Wall clock time and date at job start Tue Mar 31 2020 21:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46833 * 2 1 4 4 H 1.08998 * 109.49919 * 305.06282 * 3 2 1 5 5 C 1.53191 * 109.52564 * 65.14562 * 3 2 1 6 6 N 1.46924 * 108.77636 * 174.60093 * 5 3 2 7 7 C 1.34773 * 120.63110 * 126.41171 * 6 5 3 8 8 O 1.21564 * 119.99899 * 354.19140 * 7 6 5 9 9 C 1.47701 * 119.99850 * 174.18699 * 7 6 5 10 10 C 1.39682 * 120.15383 * 306.18944 * 9 7 6 11 11 C 1.37852 * 119.92155 * 179.74258 * 10 9 7 12 12 C 1.38448 * 120.24060 * 0.51707 * 11 10 9 13 13 C 1.38384 * 120.31482 * 359.76140 * 12 11 10 14 14 F 1.35094 * 119.96468 * 179.97438 * 13 12 11 15 15 C 1.38542 * 120.06991 * 359.97438 * 13 12 11 16 16 F 1.35104 * 120.11753 * 180.02562 * 15 13 12 17 17 C 1.46929 * 118.73874 * 306.38973 * 6 5 3 18 18 C 1.53190 * 108.77367 * 53.60899 * 17 6 5 19 19 C 1.53038 * 109.49555 * 184.99999 * 3 2 1 20 20 H 1.08998 * 109.46100 * 298.65951 * 19 3 2 21 21 N 1.46504 * 109.46380 * 58.63051 * 19 3 2 22 22 C 1.36933 * 120.00147 * 205.00200 * 21 19 3 23 23 H 1.08003 * 120.00001 * 0.02562 * 22 21 19 24 24 C 1.38810 * 119.99957 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00053 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99953 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47070 * 90.00246 * 26 24 22 28 28 H 1.48494 * 109.47216 * 330.00334 * 26 24 22 29 29 H 1.48506 * 109.47046 * 210.00249 * 26 24 22 30 30 H 1.09011 * 109.46969 * 59.99934 * 1 2 3 31 31 H 1.09001 * 109.47207 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47267 * 300.00118 * 1 2 3 33 33 H 1.09002 * 109.46809 * 239.99997 * 2 1 3 34 34 H 1.08997 * 109.46886 * 119.99972 * 2 1 3 35 35 H 1.09004 * 109.58441 * 294.38750 * 5 3 2 36 36 H 1.09001 * 109.58405 * 54.66560 * 5 3 2 37 37 H 1.07996 * 120.03927 * 0.02562 * 10 9 7 38 38 H 1.07998 * 119.87522 * 180.23862 * 11 10 9 39 39 H 1.07997 * 119.83970 * 179.74614 * 12 11 10 40 40 H 1.09001 * 109.58760 * 173.39760 * 17 6 5 41 41 H 1.09003 * 109.58735 * 293.68214 * 17 6 5 42 42 H 1.08998 * 109.49837 * 185.41524 * 18 17 6 43 43 H 1.09000 * 109.49985 * 65.32076 * 18 17 6 44 44 H 0.96997 * 119.99673 * 25.00204 * 21 19 3 45 45 H 0.97000 * 119.99913 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 -0.8410 5 6 1.6385 2.1275 1.3101 6 7 2.2449 3.4652 1.3495 7 6 1.4856 4.5573 1.5663 8 8 0.2758 4.4543 1.6262 9 6 2.1233 5.8793 1.7312 10 6 3.1282 6.0596 2.6845 11 6 3.7238 7.2941 2.8307 12 6 3.3223 8.3597 2.0432 13 6 2.3237 8.1936 1.0997 14 9 1.9371 9.2384 0.3354 15 6 1.7200 6.9572 0.9381 16 9 0.7453 6.7939 0.0169 17 6 3.6951 3.5896 1.1487 18 6 4.0736 2.8882 -0.1596 19 6 3.5652 1.4451 -0.1257 20 1 4.0008 0.9268 0.7285 21 7 3.9543 0.7614 -1.3617 22 6 5.1924 0.1857 -1.4651 23 1 5.8820 0.2353 -0.6353 24 6 5.5608 -0.4625 -2.6359 25 7 4.7202 -0.5233 -3.6469 26 14 7.2501 -1.2473 -2.7772 27 1 7.1819 -2.6559 -2.3123 28 1 8.2170 -0.4952 -1.9379 29 1 7.6942 -1.2145 -4.1940 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.5531 2.2168 1.3580 36 1 1.9942 1.5376 2.1548 37 1 3.4413 5.2316 3.3031 38 1 4.5034 7.4317 3.5653 39 1 3.7906 9.3251 2.1660 40 1 3.9668 4.6436 1.0901 41 1 4.2208 3.1224 1.9815 42 1 5.1577 2.8894 -0.2727 43 1 3.6192 3.4144 -0.9992 44 1 3.3348 0.7166 -2.1067 45 1 3.8432 -0.1155 -3.5737 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037911985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:37 Heat of formation + Delta-G solvation = -89.321882 kcal Electronic energy + Delta-G solvation = -30043.711052 eV Core-core repulsion = 25697.266375 eV Total energy + Delta-G solvation = -4346.444678 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.76052 -48.82651 -40.66350 -38.89472 -37.76711 -34.98686 -34.03513 -31.98322 -31.64486 -30.81486 -29.49184 -28.59251 -25.61811 -24.01661 -23.96989 -23.13394 -22.77522 -21.03007 -20.37010 -19.50893 -18.22593 -17.79519 -17.43737 -17.31725 -16.86909 -16.44097 -15.99652 -15.33361 -15.24691 -15.08921 -14.99026 -14.59233 -14.35292 -14.09605 -13.67564 -13.62466 -13.51444 -13.26072 -13.16873 -12.97163 -12.58954 -12.45044 -12.25638 -12.02879 -11.88117 -11.72534 -11.41445 -10.97600 -10.76322 -10.63980 -10.37768 -10.29212 -10.09796 -10.02317 -9.90764 -9.46224 -9.21129 -9.17130 -8.93625 -8.64440 -7.07176 -6.13080 -3.13660 0.26943 0.48963 2.34580 2.70032 3.03581 3.38861 3.48458 3.52913 3.66969 3.94505 4.01902 4.28406 4.33725 4.59031 4.62626 4.87907 5.02037 5.08738 5.16888 5.21444 5.27460 5.34201 5.43421 5.45874 5.50221 5.53819 5.56312 5.61492 5.66627 5.77232 5.88627 5.99785 6.03548 6.13319 6.21155 6.24112 6.25874 6.33476 6.41956 6.54125 6.69878 6.80382 6.92746 7.26372 7.76618 7.94875 8.72142 9.18496 10.05018 10.20368 11.35012 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013015 B = 0.003217 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.868429 B = 8700.584791 C = 9754.916073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.107 4.107 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.595 5.595 7 C 0.560 3.440 8 O -0.527 6.527 9 C -0.129 4.129 10 C -0.069 4.069 11 C -0.104 4.104 12 C -0.109 4.109 13 C 0.064 3.936 14 F -0.125 7.125 15 C 0.113 3.887 16 F -0.113 7.113 17 C 0.103 3.897 18 C -0.151 4.151 19 C 0.190 3.810 20 H 0.050 0.950 21 N -0.731 5.731 22 C -0.331 4.331 23 H 0.064 0.936 24 C -0.043 4.043 25 N -0.943 5.943 26 Si 1.081 2.919 27 H -0.296 1.296 28 H -0.295 1.295 29 H -0.288 1.288 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.151 0.849 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.367 0.633 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 15.060 15.839 22.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.127 4.127 4 H 0.088 0.912 5 C -0.002 4.002 6 N -0.327 5.327 7 C 0.347 3.653 8 O -0.404 6.404 9 C -0.133 4.133 10 C -0.088 4.088 11 C -0.122 4.122 12 C -0.128 4.128 13 C 0.044 3.956 14 F -0.103 7.103 15 C 0.091 3.909 16 F -0.091 7.091 17 C -0.020 4.020 18 C -0.193 4.193 19 C 0.079 3.921 20 H 0.068 0.932 21 N -0.373 5.373 22 C -0.462 4.462 23 H 0.082 0.918 24 C -0.241 4.241 25 N -0.588 5.588 26 Si 0.912 3.088 27 H -0.224 1.224 28 H -0.222 1.222 29 H -0.215 1.215 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.165 0.835 38 H 0.166 0.834 39 H 0.168 0.832 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.097 0.903 43 H 0.077 0.923 44 H 0.200 0.800 45 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.162 14.136 14.946 20.685 hybrid contribution -1.303 1.152 0.388 1.782 sum -3.465 15.288 15.334 21.929 Atomic orbital electron populations 1.21853 0.96610 1.01172 1.01437 1.21433 0.94523 0.95501 1.03374 1.21813 0.97733 0.96348 0.96795 0.91229 1.21808 0.99618 0.80792 0.98022 1.48073 1.08794 1.06481 1.69365 1.17917 0.86546 0.83436 0.77447 1.90817 1.13297 1.85629 1.50670 1.19931 0.99967 0.93869 0.99549 1.21304 0.92823 0.98637 0.96047 1.21044 1.00240 0.91447 0.99467 1.21267 0.95588 1.01478 0.94423 1.17541 0.99169 0.83315 0.95612 1.91556 1.90150 1.54978 1.73643 1.17616 0.89746 0.92564 0.90943 1.91603 1.58890 1.95866 1.62740 1.22026 0.79006 1.01487 0.99498 1.22675 1.02397 0.99189 0.94999 1.20115 0.90588 0.90405 0.90979 0.93212 1.42418 1.16520 1.65609 1.12744 1.20029 0.92422 1.32141 1.01619 0.91773 1.25722 1.05791 1.00203 0.92391 1.70848 1.08340 1.47507 1.32132 0.83221 0.74255 0.75717 0.75621 1.22356 1.22204 1.21453 0.92968 0.93025 0.93084 0.90184 0.92268 0.88894 0.91147 0.83531 0.83391 0.83162 0.90309 0.90996 0.90304 0.92320 0.79952 0.93308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.67 37.16 0.36 -1.74 16 2 C -0.11 -1.74 5.31 -26.73 -0.14 -1.88 16 3 C -0.11 -1.72 1.92 -90.50 -0.17 -1.89 16 4 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 5 C 0.12 1.68 5.34 -3.71 -0.02 1.66 16 6 N -0.60 -8.15 2.97 -173.93 -0.52 -8.66 16 7 C 0.56 8.28 6.89 -12.40 -0.09 8.20 16 8 O -0.53 -9.57 16.26 5.31 0.09 -9.48 16 9 C -0.13 -1.55 4.61 -104.92 -0.48 -2.03 16 10 C -0.07 -0.56 7.78 -39.18 -0.30 -0.87 16 11 C -0.10 -0.62 10.03 -39.65 -0.40 -1.02 16 12 C -0.11 -0.77 10.01 -39.45 -0.40 -1.16 16 13 C 0.06 0.68 7.30 -39.42 -0.29 0.39 16 14 F -0.12 -1.45 17.18 2.25 0.04 -1.41 16 15 C 0.11 1.46 7.28 -38.90 -0.28 1.17 16 16 F -0.11 -1.77 16.56 2.25 0.04 -1.74 16 17 C 0.10 1.26 5.56 -3.71 -0.02 1.24 16 18 C -0.15 -2.47 5.66 -26.61 -0.15 -2.63 16 19 C 0.19 3.48 2.19 -67.89 -0.15 3.33 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.73 -17.16 4.33 -53.38 -0.23 -17.39 16 22 C -0.33 -8.80 9.93 -15.06 -0.15 -8.95 16 23 H 0.06 1.68 7.83 -52.48 -0.41 1.26 16 24 C -0.04 -1.21 5.50 -17.43 -0.10 -1.31 16 25 N -0.94 -28.49 13.70 55.49 0.76 -27.73 16 26 Si 1.08 25.24 29.92 -169.99 -5.09 20.15 16 27 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.30 -6.47 7.11 56.52 0.40 -6.07 16 29 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 30 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 33 H 0.08 1.51 7.21 -51.93 -0.37 1.14 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.37 5.72 -51.93 -0.30 1.08 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.15 0.91 7.75 -52.49 -0.41 0.50 16 38 H 0.15 0.40 8.06 -52.49 -0.42 -0.02 16 39 H 0.15 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.08 0.84 5.38 -51.93 -0.28 0.56 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.37 9.14 6.34 -40.82 -0.26 8.88 16 45 H 0.26 7.63 6.77 -40.82 -0.28 7.35 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -32.86 370.25 -8.21 -41.06 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.10 Total: 7.09 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -2.78 Total: -7.48 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.01 Total: -53.78 kcal Atomic # 8 Polarization: -9.57 SS G_CDS: 0.09 Total: -9.48 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.08 Total: -3.14 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.09 Total: 20.15 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.86 -8.21 -41.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037911985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.259 kcal (2) G-P(sol) polarization free energy of solvation -32.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds