Wall clock time and date at job start Tue Mar 31 2020 21:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47067 * 2 1 4 4 H 1.09004 * 109.49653 * 305.06318 * 3 2 1 5 5 C 1.53629 * 109.43646 * 65.28388 * 3 2 1 6 6 N 1.46919 * 108.54429 * 174.72685 * 5 3 2 7 7 C 1.34780 * 120.62914 * 126.37099 * 6 5 3 8 8 O 1.21564 * 120.00216 * 3.91160 * 7 6 5 9 9 C 1.47698 * 119.99913 * 183.90853 * 7 6 5 10 10 C 1.39655 * 120.15267 * 305.82731 * 9 7 6 11 11 C 1.38068 * 119.85045 * 179.97438 * 10 9 7 12 12 F 1.35102 * 119.91746 * 179.97438 * 11 10 9 13 13 C 1.38658 * 120.16384 * 359.72342 * 11 10 9 14 14 C 1.38183 * 120.31490 * 0.55866 * 13 11 10 15 15 C 1.38316 * 120.14603 * 359.43795 * 14 13 11 16 16 F 1.35091 * 120.08671 * 180.25677 * 15 14 13 17 17 C 1.46931 * 118.73929 * 306.09219 * 6 5 3 18 18 C 1.53196 * 108.77440 * 53.86459 * 17 6 5 19 19 C 1.53041 * 109.49872 * 184.99754 * 3 2 1 20 20 H 1.08996 * 109.44939 * 58.67049 * 19 3 2 21 21 N 1.46498 * 109.46173 * 298.69918 * 19 3 2 22 22 C 1.36939 * 120.00221 * 154.92909 * 21 19 3 23 23 H 1.07999 * 119.99657 * 0.02562 * 22 21 19 24 24 C 1.38810 * 120.00136 * 180.02562 * 22 21 19 25 25 N 1.31618 * 119.99860 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99917 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46961 * 60.00061 * 26 24 22 28 28 H 1.48501 * 109.47040 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.47213 * 300.00036 * 26 24 22 30 30 H 1.08997 * 109.47643 * 300.00323 * 1 2 3 31 31 H 1.09001 * 109.47317 * 60.00626 * 1 2 3 32 32 H 1.08999 * 109.46975 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47643 * 239.99676 * 2 1 3 34 34 H 1.09001 * 109.47317 * 119.99374 * 2 1 3 35 35 H 1.08999 * 109.73447 * 54.98835 * 5 3 2 36 36 H 1.09007 * 109.66136 * 294.42262 * 5 3 2 37 37 H 1.07998 * 120.07951 * 0.02562 * 10 9 7 38 38 H 1.08006 * 119.84265 * 180.27328 * 13 11 10 39 39 H 1.08006 * 119.92729 * 179.72584 * 14 13 11 40 40 H 1.09003 * 109.58239 * 173.64712 * 17 6 5 41 41 H 1.08997 * 109.58675 * 294.07438 * 17 6 5 42 42 H 1.09000 * 109.49486 * 65.31222 * 18 17 6 43 43 H 1.08996 * 109.49618 * 185.37848 * 18 17 6 44 44 H 0.96999 * 119.99660 * 334.93897 * 21 19 3 45 45 H 0.96993 * 119.99833 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6046 1.9823 -0.8411 5 6 1.6392 2.1264 1.3160 6 7 2.2449 3.4645 1.3505 7 6 1.4855 4.5566 1.5679 8 8 0.3001 4.4346 1.8083 9 6 2.0936 5.9015 1.5142 10 6 3.2097 6.1986 2.2993 11 6 3.7734 7.4577 2.2438 12 9 4.8528 7.7468 3.0032 13 6 3.2377 8.4247 1.4067 14 6 2.1300 8.1399 0.6312 15 6 1.5549 6.8827 0.6767 16 9 0.4752 6.6040 -0.0859 17 6 3.6951 3.5889 1.1498 18 6 4.0736 2.8882 -0.1589 19 6 3.5652 1.4451 -0.1257 20 1 3.8544 0.9370 -1.0456 21 7 4.1507 0.7477 1.0219 22 6 5.3879 0.1708 0.9142 23 1 5.9322 0.2302 -0.0167 24 6 5.9424 -0.4905 2.0015 25 7 5.2788 -0.5634 3.1358 26 14 7.6304 -1.2768 1.8547 27 1 8.6340 -0.2354 1.5182 28 1 7.9928 -1.9156 3.1454 29 1 7.6060 -2.3052 0.7837 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 2.0006 1.5397 2.1606 36 1 0.5540 2.2150 1.3677 37 1 3.6314 5.4450 2.9479 38 1 3.6856 9.4066 1.3641 39 1 1.7152 8.8991 -0.0153 40 1 3.9668 4.6430 1.0917 41 1 4.2207 3.1192 1.9811 42 1 3.6192 3.4148 -0.9981 43 1 5.1576 2.8901 -0.2722 44 1 3.6618 0.6945 1.8581 45 1 5.6664 -1.0251 3.8956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037863518.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:28 Heat of formation + Delta-G solvation = -87.174542 kcal Electronic energy + Delta-G solvation = -30454.190375 eV Core-core repulsion = 26107.838813 eV Total energy + Delta-G solvation = -4346.351562 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.17780 -49.13486 -40.49232 -38.74672 -37.64705 -34.57356 -33.78046 -31.99267 -31.66884 -30.32517 -29.46772 -28.47471 -25.73489 -23.99440 -23.93853 -23.39030 -22.89445 -20.86730 -20.21006 -18.64541 -17.83799 -17.68811 -17.38497 -17.33868 -16.63019 -16.05352 -15.80439 -15.53718 -15.00214 -14.69867 -14.64210 -14.47957 -14.33282 -14.01993 -13.81304 -13.55172 -13.30920 -13.15557 -13.07221 -12.74314 -12.55783 -12.34502 -12.17083 -11.79418 -11.67664 -11.44483 -11.11030 -11.00036 -10.83555 -10.76780 -10.35704 -10.30544 -10.22817 -9.89908 -9.83374 -9.58438 -9.45417 -8.95344 -8.88892 -8.33295 -7.01403 -5.82094 -3.10774 0.40473 0.62680 2.53799 2.92274 3.17972 3.39909 3.45369 3.46100 3.81439 3.84284 4.16586 4.37884 4.54600 4.54942 4.73392 5.04232 5.18544 5.25224 5.30406 5.45097 5.48206 5.50384 5.54816 5.55747 5.62151 5.66893 5.68211 5.76764 5.78065 5.88212 6.03695 6.11691 6.13746 6.29843 6.34382 6.36079 6.38688 6.52842 6.57020 6.66605 6.72138 6.89501 6.95722 7.53308 7.65402 8.16533 8.36312 9.48081 10.04002 10.39269 11.40153 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011079 B = 0.004037 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.602310 B = 6934.902367 C = 8754.465316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.067 0.933 5 C 0.119 3.881 6 N -0.589 5.589 7 C 0.557 3.443 8 O -0.533 6.533 9 C -0.124 4.124 10 C -0.095 4.095 11 C 0.088 3.912 12 F -0.130 7.130 13 C -0.109 4.109 14 C -0.130 4.130 15 C 0.134 3.866 16 F -0.121 7.121 17 C 0.104 3.896 18 C -0.149 4.149 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.718 5.718 22 C -0.239 4.239 23 H 0.069 0.931 24 C -0.010 4.010 25 N -0.932 5.932 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.152 0.848 40 H 0.073 0.927 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.076 0.924 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.005 15.940 -5.518 17.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.003 4.003 6 N -0.319 5.319 7 C 0.343 3.657 8 O -0.411 6.411 9 C -0.128 4.128 10 C -0.114 4.114 11 C 0.068 3.932 12 F -0.109 7.109 13 C -0.128 4.128 14 C -0.149 4.149 15 C 0.114 3.886 16 F -0.099 7.099 17 C -0.018 4.018 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.070 0.930 21 N -0.361 5.361 22 C -0.370 4.370 23 H 0.087 0.913 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.173 0.827 38 H 0.167 0.833 39 H 0.170 0.830 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.067 0.933 43 H 0.094 0.906 44 H 0.219 0.781 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.462 15.750 -5.421 17.866 hybrid contribution 1.045 -0.431 0.245 1.157 sum -5.417 15.319 -5.176 17.053 Atomic orbital electron populations 1.21857 0.96782 1.01086 1.01378 1.21414 0.94297 0.95609 1.03449 1.21840 0.97439 0.96231 0.96799 0.91468 1.21869 0.98875 0.80947 0.98612 1.48072 1.08914 1.06325 1.68631 1.17892 0.86153 0.83624 0.78001 1.90800 1.15067 1.86253 1.48963 1.19860 0.97609 0.95419 0.99914 1.21267 0.94311 0.96361 0.99464 1.17469 0.87206 0.94014 0.94492 1.91557 1.51916 1.93758 1.73628 1.21126 0.96150 0.99930 0.95594 1.20941 0.96873 0.95452 1.01593 1.17586 0.85749 0.93239 0.92073 1.91572 1.51532 1.94055 1.72741 1.22018 0.78786 1.00492 1.00478 1.22531 1.01936 0.99301 0.95299 1.20227 0.89684 0.90585 0.92738 0.92990 1.42466 1.19135 1.63957 1.10506 1.19164 0.93642 1.27138 0.97074 0.91314 1.24688 0.98510 1.01377 0.96007 1.69631 1.38172 1.47980 1.02244 0.86324 0.84362 0.79209 0.76589 1.21367 1.21800 1.21365 0.92777 0.93362 0.93114 0.91949 0.90430 0.90272 0.89379 0.82721 0.83262 0.83047 0.90866 0.89221 0.93284 0.90572 0.78105 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.68 37.15 0.36 -1.71 16 2 C -0.11 -1.72 5.19 -26.73 -0.14 -1.86 16 3 C -0.10 -1.65 2.15 -90.27 -0.19 -1.84 16 4 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 5 C 0.12 1.97 5.04 -3.49 -0.02 1.95 16 6 N -0.59 -9.46 2.97 -173.66 -0.52 -9.97 16 7 C 0.56 9.16 6.92 -12.39 -0.09 9.08 16 8 O -0.53 -10.33 16.29 5.31 0.09 -10.25 16 9 C -0.12 -1.67 4.89 -104.92 -0.51 -2.18 16 10 C -0.09 -1.11 7.40 -39.12 -0.29 -1.40 16 11 C 0.09 0.90 7.29 -39.49 -0.29 0.61 16 12 F -0.13 -1.43 17.26 2.25 0.04 -1.39 16 13 C -0.11 -0.88 10.01 -39.45 -0.39 -1.28 16 14 C -0.13 -1.12 10.01 -39.57 -0.40 -1.51 16 15 C 0.13 1.63 7.27 -38.97 -0.28 1.35 16 16 F -0.12 -1.68 16.65 2.25 0.04 -1.64 16 17 C 0.10 1.61 5.27 -3.71 -0.02 1.59 16 18 C -0.15 -2.41 5.78 -26.61 -0.15 -2.56 16 19 C 0.18 3.21 2.53 -67.89 -0.17 3.04 16 20 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 21 N -0.72 -15.96 3.72 -53.38 -0.20 -16.16 16 22 C -0.24 -6.07 9.93 -15.06 -0.15 -6.22 16 23 H 0.07 1.71 7.83 -52.49 -0.41 1.30 16 24 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 25 N -0.93 -26.52 13.06 55.49 0.72 -25.80 16 26 Si 0.90 21.44 29.55 -169.99 -5.02 16.41 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 29 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 30 H 0.05 0.73 6.70 -51.93 -0.35 0.38 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.41 7.70 -51.93 -0.40 1.01 16 35 H 0.08 1.45 6.63 -51.93 -0.34 1.10 16 36 H 0.09 1.48 5.76 -51.93 -0.30 1.18 16 37 H 0.16 1.79 7.36 -52.49 -0.39 1.41 16 38 H 0.15 0.78 8.06 -52.48 -0.42 0.35 16 39 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 40 H 0.07 0.98 4.73 -51.93 -0.25 0.73 16 41 H 0.09 1.60 7.74 -51.93 -0.40 1.20 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.38 9.16 5.93 -40.82 -0.24 8.91 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 367.41 15.07 5.54 5.54 Total: -1.00 -29.61 367.41 -8.16 -37.77 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.01 Total: 8.77 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -2.83 Total: -3.28 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.01 Total: -51.93 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 9 Polarization: -3.11 SS G_CDS: 0.08 Total: -3.03 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.61 -8.16 -37.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037863518.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.404 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds