.84448 1.60905 1.73580 1.21007 1.00271 0.89664 0.98978 1.22085 0.78823 1.00646 1.00429 1.22529 1.01950 0.99259 0.95365 1.20233 0.89680 0.90632 0.92729 0.93029 1.42473 1.19120 1.63976 1.10510 1.19210 0.93608 1.27065 0.97101 0.91258 1.24684 0.98498 1.01376 0.96022 1.69637 1.38081 1.48041 1.02237 0.86256 0.84409 0.78796 0.77087 1.21824 1.21888 1.20853 0.92776 0.93371 0.93119 0.91964 0.90431 0.90294 0.89383 0.82996 0.82820 0.82965 0.90520 0.89225 0.93249 0.90595 0.78109 0.93504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.68 37.16 0.36 -1.61 16 2 C -0.11 -1.65 5.19 -26.73 -0.14 -1.79 16 3 C -0.10 -1.55 2.15 -90.27 -0.19 -1.75 16 4 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 5 C 0.12 1.84 5.04 -3.49 -0.02 1.82 16 6 N -0.59 -8.65 2.97 -173.66 -0.52 -9.16 16 7 C 0.56 8.22 7.23 -12.38 -0.09 8.14 16 8 O -0.54 -9.56 16.47 5.31 0.09 -9.48 16 9 C -0.10 -1.18 5.00 -104.97 -0.52 -1.70 16 10 C -0.07 -0.68 7.36 -39.20 -0.29 -0.97 16 11 C -0.13 -1.15 10.01 -39.59 -0.40 -1.54 16 12 C 0.08 0.87 7.31 -39.23 -0.29 0.58 16 13 F -0.13 -1.41 17.17 2.25 0.04 -1.37 16 14 C 0.06 0.71 7.30 -39.43 -0.29 0.42 16 15 F -0.13 -1.49 17.18 2.25 0.04 -1.46 16 16 C -0.08 -0.90 9.71 -39.13 -0.38 -1.28 16 17 C 0.10 1.44 5.11 -3.71 -0.02 1.43 16 18 C -0.15 -2.27 5.78 -26.61 -0.15 -2.42 16 19 C 0.18 3.07 2.53 -67.88 -0.17 2.89 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.72 -15.44 3.72 -53.38 -0.20 -15.64 16 22 C -0.24 -5.92 9.93 -15.06 -0.15 -6.07 16 23 H 0.07 1.70 7.83 -52.48 -0.41 1.29 16 24 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 25 N -0.93 -25.97 13.06 55.49 0.72 -25.25 16 26 Si 0.90 21.05 29.55 -169.99 -5.02 16.03 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 29 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 30 H 0.05 0.69 6.70 -51.93 -0.35 0.35 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 1.36 7.70 -51.93 -0.40 0.96 16 35 H 0.08 1.37 6.63 -51.93 -0.34 1.02 16 36 H 0.09 1.38 5.75 -51.93 -0.30 1.08 16 37 H 0.15 1.41 7.07 -52.48 -0.37 1.04 16 38 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.08 0.90 4.56 -51.93 -0.24 0.67 16 41 H 0.09 1.48 7.74 -51.93 -0.40 1.08 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.38 8.86 5.93 -40.82 -0.24 8.62 16 45 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 367.54 15.07 5.54 5.54 Total: -1.00 -28.41 367.54 -8.13 -36.54 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -5.99 Total: 8.44 kcal Atomic # 6 Polarization: -1.37 SS G_CDS: -2.83 Total: -4.20 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.01 Total: -50.05 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 0.08 Total: -2.82 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.41 -8.13 -36.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037858053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.704 kcal (2) G-P(sol) polarization free energy of solvation -28.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds