Wall clock time and date at job start Tue Mar 31 2020 21:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46942 * 2 1 4 4 H 1.08998 * 109.49822 * 55.07320 * 3 2 1 5 5 C 1.53188 * 109.50231 * 294.99942 * 3 2 1 6 6 N 1.46922 * 108.89665 * 185.30948 * 5 3 2 7 7 C 1.34779 * 120.63430 * 233.68413 * 6 5 3 8 8 O 1.21557 * 119.99428 * 356.17840 * 7 6 5 9 9 C 1.47859 * 120.00052 * 176.18094 * 7 6 5 10 10 C 1.39543 * 120.11920 * 50.38063 * 9 7 6 11 11 C 1.38203 * 119.87616 * 179.78829 * 10 9 7 12 12 F 1.35095 * 119.94515 * 180.23044 * 11 10 9 13 13 C 1.38539 * 120.11713 * 0.46387 * 11 10 9 14 14 C 1.38527 * 120.24602 * 359.79197 * 13 11 10 15 15 F 1.35097 * 119.94138 * 180.02562 * 14 13 11 16 16 C 1.38204 * 120.12138 * 359.97284 * 14 13 11 17 17 C 1.47209 * 118.55295 * 53.54376 * 6 5 3 18 18 C 1.53196 * 108.85375 * 306.47335 * 17 6 5 19 19 C 1.53043 * 109.52191 * 175.14642 * 3 2 1 20 20 H 1.09000 * 109.45877 * 301.35617 * 19 3 2 21 21 N 1.46501 * 109.46042 * 61.32869 * 19 3 2 22 22 C 1.36933 * 119.99827 * 204.99995 * 21 19 3 23 23 H 1.08001 * 120.00093 * 359.97438 * 22 21 19 24 24 C 1.38814 * 119.99994 * 180.02562 * 22 21 19 25 25 N 1.31627 * 119.99774 * 359.97438 * 24 22 21 26 26 Si 1.86799 * 120.00335 * 180.02562 * 24 22 21 27 27 H 1.48507 * 109.46929 * 359.97438 * 26 24 22 28 28 H 1.48490 * 109.47724 * 119.99663 * 26 24 22 29 29 H 1.48507 * 109.46870 * 239.99765 * 26 24 22 30 30 H 1.09007 * 109.47022 * 299.99984 * 1 2 3 31 31 H 1.09004 * 109.47526 * 59.99811 * 1 2 3 32 32 H 1.09001 * 109.47299 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46971 * 240.00531 * 2 1 3 34 34 H 1.08996 * 109.47488 * 120.00566 * 2 1 3 35 35 H 1.08997 * 109.58696 * 305.17166 * 5 3 2 36 36 H 1.09000 * 109.58421 * 65.45072 * 5 3 2 37 37 H 1.08001 * 120.06190 * 0.02562 * 10 9 7 38 38 H 1.08001 * 119.87220 * 179.76338 * 13 11 10 39 39 H 1.07996 * 120.06142 * 180.02562 * 16 14 13 40 40 H 1.08997 * 109.53190 * 186.67697 * 17 6 5 41 41 H 1.08996 * 109.68062 * 66.36584 * 17 6 5 42 42 H 1.08999 * 109.49699 * 294.70745 * 18 17 6 43 43 H 1.08997 * 109.52339 * 174.62190 * 18 17 6 44 44 H 0.96996 * 120.00003 * 24.99841 * 21 19 3 45 45 H 0.96997 * 119.99506 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6066 1.9816 0.8424 5 6 1.6350 2.1281 -1.3087 6 7 2.2381 3.4671 -1.3508 7 6 1.4753 4.5575 -1.5645 8 8 0.2880 4.4331 -1.7937 9 6 2.0826 5.9049 -1.5203 10 6 3.2369 6.1772 -2.2555 11 6 3.7979 7.4396 -2.2140 12 9 4.9127 7.7060 -2.9289 13 6 3.2217 8.4310 -1.4366 14 6 2.0788 8.1647 -0.7005 15 9 1.5217 9.1362 0.0551 16 6 1.5067 6.9072 -0.7385 17 6 3.6914 3.5909 -1.1514 18 6 4.0733 2.8890 0.1556 19 6 3.5655 1.4456 0.1220 20 1 3.8573 0.9365 1.0406 21 7 4.1485 0.7500 -1.0279 22 6 5.3869 0.1748 -0.9243 23 1 5.9339 0.2343 0.0051 24 6 5.9396 -0.4839 -2.0140 25 7 5.2731 -0.5560 -3.1468 26 14 7.6286 -1.2692 -1.8725 27 1 8.1636 -1.0495 -0.5047 28 1 7.5202 -2.7270 -2.1338 29 1 8.5449 -0.6549 -2.8667 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.9912 1.5401 -2.1546 36 1 0.5495 2.2146 -1.3552 37 1 3.6889 5.4039 -2.8590 38 1 3.6655 9.4151 -1.4040 39 1 0.6154 6.7007 -0.1646 40 1 3.9627 4.6449 -1.0929 41 1 4.2172 3.1239 -1.9842 42 1 3.6206 3.4145 0.9965 43 1 5.1576 2.8907 0.2666 44 1 3.6574 0.6968 -1.8626 45 1 5.6592 -1.0166 -3.9081 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037974366.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:25 Heat of formation + Delta-G solvation = -87.679073 kcal Electronic energy + Delta-G solvation = -30124.842897 eV Core-core repulsion = 25778.469457 eV Total energy + Delta-G solvation = -4346.373440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.155 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.32223 -49.26395 -40.63352 -38.75748 -37.62181 -34.60126 -33.81200 -31.83418 -31.55250 -30.74841 -29.47907 -28.50607 -25.82506 -24.00855 -23.85552 -23.36126 -23.04310 -20.89315 -20.28969 -18.74783 -17.92650 -17.54515 -17.38261 -16.83478 -16.55590 -16.23488 -15.93050 -15.83568 -15.58934 -14.98123 -14.66753 -14.60096 -14.46464 -14.03909 -13.82165 -13.36152 -13.30931 -13.21599 -12.82995 -12.63809 -12.45019 -12.30320 -12.21901 -12.13668 -11.72469 -11.47437 -11.13252 -11.02505 -10.85802 -10.79115 -10.39386 -10.33025 -10.18480 -9.91136 -9.85058 -9.60999 -9.36768 -9.09721 -8.94867 -8.38311 -7.03071 -5.84125 -3.12753 0.37438 0.60873 2.48539 2.87401 3.15569 3.38109 3.44656 3.46566 3.54013 4.06354 4.15910 4.43602 4.53210 4.54197 4.66750 5.00645 5.11938 5.22341 5.27832 5.40258 5.43108 5.47266 5.53710 5.56242 5.60170 5.63888 5.71313 5.74692 5.77471 5.85421 6.01275 6.08747 6.10561 6.26795 6.31279 6.33950 6.36184 6.49703 6.54038 6.63945 6.69711 6.86770 6.92621 7.49358 7.64877 8.11307 8.34246 9.46306 10.02012 10.37087 11.38182 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011378 B = 0.003704 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.365250 B = 7558.455505 C = 9263.449893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.067 0.933 5 C 0.118 3.882 6 N -0.588 5.588 7 C 0.557 3.443 8 O -0.537 6.537 9 C -0.057 4.057 10 C -0.134 4.134 11 C 0.130 3.870 12 F -0.125 7.125 13 C -0.177 4.177 14 C 0.127 3.873 15 F -0.128 7.128 16 C -0.118 4.118 17 C 0.102 3.898 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.052 0.948 21 N -0.718 5.718 22 C -0.238 4.238 23 H 0.070 0.930 24 C -0.010 4.010 25 N -0.931 5.931 26 Si 0.903 3.097 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.293 1.293 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.155 0.845 38 H 0.152 0.848 39 H 0.150 0.850 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.049 0.951 43 H 0.076 0.924 44 H 0.384 0.616 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.515 14.532 5.440 16.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.085 0.915 5 C -0.004 4.004 6 N -0.319 5.319 7 C 0.343 3.657 8 O -0.416 6.416 9 C -0.060 4.060 10 C -0.153 4.153 11 C 0.110 3.890 12 F -0.104 7.104 13 C -0.197 4.197 14 C 0.108 3.892 15 F -0.107 7.107 16 C -0.138 4.138 17 C -0.020 4.020 18 C -0.191 4.191 19 C 0.067 3.933 20 H 0.070 0.930 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.206 4.206 25 N -0.580 5.580 26 Si 0.734 3.266 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.172 0.828 38 H 0.170 0.830 39 H 0.168 0.832 40 H 0.094 0.906 41 H 0.108 0.892 42 H 0.068 0.932 43 H 0.095 0.905 44 H 0.219 0.781 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.940 14.400 5.363 16.861 hybrid contribution 1.154 -0.177 -0.261 1.196 sum -5.786 14.223 5.102 16.180 Atomic orbital electron populations 1.21860 0.96776 1.01122 1.01350 1.21415 0.94295 0.95596 1.03480 1.21756 0.97463 0.96243 0.96838 0.91484 1.21778 0.98908 0.81002 0.98715 1.48146 1.08907 1.06371 1.68468 1.18017 0.86131 0.83692 0.77844 1.90798 1.14991 1.86284 1.49500 1.19562 0.94509 0.94700 0.97274 1.21495 0.95789 0.96470 1.01546 1.17070 0.85084 0.93176 0.93643 1.91572 1.48900 1.94301 1.75599 1.21159 0.97348 1.01341 0.99865 1.17041 0.93123 0.85782 0.93268 1.91551 1.84342 1.61285 1.73472 1.21142 1.01343 0.90690 1.00596 1.22142 0.78649 1.00703 1.00525 1.22532 1.01991 0.99267 0.95296 1.20234 0.89680 0.90630 0.92727 0.92987 1.42478 1.19020 1.64080 1.10510 1.19254 0.93482 1.27090 0.97106 0.91190 1.24695 0.98512 1.01412 0.96009 1.69655 1.37988 1.48069 1.02244 0.86184 0.84276 0.78943 0.77148 1.20638 1.21965 1.21974 0.93362 0.92772 0.93105 0.90417 0.91934 0.90285 0.89366 0.82773 0.83029 0.83234 0.90577 0.89164 0.93220 0.90543 0.78112 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.67 37.16 0.36 -1.62 16 2 C -0.11 -1.66 5.19 -26.73 -0.14 -1.80 16 3 C -0.10 -1.57 2.14 -90.50 -0.19 -1.76 16 4 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 5 C 0.12 1.85 5.01 -3.71 -0.02 1.84 16 6 N -0.59 -8.86 2.98 -173.65 -0.52 -9.38 16 7 C 0.56 8.40 7.24 -12.32 -0.09 8.31 16 8 O -0.54 -9.58 16.47 5.32 0.09 -9.49 16 9 C -0.06 -0.71 5.02 -104.98 -0.53 -1.23 16 10 C -0.13 -1.52 7.34 -39.11 -0.29 -1.80 16 11 C 0.13 1.36 7.29 -39.48 -0.29 1.07 16 12 F -0.13 -1.39 17.26 2.25 0.04 -1.35 16 13 C -0.18 -1.65 10.00 -39.36 -0.39 -2.04 16 14 C 0.13 1.28 7.29 -39.49 -0.29 0.99 16 15 F -0.13 -1.30 17.26 2.25 0.04 -1.26 16 16 C -0.12 -1.30 9.71 -39.11 -0.38 -1.68 16 17 C 0.10 1.50 5.12 -3.55 -0.02 1.48 16 18 C -0.15 -2.31 5.78 -26.61 -0.15 -2.47 16 19 C 0.18 3.10 2.53 -67.88 -0.17 2.93 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -15.65 3.72 -53.38 -0.20 -15.85 16 22 C -0.24 -5.98 9.93 -15.06 -0.15 -6.13 16 23 H 0.07 1.73 7.83 -52.49 -0.41 1.32 16 24 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 25 N -0.93 -26.27 13.06 55.49 0.72 -25.54 16 26 Si 0.90 21.29 29.55 -169.99 -5.02 16.26 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 29 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.70 6.69 -51.93 -0.35 0.35 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.37 7.70 -51.93 -0.40 0.97 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.39 6.64 -51.93 -0.34 1.05 16 36 H 0.09 1.39 5.73 -51.93 -0.30 1.09 16 37 H 0.15 1.74 7.05 -52.49 -0.37 1.37 16 38 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 39 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.08 0.96 4.57 -51.93 -0.24 0.73 16 41 H 0.09 1.56 7.74 -51.93 -0.40 1.16 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.38 8.99 5.94 -40.82 -0.24 8.74 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 367.64 15.07 5.54 5.54 Total: -1.00 -28.18 367.64 -8.13 -36.31 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -5.99 Total: 9.03 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: -2.83 Total: -4.27 kcal Atomic # 7 Polarization: -50.77 SS G_CDS: 0.01 Total: -50.76 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.08 Total: -2.62 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.18 -8.13 -36.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037974366.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.367 kcal (2) G-P(sol) polarization free energy of solvation -28.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds