Wall clock time and date at job start Tue Mar 31 2020 21:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 H 1.09004 * 109.49591 * 304.99515 * 3 2 1 5 5 C 1.53188 * 109.49955 * 65.06231 * 3 2 1 6 6 N 1.46932 * 108.77143 * 174.55259 * 5 3 2 7 7 C 1.34779 * 120.59884 * 126.42572 * 6 5 3 8 8 O 1.21580 * 120.00629 * 0.02562 * 7 6 5 9 9 C 1.47551 * 119.99533 * 180.02562 * 7 6 5 10 10 C 1.39895 * 120.19346 * 89.71966 * 9 7 6 11 11 F 1.35106 * 120.09475 * 359.97438 * 10 9 7 12 12 C 1.38224 * 119.80647 * 179.71882 * 10 9 7 13 13 C 1.38302 * 120.18933 * 0.55757 * 12 10 9 14 14 C 1.38307 * 120.38181 * 359.71774 * 13 12 10 15 15 C 1.38214 * 120.19336 * 0.02562 * 14 13 12 16 16 F 1.35098 * 120.09997 * 180.02562 * 15 14 13 17 17 C 1.46919 * 118.76638 * 306.44394 * 6 5 3 18 18 C 1.53194 * 108.77515 * 53.59094 * 17 6 5 19 19 C 1.53038 * 109.49791 * 184.93493 * 3 2 1 20 20 H 1.08998 * 109.45979 * 298.70110 * 19 3 2 21 21 N 1.46507 * 109.46142 * 58.67178 * 19 3 2 22 22 C 1.36939 * 119.99852 * 204.99969 * 21 19 3 23 23 H 1.07992 * 120.00107 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99575 * 180.02562 * 22 21 19 25 25 N 1.31617 * 119.99865 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 120.00000 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.47137 * 90.00212 * 26 24 22 28 28 H 1.48498 * 109.47174 * 210.00071 * 26 24 22 29 29 H 1.48502 * 109.47401 * 330.00217 * 26 24 22 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 35 35 H 1.09001 * 109.58810 * 294.37827 * 5 3 2 36 36 H 1.08998 * 109.58605 * 54.80070 * 5 3 2 37 37 H 1.07999 * 119.90374 * 180.27847 * 12 10 9 38 38 H 1.07991 * 119.80681 * 179.74337 * 13 12 10 39 39 H 1.08003 * 119.90079 * 180.02562 * 14 13 12 40 40 H 1.09000 * 109.59170 * 293.79931 * 17 6 5 41 41 H 1.08998 * 109.70551 * 173.44304 * 17 6 5 42 42 H 1.08996 * 109.49677 * 185.41519 * 18 17 6 43 43 H 1.09003 * 109.50047 * 65.31503 * 18 17 6 44 44 H 0.97003 * 119.99428 * 25.00503 * 21 19 3 45 45 H 0.96998 * 120.00138 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6057 1.9820 -0.8418 5 6 1.6364 2.1276 1.3094 6 7 2.2437 3.4649 1.3500 7 6 1.4840 4.5571 1.5658 8 8 0.2848 4.4410 1.7294 9 6 2.1076 5.8938 1.6034 10 6 2.2367 6.6433 0.4292 11 9 1.7908 6.1452 -0.7448 12 6 2.8169 7.8970 0.4747 13 6 3.2797 8.4061 1.6744 14 6 3.1613 7.6695 2.8390 15 6 2.5790 6.4163 2.8127 16 9 2.4638 5.6987 3.9515 17 6 3.6940 3.5893 1.1507 18 6 4.0738 2.8881 -0.1573 19 6 3.5653 1.4451 -0.1241 20 1 4.0000 0.9264 0.7304 21 7 3.9556 0.7618 -1.3599 22 6 5.1939 0.1860 -1.4622 23 1 5.8825 0.2353 -0.6317 24 6 5.5639 -0.4610 -2.6333 25 7 6.7538 -1.0148 -2.7315 26 14 4.3724 -0.5467 -4.0694 27 1 4.5733 0.6318 -4.9504 28 1 4.6179 -1.7904 -4.8427 29 1 2.9786 -0.5497 -3.5568 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 0.5511 2.2169 1.3557 36 1 1.9930 1.5391 2.1547 37 1 2.9133 8.4788 -0.4301 38 1 3.7358 9.3846 1.7021 39 1 3.5250 8.0748 3.7717 40 1 4.2188 3.1198 1.9828 41 1 3.9681 4.6427 1.0936 42 1 5.1580 2.8893 -0.2691 43 1 3.6203 3.4144 -0.9972 44 1 3.3369 0.7173 -2.1056 45 1 7.0122 -1.4672 -3.5497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037962157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:24:55 Heat of formation + Delta-G solvation = -86.932311 kcal Electronic energy + Delta-G solvation = -30490.249695 eV Core-core repulsion = 26143.908637 eV Total energy + Delta-G solvation = -4346.341058 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.38180 -49.31705 -40.47009 -38.89702 -37.80165 -34.91100 -33.93193 -31.92993 -31.67112 -30.80139 -29.94600 -28.89455 -25.74442 -24.13606 -23.83406 -23.25204 -22.40887 -20.87939 -20.33664 -19.54447 -18.51089 -17.76914 -17.66305 -17.35404 -16.66740 -16.01339 -15.99337 -15.62871 -15.57168 -15.05359 -14.77139 -14.75079 -14.37643 -14.14600 -13.79411 -13.45178 -13.38448 -13.17629 -12.93223 -12.76315 -12.47266 -12.43308 -12.28884 -12.22779 -11.99454 -11.84916 -11.43828 -11.05748 -11.03644 -10.81847 -10.47112 -10.34576 -10.23227 -10.08907 -9.78398 -9.60166 -9.42445 -9.21317 -8.95052 -8.64176 -7.30182 -5.80376 -3.15833 0.36232 0.52413 2.31550 2.74870 2.95796 3.35267 3.37353 3.38945 3.43877 3.94303 4.03950 4.29716 4.39265 4.56367 4.64389 4.88640 5.00117 5.08440 5.16705 5.21753 5.31379 5.32254 5.43600 5.45938 5.50375 5.52350 5.56727 5.57959 5.67093 5.75871 5.89344 5.97960 6.01088 6.06748 6.20459 6.24139 6.24926 6.31920 6.40549 6.51959 6.68681 6.76462 6.91460 7.27884 7.94947 7.95288 8.38749 9.16923 9.89787 10.09803 11.37900 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013889 B = 0.003618 C = 0.003298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.466650 B = 7736.768372 C = 8486.859995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.109 4.109 4 H 0.070 0.930 5 C 0.120 3.880 6 N -0.592 5.592 7 C 0.565 3.435 8 O -0.529 6.529 9 C -0.190 4.190 10 C 0.163 3.837 11 F -0.118 7.118 12 C -0.164 4.164 13 C -0.048 4.048 14 C -0.165 4.165 15 C 0.160 3.840 16 F -0.121 7.121 17 C 0.107 3.893 18 C -0.151 4.151 19 C 0.189 3.811 20 H 0.058 0.942 21 N -0.744 5.744 22 C -0.243 4.243 23 H 0.090 0.910 24 C 0.007 3.993 25 N -0.933 5.933 26 Si 0.881 3.119 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.276 1.276 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.149 0.851 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.060 0.940 44 H 0.361 0.639 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.336 18.457 11.023 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.129 4.129 4 H 0.089 0.911 5 C -0.003 4.003 6 N -0.323 5.323 7 C 0.351 3.649 8 O -0.406 6.406 9 C -0.195 4.195 10 C 0.143 3.857 11 F -0.096 7.096 12 C -0.183 4.183 13 C -0.066 4.066 14 C -0.184 4.184 15 C 0.140 3.860 16 F -0.099 7.099 17 C -0.016 4.016 18 C -0.192 4.192 19 C 0.079 3.921 20 H 0.076 0.924 21 N -0.386 5.386 22 C -0.372 4.372 23 H 0.108 0.892 24 C -0.189 4.189 25 N -0.581 5.581 26 Si 0.711 3.289 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.168 0.832 38 H 0.167 0.833 39 H 0.167 0.833 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.079 0.921 44 H 0.194 0.806 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.748 18.194 11.141 23.059 hybrid contribution -0.691 -0.278 -1.241 1.448 sum -9.439 17.917 9.900 22.541 Atomic orbital electron populations 1.21858 0.96601 1.01218 1.01470 1.21463 0.94578 0.95516 1.03522 1.21843 0.97700 0.96399 0.96945 0.91134 1.21818 0.99588 0.80850 0.97994 1.48131 1.08743 1.06500 1.68945 1.17761 0.86382 0.83438 0.77321 1.90799 1.14010 1.86006 1.49757 1.19948 1.08004 0.98314 0.93279 1.17343 0.95967 0.92309 0.80105 1.91608 1.86370 1.87399 1.44250 1.21212 1.01954 0.94480 1.00666 1.20994 0.95466 0.99713 0.90407 1.21176 1.03054 0.93196 1.00988 1.17306 0.97567 0.90410 0.80743 1.91578 1.93504 1.77433 1.47416 1.21894 0.78945 1.01173 0.99638 1.22651 1.02751 0.98793 0.94983 1.20154 0.90619 0.90574 0.90760 0.92396 1.42769 1.16502 1.66249 1.13076 1.19046 0.90382 1.27372 1.00435 0.89188 1.24642 0.96384 1.00214 0.97648 1.69693 1.19299 1.41554 1.27553 0.86608 0.81190 0.77335 0.83726 1.21165 1.21778 1.20250 0.92982 0.93055 0.92942 0.91861 0.90325 0.88853 0.90969 0.83241 0.83338 0.83298 0.90794 0.90893 0.89844 0.92131 0.80574 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.67 37.16 0.36 -1.67 16 2 C -0.11 -1.73 5.31 -26.73 -0.14 -1.87 16 3 C -0.11 -1.72 1.92 -90.50 -0.17 -1.89 16 4 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 5 C 0.12 1.73 5.32 -3.71 -0.02 1.71 16 6 N -0.59 -8.69 2.97 -173.99 -0.52 -9.21 16 7 C 0.57 8.87 6.43 -12.46 -0.08 8.79 16 8 O -0.53 -9.86 16.52 5.30 0.09 -9.78 16 9 C -0.19 -2.44 3.65 -104.85 -0.38 -2.82 16 10 C 0.16 1.88 7.13 -38.97 -0.28 1.60 16 11 F -0.12 -1.61 16.83 2.25 0.04 -1.57 16 12 C -0.16 -1.27 10.01 -39.56 -0.40 -1.67 16 13 C -0.05 -0.28 10.03 -39.53 -0.40 -0.67 16 14 C -0.17 -1.19 10.01 -39.56 -0.40 -1.58 16 15 C 0.16 1.72 7.29 -38.96 -0.28 1.44 16 16 F -0.12 -1.46 16.83 2.25 0.04 -1.42 16 17 C 0.11 1.44 6.33 -3.71 -0.02 1.42 16 18 C -0.15 -2.46 5.66 -26.61 -0.15 -2.61 16 19 C 0.19 3.41 2.19 -67.89 -0.15 3.26 16 20 H 0.06 1.09 8.08 -51.93 -0.42 0.67 16 21 N -0.74 -16.68 4.14 -53.38 -0.22 -16.90 16 22 C -0.24 -6.52 10.41 -15.06 -0.16 -6.68 16 23 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 24 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 25 N -0.93 -28.68 13.97 55.49 0.78 -27.90 16 26 Si 0.88 21.78 27.73 -169.99 -4.71 17.06 16 27 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.40 7.22 -51.93 -0.37 1.03 16 35 H 0.09 1.40 5.72 -51.93 -0.30 1.11 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.15 0.36 8.06 -52.49 -0.42 -0.07 16 39 H 0.15 0.69 8.06 -52.48 -0.42 0.26 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.07 0.89 6.23 -51.93 -0.32 0.56 16 42 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.36 8.17 5.37 -40.82 -0.22 7.95 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 371.59 15.07 5.60 5.60 Total: -1.00 -32.94 371.59 -7.90 -40.84 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -6.22 Total: 6.42 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: -2.77 Total: -3.14 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: 0.04 Total: -54.01 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.78 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.08 Total: -3.00 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.71 Total: 17.06 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.94 -7.90 -40.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037962157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.088 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds