Wall clock time and date at job start Tue Mar 31 2020 21:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47480 * 2 1 4 4 H 1.09000 * 109.52259 * 54.92286 * 3 2 1 5 5 C 1.53194 * 109.49910 * 294.84263 * 3 2 1 6 6 N 1.46927 * 108.77732 * 185.41341 * 5 3 2 7 7 C 1.34774 * 120.63023 * 233.62994 * 6 5 3 8 8 O 1.21570 * 119.99782 * 355.84852 * 7 6 5 9 9 C 1.47699 * 120.00084 * 175.84424 * 7 6 5 10 10 C 1.39651 * 120.15392 * 54.23348 * 9 7 6 11 11 C 1.38070 * 119.85246 * 179.71957 * 10 9 7 12 12 F 1.35098 * 119.91841 * 180.25183 * 11 10 9 13 13 C 1.38655 * 120.16328 * 0.55735 * 11 10 9 14 14 C 1.38189 * 120.31615 * 359.71550 * 13 11 10 15 15 C 1.38308 * 120.14191 * 0.02562 * 14 13 11 16 16 F 1.35110 * 120.08178 * 180.02562 * 15 14 13 17 17 C 1.46928 * 118.73616 * 53.60327 * 6 5 3 18 18 C 1.53184 * 108.76645 * 306.38481 * 17 6 5 19 19 C 1.53036 * 109.31423 * 54.66074 * 18 17 6 20 20 H 1.08998 * 109.46113 * 58.62607 * 19 18 17 21 21 N 1.46496 * 109.46386 * 178.59802 * 19 18 17 22 22 C 1.36936 * 119.99958 * 275.02896 * 21 19 18 23 23 H 1.07998 * 120.00151 * 359.97438 * 22 21 19 24 24 C 1.38818 * 120.00168 * 179.97438 * 22 21 19 25 25 N 1.31623 * 119.99714 * 359.97438 * 24 22 21 26 26 Si 1.86791 * 120.00230 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47327 * 180.02562 * 26 24 22 28 28 H 1.48503 * 109.47252 * 299.99838 * 26 24 22 29 29 H 1.48499 * 109.47226 * 59.99564 * 26 24 22 30 30 H 1.09000 * 109.46675 * 300.00006 * 1 2 3 31 31 H 1.08997 * 109.47272 * 59.99407 * 1 2 3 32 32 H 1.08997 * 109.47309 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46675 * 239.99994 * 2 1 3 34 34 H 1.08997 * 109.47272 * 120.00593 * 2 1 3 35 35 H 1.09001 * 109.58721 * 305.19934 * 5 3 2 36 36 H 1.08997 * 109.58769 * 65.48260 * 5 3 2 37 37 H 1.08010 * 120.07153 * 359.97438 * 10 9 7 38 38 H 1.07997 * 119.83812 * 179.70065 * 13 11 10 39 39 H 1.07994 * 119.92872 * 180.02562 * 14 13 11 40 40 H 1.09000 * 109.58393 * 66.18910 * 17 6 5 41 41 H 1.09002 * 109.57970 * 186.46269 * 17 6 5 42 42 H 1.08995 * 109.51468 * 294.69569 * 18 17 6 43 43 H 1.09004 * 109.48624 * 174.60400 * 18 17 6 44 44 H 0.97004 * 119.99979 * 95.02080 * 21 19 18 45 45 H 0.97001 * 120.00065 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6049 1.9827 0.8408 5 6 1.6385 2.1268 -1.3104 6 7 2.2452 3.4644 -1.3507 7 6 1.4858 4.5565 -1.5672 8 8 0.3001 4.4347 -1.8063 9 6 2.0941 5.9014 -1.5137 10 6 3.2087 6.1990 -2.3008 11 6 3.7688 7.4599 -2.2503 12 9 4.8439 7.7508 -3.0149 13 6 3.2344 8.4266 -1.4120 14 6 2.1351 8.1379 -0.6261 15 6 1.5605 6.8806 -0.6705 16 9 0.4854 6.5998 0.0981 17 6 3.6954 3.5886 -1.1498 18 6 4.0734 2.8881 0.1590 19 6 3.5653 1.4449 0.1257 20 1 4.0009 0.9262 -0.7283 21 7 3.9542 0.7619 1.3619 22 6 5.1921 0.1856 1.4654 23 1 5.8816 0.2344 0.6356 24 6 5.5609 -0.4612 2.6370 25 7 4.7208 -0.5202 3.6486 26 14 7.2492 -1.2478 2.7780 27 1 7.3953 -1.8697 4.1186 28 1 7.3988 -2.2899 1.7306 29 1 8.2956 -0.2099 2.5965 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.9964 1.5378 -2.1549 36 1 0.5532 2.2139 -1.3596 37 1 3.6290 5.4456 -2.9506 38 1 3.6797 9.4097 -1.3731 39 1 1.7238 8.8956 0.0242 40 1 4.2209 3.1189 -1.9812 41 1 3.9674 4.6427 -1.0944 42 1 3.6190 3.4146 0.9982 43 1 5.1576 2.8895 0.2722 44 1 3.3349 0.7178 2.1072 45 1 4.9786 -0.9718 4.4674 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037863512.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:20 Heat of formation + Delta-G solvation = -89.001578 kcal Electronic energy + Delta-G solvation = -30017.797713 eV Core-core repulsion = 25671.366925 eV Total energy + Delta-G solvation = -4346.430788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.29664 -49.18580 -40.60795 -38.78251 -37.69401 -34.86708 -33.84419 -32.09158 -31.72018 -30.42475 -29.56203 -28.66762 -25.70905 -24.18524 -24.01513 -23.04268 -22.64165 -20.89367 -20.29871 -19.43621 -17.93257 -17.89075 -17.52128 -17.13960 -16.77283 -16.17510 -15.93296 -15.61851 -15.03743 -14.94494 -14.75619 -14.56675 -14.19904 -14.03295 -13.79687 -13.59829 -13.35533 -13.22242 -13.11734 -12.86060 -12.70893 -12.34247 -12.18771 -11.88219 -11.72141 -11.65607 -11.32690 -10.95430 -10.88969 -10.74176 -10.41371 -10.26170 -10.19289 -10.05138 -9.78427 -9.64103 -9.57143 -8.99243 -8.91832 -8.59036 -6.99906 -5.80292 -3.09312 0.30920 0.53296 2.39212 2.76102 3.05497 3.40599 3.45579 3.46547 3.71449 3.74647 4.04155 4.26503 4.43829 4.54771 4.63366 4.93722 5.07456 5.17036 5.21226 5.29191 5.37987 5.40654 5.46464 5.50786 5.51093 5.57473 5.59038 5.64331 5.64921 5.84466 5.96198 6.07771 6.11712 6.25885 6.27503 6.31740 6.34788 6.42190 6.49945 6.63023 6.78306 6.92089 7.01090 7.31900 7.65193 7.99452 8.37691 9.49227 10.06161 10.41119 11.41977 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011826 B = 0.003409 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.089919 B = 8212.389260 C = 9534.050330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.070 0.930 5 C 0.119 3.881 6 N -0.594 5.594 7 C 0.560 3.440 8 O -0.528 6.528 9 C -0.127 4.127 10 C -0.097 4.097 11 C 0.087 3.913 12 F -0.131 7.131 13 C -0.107 4.107 14 C -0.128 4.128 15 C 0.137 3.863 16 F -0.119 7.119 17 C 0.097 3.903 18 C -0.152 4.152 19 C 0.184 3.816 20 H 0.049 0.951 21 N -0.719 5.719 22 C -0.240 4.240 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.292 1.292 28 H -0.286 1.286 29 H -0.287 1.287 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.689 16.024 -12.072 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.003 4.003 6 N -0.325 5.325 7 C 0.347 3.653 8 O -0.405 6.405 9 C -0.131 4.131 10 C -0.116 4.116 11 C 0.067 3.933 12 F -0.109 7.109 13 C -0.126 4.126 14 C -0.146 4.146 15 C 0.117 3.883 16 F -0.097 7.097 17 C -0.026 4.026 18 C -0.193 4.193 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.217 1.217 28 H -0.213 1.213 29 H -0.213 1.213 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.218 0.782 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -5.145 15.826 -12.193 20.631 hybrid contribution 0.962 -0.373 0.492 1.143 sum -4.183 15.454 -11.701 19.830 Atomic orbital electron populations 1.21849 0.96769 1.01101 1.01337 1.21446 0.94404 0.95523 1.03557 1.21797 0.97755 0.96384 0.96576 0.91108 1.21831 0.99519 0.80757 0.98153 1.48094 1.08727 1.06540 1.69173 1.17899 0.86134 0.83605 0.77707 1.90814 1.14938 1.86224 1.48570 1.19828 0.97770 0.95360 1.00139 1.21169 0.94470 0.96285 0.99707 1.17448 0.87357 0.93994 0.94487 1.91550 1.52273 1.93751 1.73358 1.21148 0.96108 1.00013 0.95322 1.20982 0.96859 0.95490 1.01315 1.17608 0.85837 0.93216 0.91654 1.91596 1.51770 1.93982 1.72349 1.22157 0.79070 1.01671 0.99730 1.22694 1.02365 0.99311 0.94901 1.20184 0.90720 0.90463 0.91328 0.93324 1.42395 1.16486 1.64415 1.12674 1.19162 0.91811 1.27569 0.98610 0.91288 1.24721 0.98101 1.01458 0.96404 1.69649 1.35287 1.48293 1.04712 0.86308 0.84140 0.79191 0.76760 1.21745 1.21293 1.21329 0.92952 0.93219 0.93107 0.92393 0.89693 0.91232 0.88946 0.82964 0.83168 0.82892 0.90962 0.90139 0.92133 0.90381 0.78165 0.93446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 37.16 0.36 -1.74 16 2 C -0.11 -1.76 5.31 -26.73 -0.14 -1.90 16 3 C -0.11 -1.69 1.92 -90.50 -0.17 -1.86 16 4 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 5 C 0.12 1.70 5.32 -3.71 -0.02 1.68 16 6 N -0.59 -8.28 2.97 -173.94 -0.52 -8.80 16 7 C 0.56 8.32 6.91 -12.40 -0.09 8.23 16 8 O -0.53 -9.47 16.31 5.30 0.09 -9.39 16 9 C -0.13 -1.54 4.89 -104.92 -0.51 -2.06 16 10 C -0.10 -0.95 7.40 -39.12 -0.29 -1.24 16 11 C 0.09 0.76 7.29 -39.49 -0.29 0.48 16 12 F -0.13 -1.21 17.26 2.25 0.04 -1.17 16 13 C -0.11 -0.78 10.01 -39.45 -0.39 -1.17 16 14 C -0.13 -1.04 10.01 -39.57 -0.40 -1.44 16 15 C 0.14 1.60 7.27 -38.97 -0.28 1.31 16 16 F -0.12 -1.64 16.67 2.25 0.04 -1.61 16 17 C 0.10 1.22 5.53 -3.71 -0.02 1.20 16 18 C -0.15 -2.46 5.66 -26.62 -0.15 -2.61 16 19 C 0.18 3.35 2.19 -67.89 -0.15 3.20 16 20 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 21 N -0.72 -16.82 4.33 -53.39 -0.23 -17.06 16 22 C -0.24 -6.30 9.93 -15.06 -0.15 -6.45 16 23 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -27.27 13.06 55.49 0.72 -26.54 16 26 Si 0.90 21.73 29.55 -169.99 -5.02 16.70 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.62 7.22 -51.93 -0.37 1.24 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.09 1.38 5.75 -51.93 -0.30 1.08 16 37 H 0.15 1.28 7.37 -52.48 -0.39 0.89 16 38 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16 39 H 0.15 0.85 8.06 -52.49 -0.42 0.42 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.90 4.72 -51.93 -0.25 0.65 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.38 9.77 7.51 -40.82 -0.31 9.46 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 LS Contribution 371.03 15.07 5.59 5.59 Total: -1.00 -30.92 371.03 -8.24 -39.15 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -6.15 Total: 7.86 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -2.79 Total: -4.75 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.02 Total: -52.40 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.39 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.92 -8.24 -39.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037863512.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.847 kcal (2) G-P(sol) polarization free energy of solvation -30.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds