Wall clock time and date at job start Tue Mar 31 2020 21:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47624 * 2 1 4 4 H 1.09005 * 109.51989 * 54.92322 * 3 2 1 5 5 C 1.53186 * 109.49857 * 294.84355 * 3 2 1 6 6 N 1.46927 * 108.77638 * 185.41333 * 5 3 2 7 7 C 1.34774 * 120.63023 * 233.62548 * 6 5 3 8 8 O 1.21579 * 119.99930 * 355.85080 * 7 6 5 9 9 C 1.47699 * 120.00084 * 175.84424 * 7 6 5 10 10 C 1.39688 * 120.15427 * 54.23397 * 9 7 6 11 11 C 1.37834 * 119.92265 * 179.76870 * 10 9 7 12 12 C 1.38451 * 120.24556 * 0.50571 * 11 10 9 13 13 C 1.38382 * 120.30894 * 359.74923 * 12 11 10 14 14 F 1.35108 * 119.95923 * 180.02562 * 13 12 11 15 15 C 1.38541 * 120.07359 * 359.97438 * 13 12 11 16 16 F 1.35101 * 120.11769 * 179.97438 * 15 13 12 17 17 C 1.46924 * 118.73996 * 53.60637 * 6 5 3 18 18 C 1.53197 * 108.76495 * 306.38404 * 17 6 5 19 19 C 1.53038 * 109.49646 * 174.99979 * 3 2 1 20 20 H 1.08996 * 109.45834 * 61.31475 * 19 3 2 21 21 N 1.46497 * 109.46430 * 301.33665 * 19 3 2 22 22 C 1.36933 * 119.99936 * 154.97218 * 21 19 3 23 23 H 1.07998 * 120.00539 * 0.02562 * 22 21 19 24 24 C 1.38818 * 119.99781 * 180.02562 * 22 21 19 25 25 N 1.31615 * 119.99997 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99839 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47322 * 179.97438 * 26 24 22 28 28 H 1.48498 * 109.47116 * 299.99585 * 26 24 22 29 29 H 1.48499 * 109.47426 * 59.99680 * 26 24 22 30 30 H 1.09006 * 109.46740 * 299.99790 * 1 2 3 31 31 H 1.08999 * 109.47381 * 59.99363 * 1 2 3 32 32 H 1.08997 * 109.47453 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46900 * 239.99768 * 2 1 3 34 34 H 1.09009 * 109.47263 * 120.00567 * 2 1 3 35 35 H 1.09001 * 109.58400 * 305.19678 * 5 3 2 36 36 H 1.08999 * 109.59098 * 65.62055 * 5 3 2 37 37 H 1.07998 * 120.03193 * 0.02562 * 10 9 7 38 38 H 1.07999 * 119.87944 * 180.25500 * 11 10 9 39 39 H 1.08001 * 119.84427 * 179.72101 * 12 11 10 40 40 H 1.08995 * 109.59048 * 66.17888 * 17 6 5 41 41 H 1.08999 * 109.58935 * 186.46467 * 17 6 5 42 42 H 1.09002 * 109.50725 * 294.70048 * 18 17 6 43 43 H 1.08998 * 109.48835 * 174.59906 * 18 17 6 44 44 H 0.96997 * 120.00036 * 334.98021 * 21 19 3 45 45 H 0.97003 * 119.99768 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6049 1.9827 0.8408 5 6 1.6386 2.1268 -1.3104 6 7 2.2453 3.4643 -1.3506 7 6 1.4859 4.5565 -1.5671 8 8 0.3001 4.4348 -1.8064 9 6 2.0942 5.9013 -1.5137 10 6 3.2091 6.1990 -2.3009 11 6 3.7701 7.4570 -2.2508 12 6 3.2390 8.4246 -1.4151 13 6 2.1380 8.1389 -0.6271 14 9 1.6252 9.0887 0.1856 15 6 1.5603 6.8805 -0.6713 16 9 0.4856 6.6004 0.0980 17 6 3.6954 3.5886 -1.1498 18 6 4.0736 2.8880 0.1590 19 6 3.5653 1.4448 0.1257 20 1 4.0008 0.9261 -0.7282 21 7 3.9542 0.7618 1.3620 22 6 5.1921 0.1855 1.4655 23 1 5.8818 0.2348 0.6359 24 6 5.5604 -0.4621 2.6368 25 7 4.7201 -0.5218 3.6480 26 14 7.2493 -1.2477 2.7782 27 1 7.3953 -1.8696 4.1188 28 1 7.4004 -2.2886 1.7300 29 1 8.2951 -0.2088 2.5985 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5140 0.8900 35 1 1.9965 1.5377 -2.1548 36 1 0.5533 2.2161 -1.3584 37 1 3.6285 5.4454 -2.9510 38 1 4.6296 7.6876 -2.8628 39 1 3.6865 9.4069 -1.3776 40 1 4.2210 3.1188 -1.9811 41 1 3.9676 4.6426 -1.0943 42 1 3.6190 3.4145 0.9982 43 1 5.1576 2.8894 0.2722 44 1 3.3349 0.7177 2.1072 45 1 4.9776 -0.9741 4.4666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037911981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:33 Heat of formation + Delta-G solvation = -87.752461 kcal Electronic energy + Delta-G solvation = -30045.809976 eV Core-core repulsion = 25699.433354 eV Total energy + Delta-G solvation = -4346.376622 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.72062 -48.78714 -40.63791 -38.82935 -37.70249 -34.85297 -33.83719 -31.87146 -31.60890 -30.79766 -29.56193 -28.64849 -25.70631 -24.12389 -23.96687 -23.07918 -22.65720 -20.89684 -20.31360 -19.43608 -18.16928 -17.80188 -17.38971 -17.14359 -16.77339 -16.36909 -15.91901 -15.32778 -15.20294 -15.03546 -14.89240 -14.56504 -14.24413 -14.05065 -13.78055 -13.50847 -13.33642 -13.18479 -12.99418 -12.85965 -12.52382 -12.39254 -12.21783 -11.98220 -11.77584 -11.64178 -11.32906 -10.95759 -10.88972 -10.74208 -10.41411 -10.26528 -10.19244 -10.03113 -9.76519 -9.64562 -9.41332 -9.12857 -8.91993 -8.59444 -7.00212 -5.80522 -3.09615 0.31500 0.52570 2.38515 2.74277 3.08542 3.40037 3.43114 3.44871 3.46239 3.98575 4.05658 4.31889 4.37063 4.54364 4.62617 4.94358 5.08106 5.16878 5.23668 5.27759 5.31886 5.40663 5.49343 5.49843 5.53742 5.57226 5.63702 5.64773 5.70135 5.84535 5.95982 6.07595 6.11527 6.25572 6.27209 6.31784 6.34564 6.42075 6.49914 6.63018 6.77926 6.92003 7.00937 7.31839 7.64550 7.99717 8.37380 9.48890 10.06008 10.40856 11.41746 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012704 B = 0.003276 C = 0.002913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.482155 B = 8545.723627 C = 9610.457835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.070 0.930 5 C 0.120 3.880 6 N -0.594 5.594 7 C 0.560 3.440 8 O -0.529 6.529 9 C -0.128 4.128 10 C -0.072 4.072 11 C -0.104 4.104 12 C -0.109 4.109 13 C 0.064 3.936 14 F -0.125 7.125 15 C 0.113 3.887 16 F -0.113 7.113 17 C 0.097 3.903 18 C -0.152 4.152 19 C 0.184 3.816 20 H 0.049 0.951 21 N -0.720 5.720 22 C -0.241 4.241 23 H 0.069 0.931 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.292 1.292 28 H -0.286 1.286 29 H -0.287 1.287 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.148 0.852 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.384 0.616 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.802 15.250 -13.943 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.089 0.911 5 C -0.002 4.002 6 N -0.325 5.325 7 C 0.346 3.654 8 O -0.406 6.406 9 C -0.132 4.132 10 C -0.090 4.090 11 C -0.122 4.122 12 C -0.128 4.128 13 C 0.044 3.956 14 F -0.103 7.103 15 C 0.092 3.908 16 F -0.091 7.091 17 C -0.026 4.026 18 C -0.193 4.193 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.372 4.372 23 H 0.087 0.913 24 C -0.207 4.207 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.213 1.213 29 H -0.213 1.213 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.168 0.832 40 H 0.091 0.909 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.096 0.904 44 H 0.218 0.782 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -3.328 15.082 -13.995 20.842 hybrid contribution 0.601 -0.231 0.852 1.068 sum -2.727 14.851 -13.143 20.018 Atomic orbital electron populations 1.21850 0.96774 1.01101 1.01346 1.21446 0.94401 0.95518 1.03549 1.21801 0.97778 0.96390 0.96596 0.91131 1.21834 0.99514 0.80749 0.98136 1.48080 1.08749 1.06502 1.69212 1.17903 0.86121 0.83637 0.77723 1.90818 1.14967 1.86272 1.48517 1.19926 0.98498 0.94734 1.00076 1.21319 0.92699 0.97667 0.97337 1.21037 1.00538 0.92012 0.98645 1.21260 0.94285 1.01749 0.95487 1.17538 0.96960 0.85352 0.95785 1.91559 1.86217 1.62109 1.70465 1.17585 0.87028 0.92404 0.93760 1.91600 1.51473 1.93787 1.72252 1.22158 0.79061 1.01709 0.99669 1.22704 1.02346 0.99323 0.94969 1.20183 0.90701 0.90471 0.91315 0.93321 1.42397 1.16490 1.64421 1.12681 1.19158 0.91812 1.27578 0.98640 0.91280 1.24724 0.98093 1.01453 0.96414 1.69647 1.35286 1.48228 1.04744 0.86309 0.84141 0.79178 0.76768 1.21751 1.21290 1.21337 0.92957 0.93217 0.93104 0.92389 0.89698 0.91199 0.88978 0.83450 0.83407 0.83188 0.90945 0.90014 0.92172 0.90374 0.78166 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 37.16 0.36 -1.76 16 2 C -0.11 -1.76 5.31 -26.73 -0.14 -1.90 16 3 C -0.11 -1.69 1.92 -90.51 -0.17 -1.87 16 4 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 5 C 0.12 1.69 5.32 -3.71 -0.02 1.67 16 6 N -0.59 -8.14 2.97 -173.94 -0.52 -8.66 16 7 C 0.56 8.31 6.91 -12.40 -0.09 8.23 16 8 O -0.53 -9.59 16.31 5.30 0.09 -9.51 16 9 C -0.13 -1.56 4.89 -104.92 -0.51 -2.07 16 10 C -0.07 -0.59 7.42 -39.19 -0.29 -0.88 16 11 C -0.10 -0.64 10.02 -39.65 -0.40 -1.04 16 12 C -0.11 -0.79 10.01 -39.45 -0.40 -1.19 16 13 C 0.06 0.69 7.30 -39.42 -0.29 0.40 16 14 F -0.13 -1.47 17.18 2.25 0.04 -1.43 16 15 C 0.11 1.49 7.28 -38.90 -0.28 1.20 16 16 F -0.11 -1.78 16.58 2.25 0.04 -1.75 16 17 C 0.10 1.17 5.53 -3.71 -0.02 1.15 16 18 C -0.15 -2.43 5.66 -26.61 -0.15 -2.58 16 19 C 0.18 3.33 2.19 -67.89 -0.15 3.18 16 20 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 21 N -0.72 -16.78 4.33 -53.39 -0.23 -17.01 16 22 C -0.24 -6.28 9.93 -15.06 -0.15 -6.43 16 23 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 24 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 25 N -0.93 -27.26 13.06 55.49 0.72 -26.53 16 26 Si 0.90 21.62 29.55 -169.99 -5.02 16.60 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 29 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.63 6.70 -51.93 -0.35 0.28 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.08 1.62 7.22 -51.92 -0.37 1.24 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.09 1.38 5.75 -51.93 -0.30 1.08 16 37 H 0.15 0.92 7.37 -52.49 -0.39 0.53 16 38 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 39 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.08 0.84 4.72 -51.93 -0.25 0.59 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 43 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 44 H 0.38 9.78 7.51 -40.82 -0.31 9.47 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -31.70 370.92 -8.24 -39.94 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.15 Total: 7.02 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -2.79 Total: -4.27 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -0.02 Total: -52.20 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.08 Total: -3.18 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.70 -8.24 -39.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037911981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.810 kcal (2) G-P(sol) polarization free energy of solvation -31.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds