Wall clock time and date at job start Tue Mar 31 2020 21:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.08992 * 109.49814 * 55.06110 * 3 2 1 5 5 C 1.53195 * 109.49293 * 294.99547 * 3 2 1 6 6 N 1.46930 * 108.77016 * 185.41351 * 5 3 2 7 7 C 1.34778 * 120.62573 * 233.58968 * 6 5 3 8 8 O 1.21586 * 120.00501 * 0.02562 * 7 6 5 9 9 C 1.47553 * 119.99506 * 180.02562 * 7 6 5 10 10 C 1.39893 * 120.18873 * 89.72616 * 9 7 6 11 11 F 1.35100 * 120.10018 * 359.97438 * 10 9 7 12 12 C 1.38228 * 119.80345 * 179.72047 * 10 9 7 13 13 C 1.38307 * 120.18963 * 0.55375 * 12 10 9 14 14 C 1.38309 * 120.38006 * 359.71675 * 13 12 10 15 15 C 1.38220 * 120.19013 * 0.02562 * 14 13 12 16 16 F 1.35099 * 120.09100 * 180.02562 * 15 14 13 17 17 C 1.46923 * 118.73962 * 53.61503 * 6 5 3 18 18 C 1.53192 * 108.77296 * 306.38674 * 17 6 5 19 19 C 1.53035 * 109.49630 * 175.16112 * 3 2 1 20 20 H 1.09006 * 109.46458 * 61.29583 * 19 3 2 21 21 N 1.46505 * 109.46240 * 301.33331 * 19 3 2 22 22 C 1.36936 * 119.99930 * 154.99913 * 21 19 3 23 23 H 1.08001 * 120.00185 * 0.02562 * 22 21 19 24 24 C 1.38812 * 119.99978 * 179.97438 * 22 21 19 25 25 N 1.31621 * 119.99836 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00357 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47038 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46982 * 120.00142 * 26 24 22 29 29 H 1.48497 * 109.47387 * 240.00865 * 26 24 22 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 1.08998 * 109.58982 * 305.20187 * 5 3 2 36 36 H 1.09001 * 109.58078 * 65.49051 * 5 3 2 37 37 H 1.08004 * 119.90649 * 180.27139 * 12 10 9 38 38 H 1.07991 * 119.80729 * 179.74532 * 13 12 10 39 39 H 1.08005 * 119.89841 * 180.02562 * 14 13 12 40 40 H 1.08994 * 109.58603 * 66.17417 * 17 6 5 41 41 H 1.09007 * 109.58598 * 186.60560 * 17 6 5 42 42 H 1.09007 * 109.49692 * 174.59248 * 18 17 6 43 43 H 1.08999 * 109.49918 * 294.68157 * 18 17 6 44 44 H 0.96999 * 119.99827 * 335.00121 * 21 19 3 45 45 H 0.96996 * 120.00012 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6065 1.9817 0.8422 5 6 1.6351 2.1279 -1.3089 6 7 2.2416 3.4656 -1.3494 7 6 1.4816 4.5578 -1.5639 8 8 0.2821 4.4418 -1.7255 9 6 2.1053 5.8945 -1.6024 10 6 2.5795 6.4149 -2.8112 11 9 2.4685 5.6947 -3.9489 12 6 3.1572 7.6704 -2.8392 13 6 3.2774 8.4068 -1.6746 14 6 2.8163 7.8974 -0.4743 15 6 2.2312 6.6460 -0.4291 16 9 1.7811 6.1506 0.7444 17 6 3.6922 3.5898 -1.1523 18 6 4.0740 2.8880 0.1547 19 6 3.5655 1.4449 0.1217 20 1 3.9989 0.9267 -0.7338 21 7 3.9578 0.7608 1.3564 22 6 5.1961 0.1850 1.4563 23 1 5.8838 0.2355 0.6251 24 6 5.5680 -0.4627 2.6264 25 7 4.7301 -0.5238 3.6396 26 14 7.2575 -1.2476 2.7631 27 1 8.0036 -1.0404 1.4959 28 1 8.0043 -0.6230 3.8844 29 1 7.1081 -2.7030 3.0176 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 1.9908 1.5396 -2.1547 36 1 0.5495 2.2150 -1.3550 37 1 3.5199 8.0756 -3.7723 38 1 3.7335 9.3852 -1.7029 39 1 2.9138 8.4793 0.4304 40 1 4.2156 3.1207 -1.9854 41 1 3.9641 4.6438 -1.0941 42 1 5.1585 2.8892 0.2650 43 1 3.6219 3.4139 0.9956 44 1 3.3402 0.7158 2.1031 45 1 4.9898 -0.9767 4.4571 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037962153.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:50 Heat of formation + Delta-G solvation = -90.930636 kcal Electronic energy + Delta-G solvation = -30406.613336 eV Core-core repulsion = 26060.098898 eV Total energy + Delta-G solvation = -4346.514439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.35381 -49.26646 -40.40133 -38.83520 -37.69418 -34.78359 -33.81004 -31.87889 -31.60017 -30.76754 -29.54502 -28.64753 -25.60526 -24.09506 -23.76007 -23.21629 -22.65798 -20.86696 -20.22822 -19.36074 -18.45702 -17.62526 -17.54557 -17.07937 -16.61568 -15.97645 -15.95183 -15.58574 -15.50880 -14.98567 -14.76933 -14.71519 -14.18347 -14.00299 -13.74556 -13.34742 -13.25645 -13.15001 -13.06674 -12.73472 -12.40417 -12.32729 -12.21876 -12.06536 -11.85922 -11.62981 -11.30257 -10.95765 -10.87178 -10.72868 -10.39827 -10.20300 -10.14594 -10.04148 -9.74514 -9.61923 -9.38347 -9.17942 -8.91989 -8.56375 -6.98076 -5.79057 -3.07857 0.39726 0.55654 2.37171 2.79512 3.00625 3.40806 3.41158 3.46588 3.48829 3.97815 4.08565 4.33087 4.42835 4.56057 4.67366 4.97404 5.15398 5.20240 5.26599 5.32102 5.36040 5.42453 5.47662 5.54494 5.56184 5.59450 5.66714 5.67551 5.69907 5.87124 5.99279 6.10737 6.14595 6.26258 6.29731 6.34637 6.37479 6.44289 6.52648 6.65967 6.80540 6.94319 7.03802 7.34802 7.67677 8.01114 8.38945 9.50651 10.07763 10.42951 11.43405 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013181 B = 0.003491 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.718172 B = 8019.833363 C = 8969.537991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.105 4.105 4 H 0.071 0.929 5 C 0.119 3.881 6 N -0.591 5.591 7 C 0.565 3.435 8 O -0.529 6.529 9 C -0.190 4.190 10 C 0.159 3.841 11 F -0.122 7.122 12 C -0.166 4.166 13 C -0.048 4.048 14 C -0.164 4.164 15 C 0.164 3.836 16 F -0.117 7.117 17 C 0.107 3.893 18 C -0.151 4.151 19 C 0.184 3.816 20 H 0.049 0.951 21 N -0.719 5.719 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.012 4.012 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.051 0.949 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.149 0.851 38 H 0.149 0.851 39 H 0.150 0.850 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.384 0.616 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.836 17.202 -12.738 21.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.089 0.911 5 C -0.003 4.003 6 N -0.322 5.322 7 C 0.350 3.650 8 O -0.406 6.406 9 C -0.195 4.195 10 C 0.139 3.861 11 F -0.100 7.100 12 C -0.185 4.185 13 C -0.066 4.066 14 C -0.183 4.183 15 C 0.143 3.857 16 F -0.095 7.095 17 C -0.016 4.016 18 C -0.192 4.192 19 C 0.073 3.927 20 H 0.067 0.933 21 N -0.360 5.360 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.208 4.208 25 N -0.579 5.579 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.219 1.219 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.168 0.832 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.080 0.920 44 H 0.218 0.782 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.316 16.962 -12.834 21.704 hybrid contribution 0.797 -0.598 0.506 1.118 sum -3.518 16.365 -12.328 20.789 Atomic orbital electron populations 1.21850 0.96777 1.01079 1.01342 1.21447 0.94403 0.95519 1.03546 1.21792 0.97721 0.96369 0.96588 0.91056 1.21842 0.99536 0.80759 0.98204 1.48124 1.08685 1.06534 1.68861 1.17758 0.86403 0.83429 0.77381 1.90800 1.13979 1.85998 1.49834 1.19960 1.07879 0.98340 0.93299 1.17307 0.97642 0.90365 0.80778 1.91575 1.93552 1.77318 1.47530 1.21169 1.03193 0.93166 1.00957 1.20988 0.95551 0.99696 0.90408 1.21216 1.01924 0.94546 1.00649 1.17349 0.95823 0.92313 0.80167 1.91615 1.86188 1.87477 1.44230 1.21902 0.79017 1.01021 0.99704 1.22693 1.02306 0.99329 0.94855 1.20180 0.90718 0.90420 0.91340 0.93316 1.42411 1.16522 1.64348 1.12689 1.19256 0.91767 1.27286 0.98615 0.91183 1.24721 0.98111 1.01532 0.96413 1.69669 1.35195 1.48337 1.04716 0.86165 0.84052 0.78912 0.77333 1.20604 1.21953 1.21911 0.93107 0.93227 0.92952 0.89688 0.92389 0.91214 0.88948 0.83348 0.83374 0.83232 0.91026 0.91068 0.90378 0.92040 0.78157 0.93567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.67 37.16 0.36 -1.81 16 2 C -0.11 -1.82 5.31 -26.73 -0.14 -1.96 16 3 C -0.10 -1.76 1.93 -90.50 -0.17 -1.93 16 4 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 5 C 0.12 1.81 5.32 -3.71 -0.02 1.79 16 6 N -0.59 -9.06 2.97 -173.99 -0.52 -9.58 16 7 C 0.56 9.19 6.43 -12.46 -0.08 9.11 16 8 O -0.53 -10.19 16.52 5.29 0.09 -10.10 16 9 C -0.19 -2.51 3.64 -104.86 -0.38 -2.90 16 10 C 0.16 1.77 7.29 -38.97 -0.28 1.48 16 11 F -0.12 -1.50 16.83 2.25 0.04 -1.46 16 12 C -0.17 -1.23 10.01 -39.56 -0.40 -1.63 16 13 C -0.05 -0.29 10.03 -39.53 -0.40 -0.69 16 14 C -0.16 -1.33 10.01 -39.56 -0.40 -1.73 16 15 C 0.16 1.96 7.14 -38.97 -0.28 1.68 16 16 F -0.12 -1.67 16.83 2.25 0.04 -1.63 16 17 C 0.11 1.50 6.34 -3.71 -0.02 1.47 16 18 C -0.15 -2.56 5.66 -26.61 -0.15 -2.71 16 19 C 0.18 3.47 2.19 -67.89 -0.15 3.33 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.72 -17.12 4.33 -53.38 -0.23 -17.35 16 22 C -0.24 -6.31 9.93 -15.06 -0.15 -6.46 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -27.48 13.06 55.49 0.72 -26.76 16 26 Si 0.90 21.89 29.55 -169.99 -5.02 16.87 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.65 6.69 -51.93 -0.35 0.31 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 1.65 7.22 -51.93 -0.37 1.28 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 1.47 5.72 -51.93 -0.30 1.17 16 37 H 0.15 0.72 8.06 -52.48 -0.42 0.29 16 38 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 39 H 0.15 0.87 8.06 -52.48 -0.42 0.45 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.90 6.22 -51.93 -0.32 0.58 16 42 H 0.08 1.39 8.14 -51.92 -0.42 0.96 16 43 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.38 9.92 7.51 -40.82 -0.31 9.62 16 45 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 374.71 15.07 5.65 5.65 Total: -1.00 -31.97 374.71 -8.26 -40.23 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.27 Total: 7.52 kcal Atomic # 6 Polarization: -0.62 SS G_CDS: -2.76 Total: -3.38 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: -0.02 Total: -53.69 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.08 Total: -3.09 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.97 -8.26 -40.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037962153.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.704 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds