Wall clock time and date at job start Tue Mar 31 2020 21:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47150 * 2 1 4 4 H 1.08997 * 109.49812 * 304.99566 * 3 2 1 5 5 C 1.53193 * 109.49774 * 65.06665 * 3 2 1 6 6 N 1.46923 * 108.77410 * 174.58531 * 5 3 2 7 7 C 1.34776 * 120.62975 * 126.36558 * 6 5 3 8 8 O 1.21569 * 120.00460 * 355.10034 * 7 6 5 9 9 C 1.47699 * 119.99778 * 175.09334 * 7 6 5 10 10 C 1.39657 * 120.15882 * 322.02254 * 9 7 6 11 11 C 1.38062 * 119.85424 * 180.02562 * 10 9 7 12 12 F 1.35100 * 119.92104 * 179.97438 * 11 10 9 13 13 C 1.38656 * 120.16258 * 359.97438 * 11 10 9 14 14 C 1.38185 * 120.31895 * 359.97438 * 13 11 10 15 15 C 1.38309 * 120.14241 * 359.77172 * 14 13 11 16 16 F 1.35103 * 120.08237 * 180.25536 * 15 14 13 17 17 C 1.46929 * 118.73713 * 306.38646 * 6 5 3 18 18 C 1.53199 * 108.77257 * 53.61375 * 17 6 5 19 19 C 1.53034 * 109.33872 * 305.37432 * 18 17 6 20 20 H 1.09004 * 109.43857 * 301.32100 * 19 18 17 21 21 N 1.46494 * 109.48542 * 181.35386 * 19 18 17 22 22 C 1.36944 * 119.99607 * 84.92039 * 21 19 18 23 23 H 1.07994 * 120.00100 * 359.97438 * 22 21 19 24 24 C 1.38809 * 119.99745 * 180.02562 * 22 21 19 25 25 N 1.31620 * 120.00493 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00038 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47147 * 0.02562 * 26 24 22 28 28 H 1.48494 * 109.47516 * 119.99667 * 26 24 22 29 29 H 1.48497 * 109.47287 * 240.00085 * 26 24 22 30 30 H 1.08997 * 109.46976 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46813 * 300.00460 * 1 2 3 32 32 H 1.09001 * 109.46769 * 60.00144 * 1 2 3 33 33 H 1.09001 * 109.46813 * 239.99540 * 2 1 3 34 34 H 1.09001 * 109.46769 * 119.99856 * 2 1 3 35 35 H 1.09002 * 109.58578 * 294.36831 * 5 3 2 36 36 H 1.08997 * 109.58639 * 54.65407 * 5 3 2 37 37 H 1.08003 * 120.07189 * 359.97343 * 10 9 7 38 38 H 1.08010 * 119.84306 * 180.02562 * 13 11 10 39 39 H 1.07998 * 119.92984 * 180.02562 * 14 13 11 40 40 H 1.09003 * 109.58244 * 173.39212 * 17 6 5 41 41 H 1.08997 * 109.58707 * 293.68071 * 17 6 5 42 42 H 1.08997 * 109.49537 * 65.31600 * 18 17 6 43 43 H 1.09003 * 109.49237 * 185.37911 * 18 17 6 44 44 H 0.96998 * 120.00650 * 264.91400 * 21 19 18 45 45 H 0.96998 * 120.00408 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6058 1.9819 -0.8417 5 6 1.6366 2.1275 1.3095 6 7 2.2431 3.4651 1.3499 7 6 1.4833 4.5574 1.5646 8 8 0.2744 4.4521 1.6382 9 6 2.1195 5.8823 1.7105 10 6 3.3318 6.0073 2.3924 11 6 3.9206 7.2489 2.5256 12 9 5.0931 7.3714 3.1855 13 6 3.3116 8.3705 1.9837 14 6 2.1125 8.2547 1.3067 15 6 1.5139 7.0164 1.1611 16 9 0.3442 6.9039 0.4945 17 6 3.6936 3.5893 1.1513 18 6 4.0740 2.8879 -0.1565 19 6 3.5655 1.4449 -0.1241 20 1 4.0001 0.9262 0.7304 21 7 3.9557 0.7615 -1.3597 22 6 5.1939 0.1856 -1.4619 23 1 5.8829 0.2356 -0.6318 24 6 5.5639 -0.4615 -2.6329 25 7 4.7244 -0.5221 -3.6448 26 14 7.2531 -1.2465 -2.7726 27 1 8.0008 -1.0410 -1.5060 28 1 7.1033 -2.7016 -3.0277 29 1 7.9982 -0.6213 -3.8947 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5512 2.2169 1.3557 36 1 1.9910 1.5376 2.1547 37 1 3.8072 5.1347 2.8154 38 1 3.7770 9.3394 2.0906 39 1 1.6439 9.1324 0.8868 40 1 3.9655 4.6433 1.0931 41 1 4.2179 3.1221 1.9850 42 1 3.6210 3.4141 -0.9966 43 1 5.1583 2.8896 -0.2680 44 1 3.3370 0.7167 -2.1055 45 1 4.9831 -0.9740 -4.4632 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037863516.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:24 Heat of formation + Delta-G solvation = -84.330905 kcal Electronic energy + Delta-G solvation = -29990.459313 eV Core-core repulsion = 25644.231060 eV Total energy + Delta-G solvation = -4346.228253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.29305 -49.16160 -40.65326 -38.76852 -37.68939 -34.92283 -33.85496 -32.09968 -31.72540 -30.41927 -29.56568 -28.65322 -25.72823 -24.23255 -24.05497 -22.97089 -22.65009 -20.89516 -20.31645 -19.46828 -17.97831 -17.81683 -17.50142 -17.13331 -16.69383 -16.19936 -15.91665 -15.62049 -15.08247 -14.94051 -14.75629 -14.55078 -14.16269 -14.02530 -13.78251 -13.57238 -13.36352 -13.25941 -13.10127 -12.86048 -12.76166 -12.35012 -12.16837 -11.91835 -11.71808 -11.56413 -11.31784 -10.97658 -10.88635 -10.75479 -10.40635 -10.22359 -10.16351 -10.03276 -9.78860 -9.63757 -9.56771 -9.00330 -8.91895 -8.57959 -6.99852 -5.80798 -3.09785 0.24514 0.52771 2.42381 2.79539 3.11885 3.39800 3.45566 3.47892 3.70745 3.74185 4.03491 4.24261 4.43708 4.54505 4.61305 4.91928 5.07282 5.17041 5.20660 5.28474 5.36010 5.40402 5.45297 5.48822 5.50685 5.57421 5.58811 5.64078 5.64818 5.84880 5.95934 6.07915 6.11849 6.25376 6.27197 6.32220 6.35176 6.42343 6.50493 6.63302 6.78311 6.92274 7.01114 7.32558 7.65961 8.01544 8.37173 9.48916 10.05918 10.40749 11.41603 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012092 B = 0.003364 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.077331 B = 8320.506115 C = 9748.219491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.071 0.929 5 C 0.119 3.881 6 N -0.595 5.595 7 C 0.559 3.441 8 O -0.527 6.527 9 C -0.134 4.134 10 C -0.096 4.096 11 C 0.083 3.917 12 F -0.131 7.131 13 C -0.103 4.103 14 C -0.132 4.132 15 C 0.144 3.856 16 F -0.115 7.115 17 C 0.092 3.908 18 C -0.152 4.152 19 C 0.184 3.816 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.239 4.239 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.157 0.843 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.084 0.916 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.078 0.922 44 H 0.384 0.616 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.592 16.034 13.329 21.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.003 4.003 6 N -0.327 5.327 7 C 0.346 3.654 8 O -0.405 6.405 9 C -0.138 4.138 10 C -0.116 4.116 11 C 0.063 3.937 12 F -0.109 7.109 13 C -0.122 4.122 14 C -0.151 4.151 15 C 0.123 3.877 16 F -0.093 7.093 17 C -0.031 4.031 18 C -0.193 4.193 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.370 4.370 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.174 0.826 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.218 0.782 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.058 15.852 13.376 21.349 hybrid contribution 0.966 -0.385 -0.515 1.161 sum -4.092 15.467 12.861 20.527 Atomic orbital electron populations 1.21849 0.96762 1.01072 1.01351 1.21451 0.94411 0.95554 1.03529 1.21792 0.97692 0.96366 0.96645 0.91089 1.21827 0.99588 0.80722 0.98142 1.48046 1.08660 1.06576 1.69410 1.17886 0.86534 0.83400 0.77622 1.90817 1.13231 1.85664 1.50755 1.19877 0.96505 0.94159 1.03257 1.21390 0.93840 0.97646 0.98699 1.17462 0.84265 0.93994 0.97954 1.91553 1.44363 1.96654 1.78341 1.21168 0.95101 0.98810 0.97153 1.20989 0.96160 0.96602 1.01375 1.17646 0.83065 0.93026 0.93942 1.91604 1.44002 1.96683 1.77056 1.22339 0.79242 1.01755 0.99717 1.22703 1.02351 0.99331 0.94908 1.20185 0.90741 0.90452 0.91323 0.93341 1.42413 1.16498 1.64392 1.12699 1.19254 0.91761 1.27364 0.98637 0.91166 1.24723 0.98112 1.01497 0.96415 1.69667 1.35164 1.48347 1.04721 0.86166 0.84024 0.78912 0.77359 1.20587 1.21908 1.21936 0.93129 0.93224 0.92943 0.89718 0.92414 0.88897 0.91234 0.82555 0.83173 0.82915 0.89770 0.90971 0.92097 0.90351 0.78168 0.93547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 37.16 0.36 -1.74 16 2 C -0.11 -1.77 5.31 -26.73 -0.14 -1.91 16 3 C -0.10 -1.69 1.92 -90.50 -0.17 -1.86 16 4 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 5 C 0.12 1.69 5.33 -3.71 -0.02 1.67 16 6 N -0.60 -8.24 2.97 -173.93 -0.52 -8.76 16 7 C 0.56 8.28 7.23 -12.40 -0.09 8.19 16 8 O -0.53 -9.46 15.62 5.31 0.08 -9.37 16 9 C -0.13 -1.61 5.23 -104.92 -0.55 -2.16 16 10 C -0.10 -0.94 7.32 -39.12 -0.29 -1.22 16 11 C 0.08 0.72 7.29 -39.49 -0.29 0.44 16 12 F -0.13 -1.21 17.26 2.25 0.04 -1.17 16 13 C -0.10 -0.73 10.01 -39.45 -0.39 -1.13 16 14 C -0.13 -1.05 10.01 -39.57 -0.40 -1.44 16 15 C 0.14 1.65 7.24 -38.97 -0.28 1.37 16 16 F -0.12 -1.59 16.20 2.25 0.04 -1.55 16 17 C 0.09 1.15 4.84 -3.71 -0.02 1.14 16 18 C -0.15 -2.46 5.66 -26.61 -0.15 -2.61 16 19 C 0.18 3.34 2.19 -67.89 -0.15 3.20 16 20 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 21 N -0.72 -16.84 4.33 -53.39 -0.23 -17.07 16 22 C -0.24 -6.26 9.93 -15.06 -0.15 -6.41 16 23 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -27.29 13.06 55.49 0.72 -26.57 16 26 Si 0.90 21.74 29.55 -169.99 -5.02 16.72 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 29 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 32 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.61 7.22 -51.93 -0.37 1.24 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 1.38 5.71 -51.93 -0.30 1.08 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.16 1.34 6.29 -52.48 -0.33 1.01 16 38 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 39 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 40 H 0.08 0.93 4.53 -51.93 -0.24 0.69 16 41 H 0.07 0.79 8.09 -51.93 -0.42 0.37 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 44 H 0.38 9.78 7.51 -40.82 -0.31 9.48 16 45 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -31.03 368.38 -8.24 -39.27 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -6.08 Total: 7.86 kcal Atomic # 6 Polarization: -2.08 SS G_CDS: -2.82 Total: -4.91 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.02 Total: -52.40 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.08 Total: -2.72 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.03 -8.24 -39.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037863516.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.057 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds